BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G55740.1 Length=2477 Score E Sequences producing significant alignments: (Bits) Value Ahg914702 jgi|Araly1|914702|Al_scaffold_0001_4956 3613 0.0 Ahg930165 jgi|Araly1|930165|scaffold_302622.1 337 3e-91 > Ahg914702 jgi|Araly1|914702|Al_scaffold_0001_4956 Length=2268 Score = 3613 bits (1956), Expect = 0.0 Identities = 2158/2259 (96%), Gaps = 0/2259 (0%) Strand=Plus/Plus Query 72 ATGACCGTTGGTGCCGGAATCAGCGTCACCGACTCAGATTTGGTGGTGCTAGGTCACCGT 131 |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1 ATGACCGTTGGTGCTGGAATCAGCGTCACCGACTCCGATTTGGTGGTGCTAGGTCACCGT 60 Query 132 GTTCTTCACGGCGTTCCGGAGAATGTCTTAGTTACCCCAGCTTCGGGAAACGCCTTAATC 191 |||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| Sbjct 61 GTTCTTCACGGCGTTCCGGAGAATGTTTTAGTTACTCCAGCTTCAAGAAACGCCTTAATC 120 Query 192 GACGGCGCGTTCATCGGCGTCACGTCAGATCAAACCGGAAGCCACCGTGTCTTCTCCCTT 251 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 121 GACGGCGCGTTCATCGGCGTCACGTCGGATCAAACCGGAAGCCACCGTGTCTTCTCCCTA 180 Query 252 GGCAAACTCGAAGACCTAAGGTTTATGTGTGTCTTCCGGTTTAAATTATGGTGGATGACT 311 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GGCAAACTCGAAGACTTAAGGTTTATGTGTGTCTTCCGGTTTAAATTATGGTGGATGACT 240 Query 312 CAAAGAATGGGGACTAATGGGAAAGAGATTCCTTGTGAGACTCAGTTTCTAATCGTAGAA 371 ||||||||||| | ||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 241 CAAAGAATGGGTAGTAATGGGAAAGAGATTCCTTGCGAGACTCAATTTCTAATCGTAGAA 300 Query 372 GCAAACCAAGGTTCTGATTTAGGAGGAAGAGATCAATCTTCTTCGTACGTTGTATTCTTA 431 ||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 301 GCAAAGGAAGGGTCTGATTTAGGAGGAGGAGATCAATCTTCTTCGTACGTTGTATTCTTG 360 Query 432 CCTATACTTGAAGGAGATTTTAGAGCTGTTCTTCAAGGGAACGAGGCTAATGAGCTAGAG 491 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 361 CCTATTCTTGAAGGAGATTTTAGAGCTGTTCTTCAAGGGAACGATGCTAATGAGCTTGAG 420 Query 492 ATTTGTCTTGAAAGTGGTGATCCAACCGTTGACCAATTCGAAGGGAGTCATTTGGTTTTT 551 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 421 ATTTGTCTTGAAAGCGGTGATCCAACCGTTGACCAATTCGAAGGCAGTCATTTGTTTTTT 480 Query 552 GTGGCTGCTGGCTCCGACCCTTTTGATGTCATTACCAAAGCTGTCAAGGCTGTTGAACAA 611 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GTGGCTGCTGGCTCCGACCCTTTTGATGTCATTACCAAAGCTGTCAAGGCTGTTGAACAA 540 Query 612 CATCTTCAAACATTTTCACACCGAGAGAGAAAGAAAATGCCAGATATGTTGAATTGGTTT 671 |||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 541 CATCTTCAGACATTTTCGCACCGAGAGAGAAAGAAAATGCCAGATATGTTGAACTGGTTT 600 Query 672 GGTTGGTGCACTTGGGATGCATTCTATACCAATGTCACAGCCAAAGACGTCAAGCAAGGA 731 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GGTTGGTGCACTTGGGATGCATTCTATACCAATGTCACAGCCAAAGACGTCAAGCAAGGT 660 Query 732 CTTGAGAGCCTCAAAGCTGGTGGGGTTACCCCAAAGTTTGTCATAATTGATGATGGATGG 791 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 661 CTTGAGAGCCTCAAAGCTGGTGGGGTTACCCCAAAATTTGTCATAATTGATGATGGATGG 720 Query 792 CAATCTGTTGGCATGGATGAGACCAGTGTAGAATTCAACGCTGATAATGCTGCCAATTTT 851 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 721 CAATCTGTTGGCATGGATGAGACTAGTGTAGAATTCAACGCTGATAATGCTGCCAATTTC 780 Query 852 GCAAACCGGTTAACTCACATCAAGGAGAATCATAAGTTTCAAAAGGATGGCAAAGAAGGC 911 ||||| ||||||||||||||||||||||| || |||||||||||||| |||||||||||| Sbjct 781 GCAAATCGGTTAACTCACATCAAGGAGAACCACAAGTTTCAAAAGGACGGCAAAGAAGGC 840 Query 912 CACCGGGTGGATGACCCTTCATTGAGTCTTGGACATGTTATCACAGACATTAAGAGTAAT 971 |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 841 CACCGGGTGGATGACCCTGCGTTGAGTCTTGGACATGTTATCACAGACATTAAGAGTAAC 900 Query 972 AATTCGCTCAAGTATGTTTATGTTTGGCATGCGATAACAGGATATTGGGGAGGAGTCAAA 1031 ||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 901 AATTCACTCAAATATGTTTATGTTTGGCATGCAATAACCGGATATTGGGGAGGAGTCAAA 960 Query 1032 CCAGGTGTTTCTGGTATGGAACACTACGAATCCAAGGTTGCGTATCCAGTTTCTTCACCA 1091 |||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||| Sbjct 961 CCAGGTGTTTCTGGTATGAAACACTACGAATCAAAGGTTTCGTATCCAGTTTCTTCACCA 1020 Query 1092 GGAGTTATGTCCAGTGAGAATTGTGGATGTTTAGAAAGCATAACTAAGAATGGACTTGGT 1151 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 1021 GGAGTTATGTCCAATGAGAATTGTGGATGTCTAGAAAGCATAACTAAGAATGGACTCGGT 1080 Query 1152 TTGGTGAATCCTGAGAAAGTCTTTAGCTTCTATAATGATCTTCACTCATACCTTGCATCC 1211 ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 1081 TTGGTGAATCCTGAGAAAGTCTTTAGCTTCTATAACGACCTTCACTCATACCTTGCATCG 1140 Query 1212 GTTGGGGTCGATGGTGTCAAAGTAGACGTCCAAAACATTCTTGAAACTCTTGGAGCTGGA 1271 |||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1141 GTTGGGATCGATGGTGTCAAAGTCGATGTCCAAAACATTCTTGAAACTCTTGGAGCTGGA 1200 Query 1272 CATGGTGGTCGTGTCAAACTTGCAAAGAAGTATCACCAGGCTTTGGAAGCTTCTATTTCA 1331 ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 1201 CATGGCGGTCGGGTCAAACTTGCAAAGAAGTATCATCAGGCTTTGGAAGCTTCCATTTCA 1260 Query 1332 AGAAACTTCCCTGACAATGGTATTATCTCTTGCATGAGTCATAACACAGATGGTCTCTAC 1391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1261 AGAAACTTCCCTGACAATGGTATTATCTCTTGCATGAGTCATAACACAGATGGTCTTTAC 1320 Query 1392 AGCGCAAAAAAGACTGCTGTTATAAGAGCATCAGACGATTTCTGGCCTAGAGACCCCGCT 1451 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1321 AGCGCAAAAAAGACTGCTGTTATAAGAGCATCAGACGATTTCTGGCCTAGAGATCCTGCA 1380 Query 1452 TCACACACGATCCACATTGCTTCTGTTGCATATAACACACTTTTCCTTGGAGAGTTTATG 1511 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1381 TCGCACACGATCCACATTGCTTCTGTTGCATATAACACACTTTTCCTTGGAGAGTTTATG 1440 Query 1512 CAGCCGGACTGGGACATGTTTCATAGTTTGCATCCGATGGCTGAATATCATGCTGCAGCT 1571 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1441 CAGCCGGATTGGGACATGTTTCATAGTTTGCATCCGATGGCTGAATATCATGCAGCAGCT 1500 Query 1572 CGCGCGGTTGGAGGATGTGCCATATATGTCAGCGACAAACCGGGACAACATGACTTCAAC 1631 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1501 CGAGCGGTTGGAGGATGTGCCATATATGTCAGCGACAAACCGGGACAACATGACTTCAAC 1560 Query 1632 CTTTTAAGAAAGCTAGTACTTCGAGACGGTTCCATACTCAGAGCAAAGCTTCCCGGAAGA 1691 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1561 CTTTTAAGAAAGCTAGTACTTCGAGACGGTTCCATACTCAGAGCAAAGCTTCCCGGAAGA 1620 Query 1692 CCAACCAGTGATTGCTTCTTCAGTGATCCAGTCAGAGACAATAAAAGTCTTCTGAAAATA 1751 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1621 CCAACCAGTGATTGCTTCTTCAGTGATCCAGTCAGAGACAATAAAAGTCTTATGAAAATA 1680 Query 1752 TGGAACCTGAACGAATTCACTGGCGTTATTGGAGTTTTCAACTGCCAAGGCGCTGGATGG 1811 |||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 1681 TGGAACCTCAACGAATTCACTGGCGTTATCGGAGTCTTCAACTGCCAAGGCGCTGGATGG 1740 Query 1812 TGTAAGAACGAGAAGAGATACCTAATCCATGACCAAGAACCTGGGACCATTTCTGGTTGT 1871 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| | Sbjct 1741 TGTAAGAACGAGAAGAGATACCTAATCCATGACCAAGAACCTGGGACAATTACTGGTTAT 1800 Query 1872 GTCCGAACCAATGATGTTCATTATCTTCATAAAGTAGCAGCCTTTGAATGGACAGGAGAT 1931 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 1801 GTCCGAACCAATGATGTTCATTATCTCCATAAAGTCGCAGCCTTTGAATGGACAGGAGAT 1860 Query 1932 TCCATTGTCTATTCCCATCTCAGAGGAGAGTTAGTGTATCTCCCAAAAGATACATCTTTA 1991 || || |||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1861 TCTATCGTCTATTCTCATCTCAGAGGAGAGTTAGTGTATCTCCCAAATGATACATCTTTA 1920 Query 1992 CCAGTGACATTGATGCCACGTGAATACGAAGTTTTCACGGTGGTTCCGGTGAAGGAATTT 2051 ||||| ||||||| | |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1921 CCAGTCACATTGAAGTCACGTGAATACGAAGTTTTCACGGTGGTTCCGGTGAAGAAATTT 1980 Query 2052 TCCGATGGAAGTAAATTTGCACCGGTGGGGCTTATGGAGATGTTTAATTCTGGAGGAGCC 2111 |||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||| Sbjct 1981 TCCGATGGAAGTAAATTTGCCCCGGTGGGACTAATGGAGATGTTTAATTCTGGAGGAGCC 2040 Query 2112 ATTGTGAGTTTAAGATACGATGACGAGGGGACTAAATTTGTCGTTAGGATGAAACTTCGA 2171 ||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||| Sbjct 2041 ATTGTGAGTTTAAGATACGATGAAGATGGGACTAACTTTGTCGTTAGGATGAAACTTCGA 2100 Query 2172 GGCAGTGGTTTGGTTGGTGTTTACTCGTCCGTTCGACGACCACGAAGTGTTACGGTGGAT 2231 || |||||||||||||| |||||||| || |||||||||||||||| ||||| ||||||| Sbjct 2101 GGTAGTGGTTTGGTTGGGGTTTACTCATCGGTTCGACGACCACGAAATGTTAAGGTGGAT 2160 Query 2232 TCAGACGACGTGGAGTACCGGTATGAACCGGAATCCGGTTTAGTTACGTTTACTTTAGGA 2291 ||||||| ||||||||||||||| |||||||||||||||| ||||||||| |||||||| Sbjct 2161 TCAGACGGTGTGGAGTACCGGTATCAACCGGAATCCGGTTTGGTTACGTTTGCTTTAGGA 2220 Query 2292 GTTCCGGAGAAAGAATTGTATCTGTGGGACGTGGTCATC 2330 ||||||||||||||||||||||| ||||||||||||||| Sbjct 2221 GTTCCGGAGAAAGAATTGTATCTTTGGGACGTGGTCATC 2259 > Ahg930165 jgi|Araly1|930165|scaffold_302622.1 Length=1390 Score = 337 bits (182), Expect = 3e-91 Identities = 197/204 (97%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 445 GAGATTTTAGAGCTGTTCTTCAAGGGAACGAGGCTAATGAGCTAGAGATTTGTCTTGAAA 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 520 GAGATTTTAGAGCTGTTCTTCAAGGGAACGAGGCTAATGAGCTAGAGATTTGTCTTGAGA 579 Query 505 G-TGGTGATCCAACCGTTGACCAATTCGAAGGGAGTCATTTGGTTTTTGTGGCTGCTGGC 563 | | |||||||||| |||||||||||||| ||||||||||||||||||||||||| |||| Sbjct 580 GCT-GTGATCCAACTGTTGACCAATTCGAGGGGAGTCATTTGGTTTTTGTGGCTGTTGGC 638 Query 564 TCCGACCCTTTTGATGTCATTACCAAAGCTGTCAAGGCTGTTGAACAACATCTTCAAACA 623 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 639 TCCGACCCTTTTGATGTCATTACCAAAGCTGTCAAGGCTGTTGAACAACATCTTCAGACA 698 Query 624 TTTTCACACCGAGAGAGAAAGAAA 647 |||||||||||||||||||||||| Sbjct 699 TTTTCACACCGAGAGAGAAAGAAA 722 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 93359190495 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5