BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55730.1
Length=1933
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914699 jgi|Araly1|914699|Al_scaffold_0001_4953 2111 0.0
Ahg474631 jgi|Araly1|474631|fgenesh2_kg.1__4585__AT1G55720.1 1487 0.0
Ahg929070 jgi|Araly1|929070|scaffold_301527.1 1376 0.0
> Ahg914699 jgi|Araly1|914699|Al_scaffold_0001_4953
Length=1326
Score = 2111 bits (1143), Expect = 0.0
Identities = 1266/1327 (95%), Gaps = 2/1327 (0%)
Strand=Plus/Plus
Query 273 ATGGGTTGTTGTAAAGTGCCAGCTCTTATTCAGGCCCAGGTAGAAATGGGGTTGGTTAAT 332
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGGTTGTTGTAAGGTGCCAGCTCTTATTCAGGCGCAGGTAGAAATGGGGTTGGTTAAT 60
Query 333 GATGTTGAGCACAAAAGCCTTTTTAGACGAGATACTGATTCCCCAGAAAGAAAAGCAGCT 392
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 61 GATGTTGAGCACAAAAGCCTTTTTAGACGAGATACAGATTCCCCACAAAGAAAAGCAGCT 120
Query 393 TCCTTGATGGAACAAGGATCACTTTCTGCAAGTTTTCGAGAATGCTCAACTAAAACACCT 452
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 121 TCCTTGATGGAACAAGGATCACTTTCTGCAAGTTTTCGAGAACGCGCAACTAAAACACCT 180
Query 453 AAT-AACAGTGTGCTCCAGAGCTTCAAGATTGTGATTTTATCGAATAAACTTAATCTTTT 511
|| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 181 -ATGAACAGTGTGCTACAGAGCTTCAAGATCGTGATTTTATCGAATAAACTCAATCTTTT 239
Query 512 GTTGCCTTTTGGTCCTCTGGCAATACTACTCCATTACTTGACAGATAATAAGGGATGGAT 571
|||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct 240 GTTGCCTTTTGGTCCTCTAGCAATACTACTCCACTACTTGACTGATAATAAGGGATGGAT 299
Query 572 CTTCTTATTGAGCTTAGTAGGCATCACACCATTAGCTGAACGTCTCGGATATGCCACCGA 631
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 CTTCTTACTGAGCTTAGTAGGCATCACACCATTAGCTGAACGTCTCGGATATGCCACAGA 359
Query 632 GCAATTAGCTTGTTACACTGGTTCAACTGTTGGAGGTCTCCTAAACGCTACATTTGGAAA 691
|||||| ||||||||||| ||| ||||||||||||| |||||||| ||||||||||||||
Sbjct 360 GCAATTGGCTTGTTACACGGGTCCAACTGTTGGAGGCCTCCTAAATGCTACATTTGGAAA 419
Query 692 CGTGACAGAGCTGATCATATCGATTTTCGCTCTTAAAAGTGGAATGATACGTGTTGTACA 751
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 420 CGTGACAGAGCTGATCATATCGATTTTCGCTCTTAAAAATGGAATGATACGCGTTGTACA 479
Query 752 GCTGACATTGCTCGGCTCGATACTTTCTAACATGTTACTTGTACTTGGCTGCGCCTTCTT 811
||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 480 GCTGACACTGCTCGGCTCGATTCTTTCTAACATGTTGCTTGTACTTGGCTGCGCCTTTTT 539
Query 812 TTGTGGCGGGCTTGTATTTTCCCAGAAAGAGCAAGTCTTTGACAAAGGTAATGCTGTTGT 871
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 540 TTGTGGTGGGCTTGTATTTTCCCAGAAAGAGCAAGTCTTTGACAAAGGAAATGCCGTTGT 599
Query 872 GAATTCGGGATTGCTTTTGATGGCTGTCATGGGACTACTCTTCCCCGCAGTTCTTCATTA 931
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 600 GAATTCGGGATTGCTTTTGATGGCTGTCATGGGGCTACTCTTCCCTGCAGTTCTTCATTA 659
Query 932 CACGCACAGTGAGGTTCATGCTGGGTCATCAGAGCTTGCTCTCTCAAGATTCAGCAGTTG 991
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 660 CACGCACAGTGAGGTTCATGCTGGCTCATCAGAGCTTGCTCTCTCAAGGTTCAGCAGTTG 719
Query 992 CATAATGCTCGTTGCCTATGCTGCTTACCTCTTTTTCCAGTTAAAGAGCCAGCCGAGCTC 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 CATAATGCTCGTTGCCTATGCTGCTTACCTCTTTTTCCAGTTAAAGAGCCAGCCGAGTTC 779
Query 1052 TTATACCCCTCTCACCGAGGAAACTAACCAGAACGAAGAAACTTCAGACGATGATGAAGA 1111
|||||||||||| ||||||||||| |||||||| |||||| |||||||||||||||||||
Sbjct 780 TTATACCCCTCTTACCGAGGAAACAAACCAGAATGAAGAAGCTTCAGACGATGATGAAGA 839
Query 1112 TCCTGAGATCTCCAAGTGGGAAGCTATTATCTGGCTTTCAATCTTGACGGCTTGGGTCTC 1171
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 840 TCCTGAGATCTCCAAGTGGGAAGCTATCATCTGGCTTTCAATCTTGACGGCTTGGGTCTC 899
Query 1172 TCTTCTTTCCGGCTATCTTGTTGATGCCATAGAGGGTGCTTCAGTCTCATGGAAGATACC 1231
||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 900 TCTTCTTTCCGGCTATCTTGTCGATGCCATTGAGGGTGCTTCGGTCTCATGGAAGATACC 959
Query 1232 AATCTCTTTTATCAGTGTCATCTTACTTCCTATAGTTGGGAATGCGGCCGAGCATGCAGG 1291
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 960 AATCTCTTTTATCAGTGTAATCTTGCTTCCTATAGTTGGGAATGCGGCTGAGCATGCAGG 1019
Query 1292 TGCCATCATGTTTGCCATGAAAGACAAGCTGGATCTGTCTTTGGGAGTGGCTATTGGATC 1351
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TGCCATTATGTTTGCCATGAAAGACAAGCTGGATCTGTCTTTGGGAGTGGCTATTGGATC 1079
Query 1352 CTCCATTCAGATTTCTATGTTCGCGGTTCCTTTTTGCGTGGTTATCGGATGGATGATGGG 1411
||| ||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||
Sbjct 1080 CTCAATTCAGATTTCTATGTTTGCGGTTCCTTTCTGTGTGGTGATCGGATGGATGATGGG 1139
Query 1412 TGCCCAAATGGACCTAAATTTCCAGCTATTTGAGACGGCTACTCTGTTCATAACTGTTAT 1471
||| |||||||||||||||||||||||||||||||| ||| | ||||| |||||||||||
Sbjct 1140 TGCACAAATGGACCTAAATTTCCAGCTATTTGAGACAGCTGCACTGTTTATAACTGTTAT 1199
Query 1472 TGTTGTAGCTTTCTTTCTCCAGGAAGGAACATCGAATTACTTCAAAGGATTGATGCTCAT 1531
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1200 TGTTGTAGCTTTCTTTCTCCAGGAAGGGACATCGAATTACTTCAAAGGATTGATGCTCAT 1259
Query 1532 TCTTTGCTATTTGATAGTCGCCGCTAGTTTCTTTGTACACGAAGATCCTCATCAAGATGA 1591
|||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TCTTTGTTACTTGATAGTCGCTGCTAGTTTCTTTGTACACGAAGATCCTCATCAAGATGA 1319
Query 1592 TATATAA 1598
|||||||
Sbjct 1320 TATATAA 1326
> Ahg474631 jgi|Araly1|474631|fgenesh2_kg.1__4585__AT1G55720.1
Length=1167
Score = 1487 bits (805), Expect = 0.0
Identities = 1049/1164 (90%), Gaps = 27/1164 (2%)
Strand=Plus/Plus
Query 427 TTCGAGAATGCTCAACTAAAACACCTAATAACAGTGTGCTCCAGAGCTTCAAGATTGTGA 486
|||||||| || | ||||| | |||| ||||||||| |||||||||||||||| ||||
Sbjct 17 TTCGAGAACGCAGAGCTAAAGCGCCTAGGAACAGTGTGATCCAGAGCTTCAAGATCGTGA 76
Query 487 TTTTATCGAATAAACTTAATCTTTTGTTGCCTTTTGGTCCTCTGGCAATACTACTCCATT 546
||||||| |||||||| ||||||||||||||||| |||||||| || |||||| ||||||
Sbjct 77 TTTTATCAAATAAACTCAATCTTTTGTTGCCTTTCGGTCCTCTAGCTATACTAGTCCATT 136
Query 547 ACTTGACAGATAATAAGGGATGGATCTTCTTATTGAGCTTAGTAGGCATCACACCATTAG 606
|||||||||||| |||||||||| |||||||| | |||||||||||||||||||||||||
Sbjct 137 ACTTGACAGATACTAAGGGATGGTTCTTCTTACTAAGCTTAGTAGGCATCACACCATTAG 196
Query 607 CTGAACGTCTCGGATATGCCACCGAGCAATTAGCTTGTTACACTGGTTCAACTGTTGGAG 666
|||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 197 CTGAACGTCTCGGATATGCCACAGAGCAATTGGCTTGTTACACAGGTTCAACTGTTGGAG 256
Query 667 GTCTCCTAAACGCTACATTTGGAAACGTGACAGAGCTGATCATATCGATTTTCGCTCTTA 726
| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 257 GCCTCCTAAACGCTACATTTGGAAACGTGATAGAGCTGATCATATCGATTATCGCTCTTA 316
Query 727 AAAGTGGAATGATACGTGTTGTACAGCTGACATTGCTCGGCTCGATACTTTCTAACATGT 786
||| || |||||||| ||||||||| |||| |||| |||||||| || ||||||||||
Sbjct 317 AAAACGGGATGATACGCGTTGTACAGTTGACGCTGCTTGGCTCGATTCTGTCTAACATGT 376
Query 787 TACTTGTACTTGGCTGCGCCTTCTTT-TGTGGCGGGCTTGTATTTTCCCAGAAAGAGCAA 845
| ||||||||||| |||||||| ||| |||||||| ||||| ||||||| |||||| |||
Sbjct 377 TGCTTGTACTTGGGTGCGCCTT-TTTCTGTGGCGGCCTTGTGTTTTCCCGGAAAGATCAA 435
Query 846 GTCTTTGACAAAGGTAATGCTGTTGTGAATTCGGG-ATTGCTTTTGAT-GGCTGTCATGG 903
|||||||||||||| ||||| ||||||| |||||| || |||||| || ||| |||||||
Sbjct 436 GTCTTTGACAAAGGAAATGCAGTTGTGAGTTCGGGGAT-GCTTTT-ATTGGCAGTCATGG 493
Query 904 GACTACTCTTCCCCGCAGTTCTTCATTACACGCACAGTGAGGTTCATGCTGGGTCATCAG 963
| || || |||||| | |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 494 GGCTGCTTTTCCCCACGGTTCTTCATTACACGCACAGCGAGGTTCATGCCGGGTCATCAG 553
Query 964 AGCTTGCTCTCTCAAGATTCAGCAGTTGCATAATGCTCGTTGCCTATGCTGCTTACCTCT 1023
||||||||||||||||||| | |||||| ||||||||| |||||||||| ||||| ||||
Sbjct 554 AGCTTGCTCTCTCAAGATTTATCAGTTGTATAATGCTCCTTGCCTATGCAGCTTATCTCT 613
Query 1024 TTTTCCAGTTAAAGAGCCAGCCGAGCTCTTATACCCCTCTCACCGAGGAAACTAACCAGA 1083
|||||||||||||||||||||| || | || || | |||||| || | || |||
Sbjct 614 TTTTCCAGTTAAAGAGCCAGCCAAGTT-TT-TA----T---ACCGAG-AA-C-AA--AGA 659
Query 1084 ACGAAGAAACTTCAGACGATGATGAAGATCCTGAGATCTCCAAGTGGGAAGCTATTATCT 1143
| | | | |||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 660 A--ATG----T-CAGAAGATGATGAAGATCCCGAGATCTCCAAGTGGGAAGCTATCATCT 712
Query 1144 GGCTTTCAATCTTGACGGCTTGGGTCTCTCTTCTTTCCGGCTATCTTGTTGATGCCATAG 1203
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 GGCTTTCAATTTTTACGGCTTGGGTCTCTCTTCTTTCCGGCTATCTTGTTGATGCCATAG 772
Query 1204 AGGGTGCTTCAGTCTCATGGAAGATACCAATCTCTTTTATCAGTGTCATCTTACTTCCTA 1263
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 773 AGGGTGCTTCAGTCTCATGGAAGATACCAATCTCTTTTATCAGTGTCATCTTGCTTCCAA 832
Query 1264 TAGTTGGGAATGCGGCCGAGCATGCAGGTGCCATCATGTTTGCCATGAAAGACAAGCTGG 1323
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 833 TAGTTGGGAATGCGGCCGAGCATGCAGGTGCTATTATGTTTGCCATGAAAGACAAGCTGG 892
Query 1324 ATCTGTCTTTGGGAGTGGCTATTGGATCCTCCATTCAGATTTCTATGTTCGCGGTTCCTT 1383
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 893 ATCTGTCTTTGGGAGTGGCTATTGGATCCTCAATTCAGATTTCTATGTTCGCGGTTCCTT 952
Query 1384 TTTGCGTGGTTATCGGATGGATGATGGGTGCCCAAATGGACCTAAATTTCCAGCTATTTG 1443
| || ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 953 TCTGTGTGGTGATCGGATGGATGATGGGTGTACAAATGGACCTAAATTTCCAGCTATTTG 1012
Query 1444 AGACGGCTACTCTGTTCATAACTGTTATTGTTGTAGCTTTCTTTCTCCAGGAAGGAACAT 1503
|||| |||||| |||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1013 AGACAGCTACTATGTTTATAACTGTTATTGTTGTAGCTTTCTTTCTCCAGGAAGGGACAT 1072
Query 1504 CGAATTACTTCAAAGGATTGATGCTCATTCTTTGCTATTTGATAGTCGCCGCTAGTTTCT 1563
| ||||||||||||||| ||||||| ||||||||||||||| ||||||| || || ||||
Sbjct 1073 CAAATTACTTCAAAGGACTGATGCTGATTCTTTGCTATTTGGTAGTCGCTGCCAGCTTCT 1132
Query 1564 TTGTACACGAAGATCCTCATCAAG 1587
||||||||||||||||||||||||
Sbjct 1133 TTGTACACGAAGATCCTCATCAAG 1156
> Ahg929070 jgi|Araly1|929070|scaffold_301527.1
Length=1366
Score = 1376 bits (745), Expect = 0.0
Identities = 1149/1347 (85%), Gaps = 16/1347 (1%)
Strand=Plus/Plus
Query 261 TAGCACAAGTCTATGGGTTGTTGTAAAGTGCCAGCTCTTATTCAGGCCCAGGTAGAAATG 320
||||||||| |||| |||||||||||||||||| ||||||| | || || || ||||||
Sbjct 9 TAGCACAAGGGTATGAGTTGTTGTAAAGTGCCAGTTCTTATTGAAGCACAAGTTGAAATG 68
Query 321 GGGTTGGTTAATGATGTTGAGCACAAAAGCCTTTTTAGACGAG-ATACTGATTCCCCAGA 379
| || || |||||| ||||| |||||||||| ||||||| || | | ||| || || |
Sbjct 69 GTGTCGGCTAATGAACTTGAGAACAAAAGCCTATTTAGACAAGAAGA-AGATGCCGCACA 127
Query 380 AAGAAAAGCAGCTTCCTTGATGGAACAAGGATCACTTTCTGCAAGTTTTCGAGAATGCTC 439
|| |||| |||||| || ||||| ||||||||||||||| ||||||||| || | |
Sbjct 128 AACTAAAGAAGCTTCTTTAATGGAGCAAGGATCACTTTCTACAAGTTTTCCCCAACACAC 187
Query 440 AACTAAAACACCTAATAACAGTGTGCTCCAGAGCTTCAAGATTGTGATTTTATCG-AATA 498
||||| |||| || || || || || | ||| | ||||| |||||||| | | ||||
Sbjct 188 GCCTAAAGCACCAAAGAATAGCGTACTTAATAGCATAAAGATCGTGATTTT-TTGTAATA 246
Query 499 AACTTAATCTTTTGTTGCCTTTTGGTCCTCTGGCAATACTACTCCATTACTTGACAGATA 558
|||| ||||| | || ||||| |||||||| || ||| | |||| ||| ||| |||||
Sbjct 247 AACTCAATCTACTATTACCTTTCGGTCCTCTAGCCATATTGGTCCACTACATGATAGATA 306
Query 559 ATAAGGGATGGATCTTCTTATTGAGCTTAGTAGGCATCACACCATTAGCTGAACGTCTCG 618
|||||| ||| | ||||| ||| |||||||||||| |||||||| ||||||||||| |
Sbjct 307 GTAAGGGGTGGGTGTTCTTGCTGACCTTAGTAGGCATTACACCATTGGCTGAACGTCTAG 366
Query 619 GATATGCCACCGAGCAATTAGCTTGTTACACTGGTTCAACTGTTGGAGGTCTCCTAAACG 678
|||||||||| |||||| | ||||||||||| ||| ||||||||||||| |||||||| |
Sbjct 367 GATATGCCACAGAGCAACTGGCTTGTTACACGGGTCCAACTGTTGGAGGCCTCCTAAATG 426
Query 679 CTACATTTGGAAACGTGACAGAGCTGATCATATCGATTTTCGCTCTT-AAAAGTGGAATG 737
||||||| || || |||||||||||||||||||| ||||||||| || |||| |||||||
Sbjct 427 CTACATTCGGGAATGTGACAGAGCTGATCATATCAATTTTCGCT-TTGAAAAATGGAATG 485
Query 738 ATACGTGTTGTACAGCTGACATTGCTCGGCTCGATACTTTCTAACATGTTACTTGTACTT 797
||||||||||| |||||||| || || |||||||| || ||||||||||| |||||||||
Sbjct 486 ATACGTGTTGTTCAGCTGACGTTACTAGGCTCGATTCTGTCTAACATGTTGCTTGTACTT 545
Query 798 GGCTGCGCCTTCTTTTGTGGCGGGCTTGTATTTTCCCAGAAAGAGCAAGTCTTTGACAAA 857
||||||||||||||||| || ||||| || |||| ||| ||||| ||||| |||||||||
Sbjct 546 GGCTGCGCCTTCTTTTGCGGTGGGCTAGTCTTTTACCAAAAAGACCAAGTATTTGACAAA 605
Query 858 GGTAA-TGCTGTTGTGAATTCGGGATTGCTTTTGATGGCTGTCAT-GGGACTACTCTTCC 915
|| || ||| ||||||||| ||||||||||||||||||||||| |||| |||||||||
Sbjct 606 GG-AATTGCAACTGTGAATTCAGGATTGCTTTTGATGGCTGTCATGGGGA-TACTCTTCC 663
Query 916 CCGCAGTTCTTCATTACACGCACAGTGAGGTTCATGCTGGGTCATCAGAGCTTGCTCTCT 975
| || |||||||||||||| || |||||||||||||| || ||||||||||| || || |
Sbjct 664 CGGCTGTTCTTCATTACACCCATAGTGAGGTTCATGCCGGATCATCAGAGCTAGCCCTGT 723
Query 976 CAAGATTCAGCAGTTGCATAATGCTCGTTGCCTATGCTGCTTACCTCTTTTTCCAGTTAA 1035
|||| |||||||||||||||||||| | || ||||||||||||||||| ||||||||||
Sbjct 724 CAAGGTTCAGCAGTTGCATAATGCTTATAGCTTATGCTGCTTACCTCTTCTTCCAGTTAA 783
Query 1036 AGAGCCAGCCGAGCTCTTATACCCCTC-TCACCGAGGAAACTAACCAGAACGAAGAAACT 1094
||||||| | | ||||||| ||||| | | |||||| | || |||||||||||||||
Sbjct 784 AGAGCCAATCTAATTCTTATAGCCCTCTTGA-TGAGGAATCAAATCAGAACGAAGAAACT 842
Query 1095 TCAGACGATGATGAAGATCCTGAGATCTCCAAGTGGGAAGCTATTATCTGGCTTTCAATC 1154
|| | ||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 843 TCTGCCGAAGATGAAGATCCTGAGATCTCCAAGTGGGAAGCTATCATTTGGCTTTCAATA 902
Query 1155 TTGACGGCTTGGGTCTCTCTTCTTTCCGGCTATCTTGTTGATGCCATAGAGGGTGCTTCA 1214
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 903 TTGACTGCTTGGGTCTCTCTTCTTTCTGGCTATCTTGTTGATGCCATAGAGGGTGCCTCA 962
Query 1215 GTCTCATGGAAGATACCAATCTCTTTTATCAGTGTCATCTTACTTCCTATAGTTGGGAAT 1274
||||||||||| |||||||| ||||||||||| |||||| |||||||||||||||||
Sbjct 963 GTCTCATGGAACATACCAATAGCTTTTATCAGTACCATCTTGCTTCCTATAGTTGGGAAC 1022
Query 1275 GCGGCCGAGCATGCAGGTGCCATCATGTTTGCCATGAAAGACAAGCTGGATCTGTCTTTG 1334
|| || || |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1023 GCAGCTGAACATGCAGGGGCTATCATGTTTGCCATGAAAGACAAGCTGGATCTGTCTTTG 1082
Query 1335 GGAGTGGCTATTGGATCCTCCATTCAGATTTCTATGTTCGCGGTTCCTTTTTGCGTGGTT 1394
|||||||||||||| ||||| || |||||||| ||||| ||||| || || || |||||
Sbjct 1083 GGAGTGGCTATTGGGTCCTCGATCCAGATTTCCATGTTTGCGGTCCCATTCTGTGTGGTG 1142
Query 1395 ATCGGATGGATGATGGGTGCC-CAAATGGACCTAAATTTCCAGCTATTTGAGACGGCTAC 1453
|| ||||||||||||||| | || |||||||| || |||||||| ||||||||||| |
Sbjct 1143 ATTGGATGGATGATGGGT-CAACAGATGGACCTTAACTTCCAGCTTTTTGAGACGGCGA- 1200
Query 1454 T-CTGTTCATAACTGTTATTGTTGTAGCTTTCTTTCTCCAGGAAGGAACATCGAATTACT 1512
| |||||||| || ||||| || |||||||| |||||||||||||| |||| |||||||
Sbjct 1201 TGCTGTTCATCACCGTTATAGTAGTAGCTTTTTTTCTCCAGGAAGGGTCATCAAATTACT 1260
Query 1513 TCAAAGGATTGATGCTCATTCTTTGCTATTTGATAGTCGCCGCTAGTTTCTTTGTACACG 1572
||||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||
Sbjct 1261 TCAAAGGATTGATGCTCATTCTTTGTTATTTGATAGTAGCTGCCAGTTTCTTTGTACACG 1320
Query 1573 AAGATCCTCATCAAGATGATATATAAA 1599
|||||||||||||||||| ||||||||
Sbjct 1321 AAGATCCTCATCAAGATGGTATATAAA 1347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72638097215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5