BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55720.1
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474631 jgi|Araly1|474631|fgenesh2_kg.1__4585__AT1G55720.1 1696 0.0
Ahg914699 jgi|Araly1|914699|Al_scaffold_0001_4953 1687 0.0
Ahg929070 jgi|Araly1|929070|scaffold_301527.1 1112 0.0
> Ahg474631 jgi|Araly1|474631|fgenesh2_kg.1__4585__AT1G55720.1
Length=1167
Score = 1696 bits (918), Expect = 0.0
Identities = 1093/1175 (93%), Gaps = 21/1175 (2%)
Strand=Plus/Plus
Query 217 ATGGAGCAAGGATCACTTCGAGAACGCAGAGCTAAAGCGCCTAGGAACAGTGTGGTCCAG 276
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGGAGCAAGGATCACTTCGAGAACGCAGAGCTAAAGCGCCTAGGAACAGTGTGATCCAG 60
Query 277 AGCTTCAAGATCGTCATTTTATCGAATAAACTAAATCTTTTGTTGCCTTTCGGTCCTCTA 336
|||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 61 AGCTTCAAGATCGTGATTTTATCAAATAAACTCAATCTTTTGTTGCCTTTCGGTCCTCTA 120
Query 337 GCAATACTAGTCCACTACTTGACAGATAATAAGGGGTGGTTCTTCTTACTAAGCTTAGTA 396
|| ||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 121 GCTATACTAGTCCATTACTTGACAGATACTAAGGGATGGTTCTTCTTACTAAGCTTAGTA 180
Query 397 GGTATCACACCATTAGCTGAACGTCTCGGATATGCCACAGAGCAATTGTCTTGCTACACA 456
|| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 181 GGCATCACACCATTAGCTGAACGTCTCGGATATGCCACAGAGCAATTGGCTTGTTACACA 240
Query 457 GGCGCAACTGTTGGAGGTCTCCTCAATGCTACATTTGGAAACGTGATTGAGCTGATCATA 516
|| ||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||
Sbjct 241 GGTTCAACTGTTGGAGGCCTCCTAAACGCTACATTTGGAAACGTGATAGAGCTGATCATA 300
Query 517 TCGATTATCGCTCTTAAAAATGGAATGATACGCGTTGTACAGTTGACGCTGCTTGGCTCG 576
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 301 TCGATTATCGCTCTTAAAAACGGGATGATACGCGTTGTACAGTTGACGCTGCTTGGCTCG 360
Query 577 ATTCTTTCTAACATTTTGCTTGTACTTGGCTGCGCTTTTTTCTGTGGCGGCCTTGTG-TT 635
||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 361 ATTCTGTCTAACATGTTGCTTGTACTTGGGTGCGCCTTTTTCTGTGGCGGCCTTGTGTTT 420
Query 636 TCCCGGGAAAGATCAAGTCTTTGACAAAAGG-AATGCAGTTGTGAGTTCGGGCATGCTTT 694
|||| |||||||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 421 TCCC-GGAAAGATCAAGTCTTTGAC-AAAGGAAATGCAGTTGTGAGTTCGGGGATGCTTT 478
Query 695 TAATGGCAGTCATGGGACTACTCTTCCCCACATTTCTTCATTACACGCACAGCGAGGTTC 754
|| ||||||||||||| || || |||||||| |||||||||||||||||||||||||||
Sbjct 479 TATTGGCAGTCATGGGGCTGCTTTTCCCCACGGTTCTTCATTACACGCACAGCGAGGTTC 538
Query 755 ATGCTGGATCATCAGAGCTTGCTCTGTCGAGATTTATCAGTTGTATAATGCTCGTTGCCT 814
|||| || ||||||||||||||||| || |||||||||||||||||||||||| ||||||
Sbjct 539 ATGCCGGGTCATCAGAGCTTGCTCTCTCAAGATTTATCAGTTGTATAATGCTCCTTGCCT 598
Query 815 ATGCAGCTTATCTCTTTTTCCAGTTAAAGAGCCAGCCAAGTTTTTATACCGAGAAAACTA 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 599 ATGCAGCTTATCTCTTTTTCCAGTTAAAGAGCCAGCCAAGTTTTTATACCGAGAA--C-A 655
Query 875 ACCAGAACGAAGAAACTTCA-AACGATGATGAAGATCCTGAGATCTCCAAGTGGGAAGCT 933
| |||| | | | || || |||||||||||||| |||||||||||||||||||||
Sbjct 656 A--AGAA--ATG----T-CAGAA-GATGATGAAGATCCCGAGATCTCCAAGTGGGAAGCT 705
Query 934 ATCATCTGGCTTTCAATCTTTACGGCTTGGGTCTCTCTTCTTTCGGGCTATCTTGTCGAT 993
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 706 ATCATCTGGCTTTCAATTTTTACGGCTTGGGTCTCTCTTCTTTCCGGCTATCTTGTTGAT 765
Query 994 GCCATAGAGGGTACTTCGGTCTCATGGAAGATACCAATCTCTTTTATCAGTGTCATCTTG 1053
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 GCCATAGAGGGTGCTTCAGTCTCATGGAAGATACCAATCTCTTTTATCAGTGTCATCTTG 825
Query 1054 CTTCCTATAGTTGGGAATGCGGCTGAGCATGCAGGTGCGATTATGTTTGCCATGAAAGAC 1113
||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 826 CTTCCAATAGTTGGGAATGCGGCCGAGCATGCAGGTGCTATTATGTTTGCCATGAAAGAC 885
Query 1114 AAGCTGGATCTGTCTTTGGGAGTGGCTATTGGATCCTCCATTCAGATTTCTATGTTCGCG 1173
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 886 AAGCTGGATCTGTCTTTGGGAGTGGCTATTGGATCCTCAATTCAGATTTCTATGTTCGCG 945
Query 1174 GTTCCTTTTTGTGTGGTGATCGGATGGATGATGGGTGCACAAATGGATCTAAATCTCCAG 1233
|||||||| |||||||||||||||||||||||||||| ||||||||| |||||| |||||
Sbjct 946 GTTCCTTTCTGTGTGGTGATCGGATGGATGATGGGTGTACAAATGGACCTAAATTTCCAG 1005
Query 1234 CTATTTGAGACGGCTACTCTGCTCATAACTGTTATTGTTGTAGCTTTCTTTCTCCAGTTA 1293
||||||||||| |||||| || | |||||||||||||||||||||||||||||||||
Sbjct 1006 CTATTTGAGACAGCTACTATGTTTATAACTGTTATTGTTGTAGCTTTCTTTCTCCAG--- 1062
Query 1294 GAAGGGACATCGAATTACTTCAAAAGATTGATGCTCATTCTTTGCTATTTGATAGTCGCT 1353
||||||||||| |||||||||||| || ||||||| ||||||||||||||| ||||||||
Sbjct 1063 GAAGGGACATCAAATTACTTCAAAGGACTGATGCTGATTCTTTGCTATTTGGTAGTCGCT 1122
Query 1354 GCTAGTTTCTTTGTACACGAAGATCCTCATCAAGG 1388
|| || |||||||||||||||||||||||||||||
Sbjct 1123 GCCAGCTTCTTTGTACACGAAGATCCTCATCAAGG 1157
> Ahg914699 jgi|Araly1|914699|Al_scaffold_0001_4953
Length=1326
Score = 1687 bits (913), Expect = 0.0
Identities = 1189/1317 (90%), Gaps = 40/1317 (3%)
Strand=Plus/Plus
Query 100 TGTAAGGTGCCAGCTTTTATGCAGGCGAAGGTAGAAATGGGGCTT-GTTAATGAAGTTGA 158
||||||||||||||| |||| |||||| |||||||||||||| || |||||||| |||||
Sbjct 10 TGTAAGGTGCCAGCTCTTATTCAGGCGCAGGTAGAAATGGGG-TTGGTTAATGATGTTGA 68
Query 159 GCTTAAAAGCC-TTTTGGAACAAGAAACAGATTCCCCACAAACAAATGCAGCTTCTTTGA 217
|| ||||||| |||| | || ||| |||||||||||||||| ||| |||||||| ||||
Sbjct 69 GCACAAAAGCCTTTTTAG-ACGAGATACAGATTCCCCACAAAGAAAAGCAGCTTCCTTGA 127
Query 218 TGGAGCAAGGATCA-------C-----TTCGAGAACGCAG-AGCTAAAGCGCCTAGGAAC 264
|||| ||||||||| | ||||||||||| | | ||||| | |||| ||||
Sbjct 128 TGGAACAAGGATCACTTTCTGCAAGTTTTCGAGAACGC-GCAACTAAAACACCTATGAAC 186
Query 265 AGTGTGGTCCAGAGCTTCAAGATCGTCATTTTATCGAATAAACTAAATCTTTTGTTGCCT 324
|||||| | ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 187 AGTGTGCTACAGAGCTTCAAGATCGTGATTTTATCGAATAAACTCAATCTTTTGTTGCCT 246
Query 325 TTCGGTCCTCTAGCAATACTAGTCCACTACTTGACAGATAATAAGGGGTGGTTCTTCTTA 384
|| |||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||||||
Sbjct 247 TTTGGTCCTCTAGCAATACTACTCCACTACTTGACTGATAATAAGGGATGGATCTTCTTA 306
Query 385 CTAAGCTTAGTAGGTATCACACCATTAGCTGAACGTCTCGGATATGCCACAGAGCAATTG 444
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 CTGAGCTTAGTAGGCATCACACCATTAGCTGAACGTCTCGGATATGCCACAGAGCAATTG 366
Query 445 TCTTGCTACACAGG-CGCAACTGTTGGAGGTCTCCTCAATGCTACATTTGGAAACGTGAT 503
|||| ||||| || | ||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 367 GCTTGTTACACGGGTC-CAACTGTTGGAGGCCTCCTAAATGCTACATTTGGAAACGTGAC 425
Query 504 TGAGCTGATCATATCGATTATCGCTCTTAAAAATGGAATGATACGCGTTGTACAGTTGAC 563
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 426 AGAGCTGATCATATCGATTTTCGCTCTTAAAAATGGAATGATACGCGTTGTACAGCTGAC 485
Query 564 GCTGCTTGGCTCGATTCTTTCTAACATTTTGCTTGTACTTGGCTGCG-CTTTTTTCTGTG 622
||||| |||||||||||||||||||| ||||||||||||||||||| ||||||| ||||
Sbjct 486 ACTGCTCGGCTCGATTCTTTCTAACATGTTGCTTGTACTTGGCTGCGCCTTTTTT-TGTG 544
Query 623 GCGGCCTTGT-GTTTCCCGGGAAAGATCAAGTCTTTGACAAAAGG-AATGCAGTTGTGAG 680
| || ||||| |||||| |||||| |||||||||||| ||||| ||||| |||||||
Sbjct 545 GTGGGCTTGTATTTTCCC-AGAAAGAGCAAGTCTTTGAC-AAAGGAAATGCCGTTGTGAA 602
Query 681 TTCGGGCA-TGCTTTTAATGGCAGTCATGGGACTACTCTTCCCCACATTTCTTCATTACA 739
|||||| | ||||||| ||||| |||||||| ||||||||||| || ||||||||||||
Sbjct 603 TTCGGG-ATTGCTTTTGATGGCTGTCATGGGGCTACTCTTCCCTGCAGTTCTTCATTACA 661
Query 740 CGCACAGCGAGGTTCATGCTGGATCATCAGAGCTTGCTCTGTCGAGATTTATCAGTTGTA 799
||||||| |||||||||||||| ||||||||||||||||| || || || | |||||| |
Sbjct 662 CGCACAGTGAGGTTCATGCTGGCTCATCAGAGCTTGCTCTCTCAAGGTTCAGCAGTTGCA 721
Query 800 TAATGCTCGTTGCCTATGCAGCTTATCTCTTTTTCCAGTTAAAGAGCCAGCCAAGTT-TT 858
||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||
Sbjct 722 TAATGCTCGTTGCCTATGCTGCTTACCTCTTTTTCCAGTTAAAGAGCCAGCCGAGTTCTT 781
Query 859 -TA-------TACCGAGAAAACTAACCAGAACGAAGAAACTTCAAACGATGATGAAGATC 910
|| ||||||| |||| |||||||| |||||| ||||| |||||||||||||||
Sbjct 782 ATACCCCTCTTACCGAGGAAACAAACCAGAATGAAGAAGCTTCAGACGATGATGAAGATC 841
Query 911 CTGAGATCTCCAAGTGGGAAGCTATCATCTGGCTTTCAATCTTTACGGCTTGGGTCTCTC 970
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 842 CTGAGATCTCCAAGTGGGAAGCTATCATCTGGCTTTCAATCTTGACGGCTTGGGTCTCTC 901
Query 971 TTCTTTCGGGCTATCTTGTCGATGCCATAGAGGGTACTTCGGTCTCATGGAAGATACCAA 1030
||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 902 TTCTTTCCGGCTATCTTGTCGATGCCATTGAGGGTGCTTCGGTCTCATGGAAGATACCAA 961
Query 1031 TCTCTTTTATCAGTGTCATCTTGCTTCCTATAGTTGGGAATGCGGCTGAGCATGCAGGTG 1090
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 TCTCTTTTATCAGTGTAATCTTGCTTCCTATAGTTGGGAATGCGGCTGAGCATGCAGGTG 1021
Query 1091 CGATTATGTTTGCCATGAAAGACAAGCTGGATCTGTCTTTGGGAGTGGCTATTGGATCCT 1150
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 CCATTATGTTTGCCATGAAAGACAAGCTGGATCTGTCTTTGGGAGTGGCTATTGGATCCT 1081
Query 1151 CCATTCAGATTTCTATGTTCGCGGTTCCTTTTTGTGTGGTGATCGGATGGATGATGGGTG 1210
| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1082 CAATTCAGATTTCTATGTTTGCGGTTCCTTTCTGTGTGGTGATCGGATGGATGATGGGTG 1141
Query 1211 CACAAATGGATCTAAATCTCCAGCTATTTGAGACGGCTACTCTGCTCATAACTGTTATTG 1270
|||||||||| |||||| |||||||||||||||| ||| | ||| | |||||||||||||
Sbjct 1142 CACAAATGGACCTAAATTTCCAGCTATTTGAGACAGCTGCACTGTTTATAACTGTTATTG 1201
Query 1271 TTGTAGCTTTCTTTCTCCAGTTAGAAGGGACATCGAATTACTTCAAAAGATTGATGCTCA 1330
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1202 TTGTAGCTTTCTTTCTCCAG---GAAGGGACATCGAATTACTTCAAAGGATTGATGCTCA 1258
Query 1331 TTCTTTGCTATTTGATAGTCGCTGCTAGTTTCTTTGTACACGAAGATCCTCATCAAG 1387
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTCTTTGTTACTTGATAGTCGCTGCTAGTTTCTTTGTACACGAAGATCCTCATCAAG 1315
> Ahg929070 jgi|Araly1|929070|scaffold_301527.1
Length=1366
Score = 1112 bits (602), Expect = 0.0
Identities = 1104/1339 (82%), Gaps = 64/1339 (5%)
Strand=Plus/Plus
Query 90 TATAAGGTGGTGTAAGGTGCCAGCTT-TTA-TGCAGGCGA-AGGTAGAAATGG-GGCTTG 145
||| || || ||||| ||||||| || ||| || | || | | || ||||||| | | |
Sbjct 20 TATGAGTTGTTGTAAAGTGCCAG-TTCTTATTG-AAGC-ACAAGTTGAAATGGTGTC-GG 75
Query 146 TTAATGAAGTTGAGCTTAAAAGCCT-TTTGGAACAAGAA-ACAGATTCCCCACAAAC-AA 202
||||||| ||||| |||||||| ||| | ||||||| | |||| || ||||||| ||
Sbjct 76 CTAATGAACTTGAGAACAAAAGCCTATTTAG-ACAAGAAGA-AGATGCCGCACAAACTAA 133
Query 203 ATGCAGCTTCTTTGATGGAGCAAGGATCAC-TTCGAGAA--------C-GCAGA-G-CTA 250
| | ||||||||| |||||||||||||||| ||| | || | || | | |||
Sbjct 134 A-GAAGCTTCTTTAATGGAGCAAGGATCACTTTCTACAAGTTTTCCCCAACACACGCCTA 192
Query 251 AAGCGCCTAGGAACAGTGTGGTCCAGAGCTTCAAGATCGTCATTTTATCG-AATAAACTA 309
|||| || | ||| || || | | ||| | |||||||| ||||| | | ||||||||
Sbjct 193 AAGCACCAAAGAATAGCGTACTTAATAGCATAAAGATCGTGATTTT-TTGTAATAAACTC 251
Query 310 AATCTTTTGTTGCCTTTCGGTCCTCTAGCAATACTAGTCCACTACTTGACAGATAATAAG 369
||||| | || ||||||||||||||||| ||| | ||||||||| ||| ||||| ||||
Sbjct 252 AATCTACTATTACCTTTCGGTCCTCTAGCCATATTGGTCCACTACATGATAGATAGTAAG 311
Query 370 GGGTGGTTCTTCTTACTAAGCTTAGTAGGTATCACACCATTAGCTGAACGTCTCGGATAT 429
|||||| | ||||| || | ||||||||| || |||||||| ||||||||||| ||||||
Sbjct 312 GGGTGGGTGTTCTTGCTGACCTTAGTAGGCATTACACCATTGGCTGAACGTCTAGGATAT 371
Query 430 GCCACAGAGCAATTGTCTTGCTACACAGG-CGCAACTGTTGGAGGTCTCCTCAATGCTAC 488
|||||||||||| || |||| ||||| || | ||||||||||||| ||||| ||||||||
Sbjct 372 GCCACAGAGCAACTGGCTTGTTACACGGGTC-CAACTGTTGGAGGCCTCCTAAATGCTAC 430
Query 489 ATTTGGAAACGTGATTGAGCTGATCATATCGATTATCGCTCTT-AAAAATGGAATGATAC 547
||| || || |||| |||||||||||||| ||| ||||| || ||||||||||||||||
Sbjct 431 ATTCGGGAATGTGACAGAGCTGATCATATCAATTTTCGCT-TTGAAAAATGGAATGATAC 489
Query 548 GCGTTGTACAGTTGACGCTGCTTGGCTCGATTCTTTCTAACATTTTGCTTGTACTTGGCT 607
| ||||| ||| ||||| | || ||||||||||| |||||||| ||||||||||||||||
Sbjct 490 GTGTTGTTCAGCTGACGTTACTAGGCTCGATTCTGTCTAACATGTTGCTTGTACTTGGCT 549
Query 608 GCG-CTTTTTTCTGTGGCGGCCTTGT-GTTTCCCGGGAAAGATCAAGTCTTTGACAAAAG 665
||| ||| ||| || || || || || ||| || ||||| ||||| |||||| ||||
Sbjct 550 GCGCCTTCTTT-TGCGGTGGGCTAGTCTTTTACC-AAAAAGACCAAGTATTTGAC-AAAG 606
Query 666 GAA-TGCAGTTGTGAGTTCGGGCA-TGCTTTTAATGGCAGTCAT-GGGACTACTCTTCCC 722
||| |||| ||||| ||| || | ||||||| ||||| ||||| |||| ||||||||||
Sbjct 607 GAATTGCAACTGTGAATTCAGG-ATTGCTTTTGATGGCTGTCATGGGGA-TACTCTTCCC 664
Query 723 CACAT-TTCTTCATTACACGCACAGCGAGGTTCATGCTGGATCATCAGAGCTTGCTCTGT 781
| | ||||||||||||| || || ||||||||||| |||||||||||||| || ||||
Sbjct 665 GGC-TGTTCTTCATTACACCCATAGTGAGGTTCATGCCGGATCATCAGAGCTAGCCCTGT 723
Query 782 CGAGATTTATCAGTTGTATAATGCTCGTTGCCTATGCAGCTTATCTCTTTTTCCAGTTAA 841
| || || | |||||| |||||||| | || ||||| ||||| ||||| ||||||||||
Sbjct 724 CAAGGTTCAGCAGTTGCATAATGCTTATAGCTTATGCTGCTTACCTCTTCTTCCAGTTAA 783
Query 842 AGAGCC-AGCCAAGTTTTTATA---C-C--GA-GA--AAACTAACCAGAACGAAGAAACT 891
|||||| | | || || ||||| | | || || || | || |||||||||||||||
Sbjct 784 AGAGCCAATCTAA-TTCTTATAGCCCTCTTGATGAGGAATCAAATCAGAACGAAGAAACT 842
Query 892 TCAAACGATGATGAAGATCCTGAGATCTCCAAGTGGGAAGCTATCATCTGGCTTTCAATC 951
|| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 843 TCTGCCGAAGATGAAGATCCTGAGATCTCCAAGTGGGAAGCTATCATTTGGCTTTCAATA 902
Query 952 TTTACGGCTTGGGTCTCTCTTCTTTCGGGCTATCTTGTCGATGCCATAGAGGGTACTTCG 1011
|| || |||||||||||||||||||| ||||||||||| ||||||||||||||| | ||
Sbjct 903 TTGACTGCTTGGGTCTCTCTTCTTTCTGGCTATCTTGTTGATGCCATAGAGGGTGCCTCA 962
Query 1012 GTCTCATGGAAGATACCAATCTCTTTTATCAGTGTCATCTTGCTTCCTATAGTTGGGAAT 1071
||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 963 GTCTCATGGAACATACCAATAGCTTTTATCAGTACCATCTTGCTTCCTATAGTTGGGAAC 1022
Query 1072 GCGGCTGAGCATGCAGGTGCGATTATGTTTGCCATGAAAGACAAGCTGGATCTGTCTTTG 1131
|| ||||| |||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 1023 GCAGCTGAACATGCAGGGGCTATCATGTTTGCCATGAAAGACAAGCTGGATCTGTCTTTG 1082
Query 1132 GGAGTGGCTATTGGATCCTCCATTCAGATTTCTATGTTCGCGGTTCCTTTTTGTGTGGTG 1191
|||||||||||||| ||||| || |||||||| ||||| ||||| || || |||||||||
Sbjct 1083 GGAGTGGCTATTGGGTCCTCGATCCAGATTTCCATGTTTGCGGTCCCATTCTGTGTGGTG 1142
Query 1192 ATCGGATGGATGATGGGTGCA-CAAATGGATCTAAATCT-CCAGCTATTTGAGACGGCTA 1249
|| ||||||||||||||| || || ||||| || || || |||||| ||||||||||| |
Sbjct 1143 ATTGGATGGATGATGGGT-CAACAGATGGACCTTAA-CTTCCAGCTTTTTGAGACGGCGA 1200
Query 1250 CT-CTGCTCATAACTGTTATTGTTGTAGCTTTCTTTCTCCAGTTAGAAGGGACATCGAAT 1308
| ||| |||| || ||||| || |||||||| ||||||||| |||||| |||| |||
Sbjct 1201 -TGCTGTTCATCACCGTTATAGTAGTAGCTTTTTTTCTCCAG---GAAGGGTCATCAAAT 1256
Query 1309 TACTTCAAAAGATTGATGCTCATTCTTTGCTATTTGATAGTCGCTGCTAGTTTCTTTGTA 1368
||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 1257 TACTTCAAAGGATTGATGCTCATTCTTTGTTATTTGATAGTAGCTGCCAGTTTCTTTGTA 1316
Query 1369 CACGAAGATCCTCATCAAG 1387
|||||||||||||||||||
Sbjct 1317 CACGAAGATCCTCATCAAG 1335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54202418635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5