BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55690.1
Length=2607
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474628 jgi|Araly1|474628|fgenesh2_kg.1__4582__AT1G55690.1 3729 0.0
Ahg917308 jgi|Araly1|917308|Al_scaffold_0008_2059 387 3e-106
> Ahg474628 jgi|Araly1|474628|fgenesh2_kg.1__4582__AT1G55690.1
Length=2529
Score = 3729 bits (2019), Expect = 0.0
Identities = 2415/2593 (93%), Gaps = 79/2593 (3%)
Strand=Plus/Plus
Query 24 ACACGCGAGAAATTTCAGATCTTTCCTCTCTCCGCATCTCCC-TTTTTGCATCCTCGTGT 82
|||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1 ACACGCGAGAAACTTCAGATCTTTCCTCTCTCCGCATCTCCCTTTTTTGCATCTTCGTGT 60
Query 83 AATCATCGTCTaagaagaagaagaagaaTCCTTTTGCTTGTTGCTTTACTTTCTCTGCAA 142
||||||||| ||||||||||||||||| || || ||||| |||||||||||||| ||
Sbjct 61 AATCATCGTAGAAGAAGAAGAAGAAGAAGCC--TT--TTGTTACTTTACTTTCTCTGGAA 116
Query 143 ACTTTCGTATCTTTGCGTG-TTTGAGAATCTCTCTATCTTTCTCGGATTTGGAGAGTTAT 201
| ||||||||||||||||| ||||||||||| |||| | |||||||||||||||||||||
Sbjct 117 A-TTTCGTATCTTTGCGTGTTTTGAGAATCTTTCTACCCTTCTCGGATTTGGAGAGTTAT 175
Query 202 CGA----AGAGATCGTGTCACATTAAGGATTGAAGACAAGTCTTTAATGCAGAGAAATCG 257
||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 176 CGATCGGAGAGATCGTGTCACATTAAGGGTTGAAGATAAGTCTTTAATGCAGAGAAATCG 235
Query 258 TGTGAAAATGGATTCTTAAGCCCCACTTTTAGTTGCAGATCTGGAGCTTTTTACTGGGTT 317
|||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 236 TGTGAAAATGGATTCTTAAGCCCCAC-TTTAGTTGCAGATCTGGAG-------C------ 281
Query 318 TCTGCTAATTTATCGACAAGAACaaaaaaaGGTTTGTTTTGTCTCACAAGTGATGGTCGT 377
| | | |||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 282 T-T--T--TTTATCGAGAAGAACAAAAAGAGGTTTGTTTTGTCTCATAAGTGATGGTCGT 336
Query 378 ATGACTCACATGCATGTCCTCTGAGCTCGTTTAGCATCAATAAGCTTTCCCTTTGAATTG 437
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 337 ATGACTCACATGCATGTCCTCTGAGCTCGTTTAGCATCAAGAAGCTTTCCCTTTGAATTG 396
Query 438 ATATGTCAGGTGTTGAAGAAATCAGTACACTTGACGAATTTAGGGAAAGAAGATCAGACT 497
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 397 ATATGTCAGGTGTTGAAGAAATCAGTACATTTGACGAATTTAGGGGAAGAAGATCAGACT 456
Query 498 TTGAAATCTCAGAAGATGAGAGACGGCGCTCAAAAATAGGGAATTTGAAGAAGAAAGCCA 557
||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 457 TTGAAATCTCAGAAGATGAGAGACGCCGCTCAAAAATAGGGAATTTTAAGAAGAAGGCCA 516
Query 558 TTAATGCTTCAACCAAGTTCACTCATTCTTTGAAGAAACGGGGGAAAAGGAAAATTGACT 617
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 517 TTAATGCTTCAACCAAGTTCACCCATTCTTTGAAGAAACGTGGGAAAAGGAAAATTGACT 576
Query 618 ATCGGGTTCCTGCAGTCTCCATTGAAGATGTAAGGGATGAAAAAGAGGAGAGCGTTGTGC 677
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 ATCGGATTCCTGCAGTCTCCATTGAAGATGTAAGGGATGAAAAAGAGGAGAGCGTTGTGC 636
Query 678 TTGAATTCCGCCGTAAGCTTCTTGAGAGAGATTTGTTACCTCCTAGACATGATGAGTACC 737
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 637 TTGAATTCCGCCGTAAGCTTCTTGAGAGAGACTTGTTACCTCCTAGACATGATGAGTACC 696
Query 738 ATACTCTTCTGAGGTTTTTGAAAGCTAGGGATCTTAACATTGAAAAAACCACCCAGTTGT 797
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 697 ATACTCTTCTGAGGTTTTTGAAAGCTAGGGATCTTAACATTGAAAAAACCATCCAGATGT 756
Query 798 GGGAAGAAATGCTTAGATGGAGAAAAGAGTATGGGACAGATACCATACTAGAGGATTTTG 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 GGGAAGAAATGCTTAGATGGAGAAAAGAGTATGGGACAGATACCATACTAGAGGATTTTG 816
Query 858 ATTTCGAAGAGCTTGAAGAAGTTTTGCAATACTATCCTCAAGGCTATCATGGAGTTGATA 917
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 817 ATTTCGAAGAGCTTGAAGAAGTTTTGCAATACTATCCTCAAGGCTATCATGGAGTTGACA 876
Query 918 AGGAAGGAAGACCTGTCTACATTGAAAGACTTGGAAAAGCTCATCCCTCTAAGCTTATGC 977
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 877 AGGAAGGAAGACCTGTATACATTGAAAGACTTGGAAAAGCTCATCCCGCTAAGCTTATGC 936
Query 978 GTATCACCACCATAGATAGATATTTAAAGTACCATGTGCAAGAGTTTGAGAGAGCTCTCC 1037
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 GTATCACCACCATCGATAGATATTTAAAGTACCATGTGCAAGAGTTTGAGAGAGCTCTCC 996
Query 1038 AGGAGAAATTCCCTGCATGCTCAATTGCTGCAAAGCGTCGAATCTGTTCCACAACTACAA 1097
|||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 997 TTGAGAAATTCCCTGCATGCTCAATTGCCGCAAAGCGCCGAATCTGTTCCACGACTACAA 1056
Query 1098 TACTGGATGTGCAAGGATTGGGAATTAAGAACTTTACACCAACAGCTGCAAATCTTGTGG 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 TACTGGATGTGCAAGGATTGGGAATTAAGAACTTTACACCAACAGCTGCAAATCTTGTGG 1116
Query 1158 CTGCCATGTCGAAGATAGACAACAGTTACTACCCTGAGACGTTGCACAGAATGTACATTG 1217
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1117 CTGCCATGTCGAAGATAGACAACAGCTACTACCCTGAGACGTTGCACAGAATGTACATTG 1176
Query 1218 TAAATGCTGGAACAGGTTTCAAAAAGATGCTTTGGCCTGCTGCTCAGAAGTTTCTTGATG 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 TAAATGCTGGAACAGGTTTCAAAAAGATGCTTTGGCCTGCTGCTCAGAAGTTTCTTGATG 1236
Query 1278 CAAAGACCATTGCAAAGATACACGTGCTAGAGCCCAAATCTCTATTTAAGTTACATGAAG 1337
|||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||
Sbjct 1237 CAAAGACCATTGCAAAGATACATGTGCTAGAACCCAAATCTTTATTTAAGTTACATGAAG 1296
Query 1338 TCATTGATTCAAGTCAATTGCCAGAATTCCTTGGAGGTTCATGCTCTTGCTTTGGTGATG 1397
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1297 TCATTGATTCAAGTCAATTGCCAGAATTCCTTGGAGGTTCATGCTTTTGCTTTGGTGATG 1356
Query 1398 GAGGAGGGTGTCTTCGCTCTAATAAAGGACCCTGGAATGATCCTGAAATAATGAAGCTCA 1457
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 GAGGAGGGTGTCTTCGCTCAAATAAAGGACCCTGGAATGATCCTGAAATAATGAAGCTCA 1416
Query 1458 TCTACCATGGAGAATCATCACTTTTTAGGCAAA-GCACCAGAAAGCTGACTGACCCGCAT 1516
|||||||||| |||||||||| |||| |||||| | ||||| ||||| | ||||| ||||
Sbjct 1417 TCTACCATGGCGAATCATCACATTTTCGGCAAATG-ACCAGGAAGCTAAGTGACCTGCAT 1475
Query 1517 TATTCTTCTTCCTACATAAGTATACATCCATCAAAGGCTATACAAGCTGAGACTTCAGCA 1576
||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1476 AATTCTTCATCCTACATTAGTATACATCCATCGAAGGCTATACAAGCTGAGACTTCAGCA 1535
Query 1577 GCAGAGTCGATATCTTGTTCTGATGTTCCTTCTTCTCCAACTGGAAGATTATGCTCAGCC 1636
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1536 GCAGAGTCGGTATCTTGTTCTGATGTTCCTACTTCTCCAACTGGAAGATTATGCTCAGCC 1595
Query 1637 TCTTCTCATGTGAATTCAGCTTATGAGGAAGCTAGGGCATCAGATGTTAATGGCTATTAT 1696
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1596 TCTGCTCATGTGAATTCAGCTTATGAGGAAGCTAGGGCATCAGATGTTAATGGCTATTAT 1655
Query 1697 AGTTGCGACGACAAGTTTGCCATACCTGACAAAGCTACTAACCGAAAAGGCCAAGAAAGG 1756
|||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1656 AGTTGCGATGACAAGTTTGCCATACCTGACAAAGCTACTAACAGAAAAAACCAAGAAAGG 1715
Query 1757 CAATCCCAATACCAAATGCGTGAACTTAATGCAA-CAACTATCGGTTTAAAATGTGAAAC 1815
||||||| |||||||||| ||||| ||| ||| | ||| |||||||||||||||||||
Sbjct 1716 CAATCCCTTTACCAAATGCCCGAACTCAAT-CAAACTACTCTCGGTTTAAAATGTGAAAC 1774
Query 1816 ATCTTCACCAGGTGCTCCCATCATCCGTTGGCTTCATGATTTAAGGGTAATGATTGACAA 1875
|||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1775 ATCTCCACCAGGTGCTCCCATCATCCGTTGGCTTCATGATTTAAGGGGAACCATTGACAA 1834
Query 1876 GATAAAATGTGAGAACCTAGCGAAAAGACTACTTTCGTTAATGCTGAAACTAGCTGCAGT 1935
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1835 GATAAAATGTGAGAACCTAGCGAAAAGGCTACTTTCTTTAATGCTGAAACTAGCTGCAGT 1894
Query 1936 TTTTCGTTATACTCCGCTTGAGCTTCTGAGAAGCCAGACTACAGTCAGCCCTTCAAGTCT 1995
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1895 TTTCCGTTATACTCCGCTTGAGCTTCTGAGAAGCCAGACTACAGTCAGCCCTTCAAGTCC 1954
Query 1996 AACAGAAGATGACAGTCGGTGCAGCCTCATCTCACCACCTCCTAGAGAGCCCACAATGAA 2055
|||||||||||||||| |||| ||| |||||||| | |||||||||||||||||||||
Sbjct 1955 AACAGAAGATGACAGTAGGTGTAGCTTCATCTCAGC---TCCTAGAGAGCCCACAATGAA 2011
Query 2056 AGACCGGATTCTTCCATGTTTGGAACGTATTCAGAAACTGGAGAAAAGTTATGAGGATAT 2115
|||||||||||||||||||||||| ||||||||| ||||||||||| |||||||| ||||
Sbjct 2012 AGACCGGATTCTTCCATGTTTGGAGCGTATTCAGGAACTGGAGAAATGTTATGAGAATAT 2071
Query 2116 TCGGAACAAACCCGT-TGCAATACCTGTAGAGAAGGAGAGAATGTTGATGGATTCTTTAG 2174
||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 2072 TCGGAACAAACCCGTCTCCA-TACCTGTAGAGAAGGAGAGAATGTTGATGGATTCTTTAG 2130
Query 2175 ATAGAATCAAGTCAGTTGAGTTTGATCTCGACAAAACAAAGAGGCTTTTACACGCCACGG 2234
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2131 ACAGAATCAAGTCAGTTGAGTTTGATCTCGACAAAACAAAGAGGCTTTTACACGCCACGG 2190
Query 2235 TGATGAAACAGATGGAGATAACTGAAATGCTGCAAAATATACGAGACTCCCAACTTCACA 2294
|||||||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||| |
Sbjct 2191 TGATGAAACAAATGGAAATAACTGAAATGCTGCAAAATTTACGAGATTCCCAACTTCATA 2250
Query 2295 GAAGAAGAAGATTGTTCTGTTAATAAACCATAAGAGAACATCTGAGTTTTGCATAAATAC 2354
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2251 GAAGAAGAAGATTGTTCTGTTAA-AAACCATAAGAGAACATCTGAGTTTTGCATAAATAC 2309
Query 2355 AAATCTGCACATACagagaaagagagagagagaATTGAAAACAAAAGACA--T-G-TCCC 2410
||||||||||||||||||| ||||||||| || |||| ||||| ||| | | ||||
Sbjct 2310 AAATCTGCACATACAGAGAGAGAGAGAGA-AGCG--GAAA-CAAAACACACATAGGTCCC 2365
Query 2411 TATGCTTCCACTTTTTAAGTTATAAAAAGAAGAAGAAGAAGATAGTGACAGAGAAAGACT 2470
| |||||||||||||||||||||||||||||||||||||||| || | | | ||| |
Sbjct 2366 TCTGCTTCCACTTTTTAAGTTATAAAAAGAAGAAGAAGAAGA-AG--A-A-A-AAA---T 2416
Query 2471 CTGATGATCAATCCTGTCTGTGATAATT-TAGATTGAGAGAGATCAGAATTTTAAAAACC 2529
||||||||||||||||||| ||| |||| |||||||||||| | | | ||
Sbjct 2417 CTGATGATCAATCCTGTCTTTGACAATTATAGATTGAGAGA-A--A---T--------CC 2462
Query 2530 AAATCCTTTTGTTGTAATCAGTGTAGATAAGAAA-CTACACTAAGCTAAACAAATGAGAT 2588
| ||| ||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 2463 ---T--TTT-GTTCTAATCGGTGTAGATAAGAAAACTACACTAAGCTAAACAAATGAGAT 2516
Query 2589 TTTGTAAATCTTT 2601
|||||||||||||
Sbjct 2517 TTTGTAAATCTTT 2529
> Ahg917308 jgi|Araly1|917308|Al_scaffold_0008_2059
Length=1728
Score = 387 bits (209), Expect = 3e-106
Identities = 732/973 (75%), Gaps = 81/973 (8%)
Strand=Plus/Plus
Query 508 AGAAGATGAGAGACGGCGCTCAAAAATAGGGAATTTGAAGAAGAAAGCCATTA-ATGCTT 566
|||||| ||| |||||| || | ||| ||||||||||||||||| || |||| || ||
Sbjct 51 AGAAGAAGAGCCACGGCGTTCTAGAATCGGGAATTTGAAGAAGAAGGCTATTACTTG-TT 109
Query 567 CAA-CCAAGTTCACTCATTCTTTGAAGAAACGGGGGAAAAGG-AAAATTGACTATCG-GG 623
||| || || |||||| |||||||| | ||||||| ||| | | |||| |
Sbjct 110 CAAGTAAACTT-ACTCATCCTTTGAAG--A-----GAAAAGGCAAACGT-AAAATCGAGC 160
Query 624 TTCCTGCAGTCTCCATTGAAGATGTAAGGGATGAAAAAGAGGAG-AGCGTTG-TGCTTGA 681
||||| | | ||||||||||| |||||||| ||||| ||| || ||| | | | |
Sbjct 161 TTCCT----T-T-TATTGAAGATGTTAGGGATGAGAAAGATGAGAAG-ATTGTTTC-TAA 212
Query 682 ATTCCGCCGT-AAG--CTTCTTGAGAGAGATTTGTTACCTCCTA-GACATGATGAGTACC 737
||| | ||| ||| |||||| ||| ||||||||| ||||| | | |||||||| || |
Sbjct 213 ATT--G-CGTCAAGAACTTCTTAAGAAAGATTTGTTGCCTCCAACG-CATGATGATTATC 268
Query 738 ATACTCTT-CTGAGGTTTTTGAAAGCTA-GGGATCTTAACATTGAAAAAACCACCCAGTT 795
||| | || |||||||| ||||| | | || || | || || || |||| | || |
Sbjct 269 ATA-TGTTGTTGAGGTTTCTGAAAACAATGGAAT-TCAAAATCGAGAAAA-CTGTCA-CT 324
Query 796 G--TGGGAAGAAATGCTTAGATGGAGAAAAGAGTATGGGACAGATAC-CA-TACTAGAGG 851
| |||||||| ||||| | |||||| ||||| | || || || | || || || |||
Sbjct 325 GCATGGGAAGATATGCTCAAATGGAGGAAAGAATTTGCAACTGA-CCGCATTA-TACAGG 382
Query 852 ATTTTGATTTCGAAGAGCTT-GAAGAAGTTTTGCAATACTATCCTCAAGGCTATCATGGA 910
||||| ||||| ||||| || || |||| | ||||||||||||| |||||||||
Sbjct 383 ATTTTAATTTCAAAGAG-TTGGACCAAGTGACACGGCACTATCCTCAAGGGTATCATGGA 441
Query 911 GTTGATAAGGAAGGAAGACCTGTCTACATTGAAAGACTTGGAAAAGCTCATCCCT-CTAA 969
||||||||||| || |||||| | || || ||||||||||||||||||||| ||| |||
Sbjct 442 GTTGATAAGGATGGGAGACCTATTTATATCGAAAGACTTGGAAAAGCTCAT-CCTGGTAA 500
Query 970 GCTTAT-G-CGTATCACCACCATAGATAGATATTTAAAGTACCATGTGCAAGAGTTTGAG 1027
|||||| | || | || |||||||| ||||||| ||||||||||| ||||| ||||||
Sbjct 501 GCTTATGGAGGT-T-ACTACCATAGAGCGATATTTGAAGTACCATGTACAAGAATTTGAG 558
Query 1028 A-GAGCTCTCCAGGAGAAATTCCCTGCATGCTCAATTGCTGCAAAGCGTCGAATCT-GTT 1085
| || | || || ||||| ||||||| || ||| |||| || ||||| ||| | | |
Sbjct 559 AGGA-CACTTCAAGAGAAGCTCCCTGCGTGTTCAGTTGCAGCTAAGCGACGAGT-TACTA 616
Query 1086 CCACAACTACAATACTGGATG-TGCAAGGATTGGGAATTAAGAACTTTACACCAACAGCT 1144
| |||||||| || || |||| || |||| ||||| || ||||||||||| || ||||||
Sbjct 617 CAACAACTACGATTCTAGATGTTG-AAGGCTTGGGTATGAAGAACTTTACTCCTACAGCT 675
Query 1145 GCAAATCTTGTGGCTGCCA-TGTC-GAAGATAGACAACAGTTACTACCCTGAGACGTTGC 1202
|| ||||| |||| ||| || | ||| |||| || ||| ||||||||||| ||||
Sbjct 676 GCTAATCTCCTGGCCACCATTG-CTAAAG-TAGATTGCAATTATTACCCTGAGACTTTGC 733
Query 1203 ACAGAATGTACATTGTAAATGCTGGAACAGGTTTCAAAAAGATGCTTTGGCCTGCTGCTC 1262
|| |||||| |||||| ||||| || | || |||| || | ||||||||||| || |
Sbjct 734 ACCGAATGTTCATTGTCAATGCAGGGATTGGATTCAGGAATTTTCTTTGGCCTGCCGCAC 793
Query 1263 AGAAGTTTCTTGATGCAAAGACCATTGCAAAGATACACGTGCTAGAGCCCAA-AT-CTCT 1320
||||| || ||||| | | ||| |||||||||||||| || | ||| |||| | || |
Sbjct 794 AGAAGCTTGTTGATCCGATGACTATTGCAAAGATACAAGTTTTGGAG-CCAAGGTCCT-T 851
Query 1321 ATTTAAGTTACATGAAGTC-ATTGATTCAAGTCAA-TTGCCAGAATTCCTT-GGAGG-TT 1376
| ||||||| ||||| | |||||||| |||||| || ||||| || ||| ||||| ||
Sbjct 852 GTCAAAGTTACTTGAAG-CAATTGATTCCAGTCAACTT-CCAGAGTT-CTTGGGAGGCTT 908
Query 1377 CATGCTCTTGCTTTGGTGATGGA-GGAGGGTGTCTT-CGCTCTAATAAAGGACCCTGGAA 1434
|||| || | | | || |||||||| ||| | || |||||||||||||||||
Sbjct 909 -ATGCAAATG---TCCT-AACGAGGGAGGGTG-CTTGAGGTCAAATAAAGGACCCTGGAA 962
Query 1435 TGATCCTGAAATA 1447
|||||||||||||
Sbjct 963 TGATCCTGAAATA 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98310922345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5