BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55740.1
Length=2477
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914702 jgi|Araly1|914702|Al_scaffold_0001_4956 3613 0.0
Ahg930165 jgi|Araly1|930165|scaffold_302622.1 337 3e-91
> Ahg914702 jgi|Araly1|914702|Al_scaffold_0001_4956
Length=2268
Score = 3613 bits (1956), Expect = 0.0
Identities = 2158/2259 (96%), Gaps = 0/2259 (0%)
Strand=Plus/Plus
Query 72 ATGACCGTTGGTGCCGGAATCAGCGTCACCGACTCAGATTTGGTGGTGCTAGGTCACCGT 131
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGACCGTTGGTGCTGGAATCAGCGTCACCGACTCCGATTTGGTGGTGCTAGGTCACCGT 60
Query 132 GTTCTTCACGGCGTTCCGGAGAATGTCTTAGTTACCCCAGCTTCGGGAAACGCCTTAATC 191
|||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 61 GTTCTTCACGGCGTTCCGGAGAATGTTTTAGTTACTCCAGCTTCAAGAAACGCCTTAATC 120
Query 192 GACGGCGCGTTCATCGGCGTCACGTCAGATCAAACCGGAAGCCACCGTGTCTTCTCCCTT 251
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 GACGGCGCGTTCATCGGCGTCACGTCGGATCAAACCGGAAGCCACCGTGTCTTCTCCCTA 180
Query 252 GGCAAACTCGAAGACCTAAGGTTTATGTGTGTCTTCCGGTTTAAATTATGGTGGATGACT 311
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGCAAACTCGAAGACTTAAGGTTTATGTGTGTCTTCCGGTTTAAATTATGGTGGATGACT 240
Query 312 CAAAGAATGGGGACTAATGGGAAAGAGATTCCTTGTGAGACTCAGTTTCTAATCGTAGAA 371
||||||||||| | ||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 241 CAAAGAATGGGTAGTAATGGGAAAGAGATTCCTTGCGAGACTCAATTTCTAATCGTAGAA 300
Query 372 GCAAACCAAGGTTCTGATTTAGGAGGAAGAGATCAATCTTCTTCGTACGTTGTATTCTTA 431
||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 GCAAAGGAAGGGTCTGATTTAGGAGGAGGAGATCAATCTTCTTCGTACGTTGTATTCTTG 360
Query 432 CCTATACTTGAAGGAGATTTTAGAGCTGTTCTTCAAGGGAACGAGGCTAATGAGCTAGAG 491
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 361 CCTATTCTTGAAGGAGATTTTAGAGCTGTTCTTCAAGGGAACGATGCTAATGAGCTTGAG 420
Query 492 ATTTGTCTTGAAAGTGGTGATCCAACCGTTGACCAATTCGAAGGGAGTCATTTGGTTTTT 551
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 421 ATTTGTCTTGAAAGCGGTGATCCAACCGTTGACCAATTCGAAGGCAGTCATTTGTTTTTT 480
Query 552 GTGGCTGCTGGCTCCGACCCTTTTGATGTCATTACCAAAGCTGTCAAGGCTGTTGAACAA 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTGGCTGCTGGCTCCGACCCTTTTGATGTCATTACCAAAGCTGTCAAGGCTGTTGAACAA 540
Query 612 CATCTTCAAACATTTTCACACCGAGAGAGAAAGAAAATGCCAGATATGTTGAATTGGTTT 671
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 CATCTTCAGACATTTTCGCACCGAGAGAGAAAGAAAATGCCAGATATGTTGAACTGGTTT 600
Query 672 GGTTGGTGCACTTGGGATGCATTCTATACCAATGTCACAGCCAAAGACGTCAAGCAAGGA 731
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGTTGGTGCACTTGGGATGCATTCTATACCAATGTCACAGCCAAAGACGTCAAGCAAGGT 660
Query 732 CTTGAGAGCCTCAAAGCTGGTGGGGTTACCCCAAAGTTTGTCATAATTGATGATGGATGG 791
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 CTTGAGAGCCTCAAAGCTGGTGGGGTTACCCCAAAATTTGTCATAATTGATGATGGATGG 720
Query 792 CAATCTGTTGGCATGGATGAGACCAGTGTAGAATTCAACGCTGATAATGCTGCCAATTTT 851
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 721 CAATCTGTTGGCATGGATGAGACTAGTGTAGAATTCAACGCTGATAATGCTGCCAATTTC 780
Query 852 GCAAACCGGTTAACTCACATCAAGGAGAATCATAAGTTTCAAAAGGATGGCAAAGAAGGC 911
||||| ||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 781 GCAAATCGGTTAACTCACATCAAGGAGAACCACAAGTTTCAAAAGGACGGCAAAGAAGGC 840
Query 912 CACCGGGTGGATGACCCTTCATTGAGTCTTGGACATGTTATCACAGACATTAAGAGTAAT 971
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 841 CACCGGGTGGATGACCCTGCGTTGAGTCTTGGACATGTTATCACAGACATTAAGAGTAAC 900
Query 972 AATTCGCTCAAGTATGTTTATGTTTGGCATGCGATAACAGGATATTGGGGAGGAGTCAAA 1031
||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 901 AATTCACTCAAATATGTTTATGTTTGGCATGCAATAACCGGATATTGGGGAGGAGTCAAA 960
Query 1032 CCAGGTGTTTCTGGTATGGAACACTACGAATCCAAGGTTGCGTATCCAGTTTCTTCACCA 1091
|||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||
Sbjct 961 CCAGGTGTTTCTGGTATGAAACACTACGAATCAAAGGTTTCGTATCCAGTTTCTTCACCA 1020
Query 1092 GGAGTTATGTCCAGTGAGAATTGTGGATGTTTAGAAAGCATAACTAAGAATGGACTTGGT 1151
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1021 GGAGTTATGTCCAATGAGAATTGTGGATGTCTAGAAAGCATAACTAAGAATGGACTCGGT 1080
Query 1152 TTGGTGAATCCTGAGAAAGTCTTTAGCTTCTATAATGATCTTCACTCATACCTTGCATCC 1211
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1081 TTGGTGAATCCTGAGAAAGTCTTTAGCTTCTATAACGACCTTCACTCATACCTTGCATCG 1140
Query 1212 GTTGGGGTCGATGGTGTCAAAGTAGACGTCCAAAACATTCTTGAAACTCTTGGAGCTGGA 1271
|||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1141 GTTGGGATCGATGGTGTCAAAGTCGATGTCCAAAACATTCTTGAAACTCTTGGAGCTGGA 1200
Query 1272 CATGGTGGTCGTGTCAAACTTGCAAAGAAGTATCACCAGGCTTTGGAAGCTTCTATTTCA 1331
||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1201 CATGGCGGTCGGGTCAAACTTGCAAAGAAGTATCATCAGGCTTTGGAAGCTTCCATTTCA 1260
Query 1332 AGAAACTTCCCTGACAATGGTATTATCTCTTGCATGAGTCATAACACAGATGGTCTCTAC 1391
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1261 AGAAACTTCCCTGACAATGGTATTATCTCTTGCATGAGTCATAACACAGATGGTCTTTAC 1320
Query 1392 AGCGCAAAAAAGACTGCTGTTATAAGAGCATCAGACGATTTCTGGCCTAGAGACCCCGCT 1451
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1321 AGCGCAAAAAAGACTGCTGTTATAAGAGCATCAGACGATTTCTGGCCTAGAGATCCTGCA 1380
Query 1452 TCACACACGATCCACATTGCTTCTGTTGCATATAACACACTTTTCCTTGGAGAGTTTATG 1511
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TCGCACACGATCCACATTGCTTCTGTTGCATATAACACACTTTTCCTTGGAGAGTTTATG 1440
Query 1512 CAGCCGGACTGGGACATGTTTCATAGTTTGCATCCGATGGCTGAATATCATGCTGCAGCT 1571
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1441 CAGCCGGATTGGGACATGTTTCATAGTTTGCATCCGATGGCTGAATATCATGCAGCAGCT 1500
Query 1572 CGCGCGGTTGGAGGATGTGCCATATATGTCAGCGACAAACCGGGACAACATGACTTCAAC 1631
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 CGAGCGGTTGGAGGATGTGCCATATATGTCAGCGACAAACCGGGACAACATGACTTCAAC 1560
Query 1632 CTTTTAAGAAAGCTAGTACTTCGAGACGGTTCCATACTCAGAGCAAAGCTTCCCGGAAGA 1691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 CTTTTAAGAAAGCTAGTACTTCGAGACGGTTCCATACTCAGAGCAAAGCTTCCCGGAAGA 1620
Query 1692 CCAACCAGTGATTGCTTCTTCAGTGATCCAGTCAGAGACAATAAAAGTCTTCTGAAAATA 1751
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1621 CCAACCAGTGATTGCTTCTTCAGTGATCCAGTCAGAGACAATAAAAGTCTTATGAAAATA 1680
Query 1752 TGGAACCTGAACGAATTCACTGGCGTTATTGGAGTTTTCAACTGCCAAGGCGCTGGATGG 1811
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1681 TGGAACCTCAACGAATTCACTGGCGTTATCGGAGTCTTCAACTGCCAAGGCGCTGGATGG 1740
Query 1812 TGTAAGAACGAGAAGAGATACCTAATCCATGACCAAGAACCTGGGACCATTTCTGGTTGT 1871
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
Sbjct 1741 TGTAAGAACGAGAAGAGATACCTAATCCATGACCAAGAACCTGGGACAATTACTGGTTAT 1800
Query 1872 GTCCGAACCAATGATGTTCATTATCTTCATAAAGTAGCAGCCTTTGAATGGACAGGAGAT 1931
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1801 GTCCGAACCAATGATGTTCATTATCTCCATAAAGTCGCAGCCTTTGAATGGACAGGAGAT 1860
Query 1932 TCCATTGTCTATTCCCATCTCAGAGGAGAGTTAGTGTATCTCCCAAAAGATACATCTTTA 1991
|| || |||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1861 TCTATCGTCTATTCTCATCTCAGAGGAGAGTTAGTGTATCTCCCAAATGATACATCTTTA 1920
Query 1992 CCAGTGACATTGATGCCACGTGAATACGAAGTTTTCACGGTGGTTCCGGTGAAGGAATTT 2051
||||| ||||||| | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1921 CCAGTCACATTGAAGTCACGTGAATACGAAGTTTTCACGGTGGTTCCGGTGAAGAAATTT 1980
Query 2052 TCCGATGGAAGTAAATTTGCACCGGTGGGGCTTATGGAGATGTTTAATTCTGGAGGAGCC 2111
|||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 1981 TCCGATGGAAGTAAATTTGCCCCGGTGGGACTAATGGAGATGTTTAATTCTGGAGGAGCC 2040
Query 2112 ATTGTGAGTTTAAGATACGATGACGAGGGGACTAAATTTGTCGTTAGGATGAAACTTCGA 2171
||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 2041 ATTGTGAGTTTAAGATACGATGAAGATGGGACTAACTTTGTCGTTAGGATGAAACTTCGA 2100
Query 2172 GGCAGTGGTTTGGTTGGTGTTTACTCGTCCGTTCGACGACCACGAAGTGTTACGGTGGAT 2231
|| |||||||||||||| |||||||| || |||||||||||||||| ||||| |||||||
Sbjct 2101 GGTAGTGGTTTGGTTGGGGTTTACTCATCGGTTCGACGACCACGAAATGTTAAGGTGGAT 2160
Query 2232 TCAGACGACGTGGAGTACCGGTATGAACCGGAATCCGGTTTAGTTACGTTTACTTTAGGA 2291
||||||| ||||||||||||||| |||||||||||||||| ||||||||| ||||||||
Sbjct 2161 TCAGACGGTGTGGAGTACCGGTATCAACCGGAATCCGGTTTGGTTACGTTTGCTTTAGGA 2220
Query 2292 GTTCCGGAGAAAGAATTGTATCTGTGGGACGTGGTCATC 2330
||||||||||||||||||||||| |||||||||||||||
Sbjct 2221 GTTCCGGAGAAAGAATTGTATCTTTGGGACGTGGTCATC 2259
> Ahg930165 jgi|Araly1|930165|scaffold_302622.1
Length=1390
Score = 337 bits (182), Expect = 3e-91
Identities = 197/204 (97%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 445 GAGATTTTAGAGCTGTTCTTCAAGGGAACGAGGCTAATGAGCTAGAGATTTGTCTTGAAA 504
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 520 GAGATTTTAGAGCTGTTCTTCAAGGGAACGAGGCTAATGAGCTAGAGATTTGTCTTGAGA 579
Query 505 G-TGGTGATCCAACCGTTGACCAATTCGAAGGGAGTCATTTGGTTTTTGTGGCTGCTGGC 563
| | |||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 580 GCT-GTGATCCAACTGTTGACCAATTCGAGGGGAGTCATTTGGTTTTTGTGGCTGTTGGC 638
Query 564 TCCGACCCTTTTGATGTCATTACCAAAGCTGTCAAGGCTGTTGAACAACATCTTCAAACA 623
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 639 TCCGACCCTTTTGATGTCATTACCAAAGCTGTCAAGGCTGTTGAACAACATCTTCAGACA 698
Query 624 TTTTCACACCGAGAGAGAAAGAAA 647
||||||||||||||||||||||||
Sbjct 699 TTTTCACACCGAGAGAGAAAGAAA 722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93359190495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5