BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55750.1
Length=2077
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924090 jgi|Araly1|924090|scaffold_105371.1 2931 0.0
Ahg486617 jgi|Araly1|486617|fgenesh2_kg.5__2609__AT3G61420.1 1602 0.0
Ahg916046 jgi|Araly1|916046|Al_scaffold_0008_797 915 0.0
> Ahg924090 jgi|Araly1|924090|scaffold_105371.1
Length=1820
Score = 2931 bits (1587), Expect = 0.0
Identities = 1733/1804 (96%), Gaps = 7/1804 (0%)
Strand=Plus/Plus
Query 34 TTCTACAGTTGGATATGGCTGGTGGGCAAATAGAGAAGCTAGTCAAATACAAGAGCACTG 93
||||| |||||||||||||||||||||| | ||||||| |||||||||||||||| |||
Sbjct 7 TTCTAGTGTTGGATATGGCTGGTGGGCAAGTGGAGAAGCGAGTCAAATACAAGAGCTCTG 66
Query 94 TCAAGGATCCAGGAACTCCTGGATTTCTCAGAATTAGAGAAGGGATGTTGCTCTTCGTCC 153
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 TCAAGGATCCTGGAACTCCTGGATTTCTCAGAATTAGAGAAGGGATGTTGCTCTTCGTCC 126
Query 154 CTAATGATCCCAAATCAGATTCTAAGCTCAAAGTACTTACTCAGAACATCAAAAGTCAAA 213
|||||||||||||||||||||| ||||||||||| || || |||||||||||||||||||
Sbjct 127 CTAATGATCCCAAATCAGATTCAAAGCTCAAAGTGCTCACCCAGAACATCAAAAGTCAAA 186
Query 214 AATATACCAAAGAAGGATCAAATAAACCTCCTTGGCTCAATCTCACCAACAAGCAGGCAA 273
|| |||| ||||||||||||||||||||||||||||||||||| |||||||||| || ||
Sbjct 187 AAAATACAAAAGAAGGATCAAATAAACCTCCTTGGCTCAATCTGACCAACAAGCTGGGAA 246
Query 274 AGAGTCATATCTTTGAGTTTGAAAATTATCCCGACATGCATGCTTGCCGTGATTTCATCA 333
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 247 AGAGTCATATCTTTGAGTTTGAGAATTATCCTGACATGCATGCTTGCCGTGATTTCATCA 306
Query 334 CTAAGGCCCTTGCTAAATGTGAATTGGAGCCTAATAAATCCGTTGTCTCGACATCTTCCG 393
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 307 CTAATGCCCTTGCTAAATGTGAAGAGGAGCCTAATAAATCCGTTGTCTCGACATCTTCCG 366
Query 394 AGCAACTCAGTATTAAGGAATTGGAGCTGCGCTTCAAGCTTCTGAGAGAAAATAGTGAGC 453
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 367 AGCAACTCAGTATTAAGGAATTGGAGCTACGCTTCAAGCTTCTGAGAGAAAATAGTGAGC 426
Query 454 TGCAGAGATTGCATAAGCAATTTGTGGAAAGTAAAGTACTGACTGAAGATGAATTCTGGG 513
|||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 427 TGCAGAGATTACATAAGCAATTTGTGGAAAGTAAAGTACTGGCGGAAGATGAATTCTGGG 486
Query 514 CTACAAGAAAGAAATTACTTGGTAAAGATTCCATCAGAAAGTCAAAACAGCAGCTCGGGC 573
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 487 CTACAAGAAAGAAATTACTTGGTAAAGATTCCATCAGAAAGTCAAAACAGCAGGTCGGGC 546
Query 574 TTAAGAGCATGATGGTTTCTGGCATCAAACCATCTACTGATGGGCGGACTAATAGAGTGA 633
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 547 TTAAGAGCATGATGGTTTCTGGTATCAAACCATCTACTGATGGGCGGACTAATAGAGTGA 606
Query 634 CGTTTAACTTGACACCTGAGATAATTTTTCAGATTTTTGCTGAGAAGCCAGCTGTTCGGC 693
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 607 CGTTTAACTTGACACCTGAGATAATTTTTCAGATTTTTGCTGAGAAGCCGGCTGTTCGGC 666
Query 694 AGGCATTCATCAATTATGTTCCGAGTAAGATGACAGAAAAAGACTTCTGGACAAAATATT 753
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 667 AGGCATTCATCAATTATGTTCCAAGTAAGATGACAGAAAAAGACTTCTGGACAAAATATT 726
Query 754 TTAGAGCAGAATATCTTTACAGCACCAAAAATACAGCAGTAGCTGCAGCAGAAGCTGCTG 813
||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 727 TTAGAGCGGAATATCTCTACAGCACAAAAAATACAGCAGTAGCTGCAGCAGAAGCTGCTG 786
Query 814 AGGACGAGGAACTCGCTGTCTTTCTGAAGCCTGATGAGATATTGGCTCGGGAAACTCGTC 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 AGGACGAGGAACTCGCTGTCTTTCTGAAGCCTGATGAGATATTGGCTCGGGAAACTCGTC 846
Query 874 ACAAGATTAGACGGGTTGATCCAACTCTTGACATGGAGGCTGACCAGGGAGACGACTACA 933
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 AAAAGATTAGACGGGTTGATCCAACTCTTGACATGGAGGCTGACCAGGGAGACGACTACA 906
Query 934 CTCATCTTATGGACCACGGGATCCAGCGTGATGGCACCATGGATGTTGTTGAACCACAAA 993
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 907 CTCATCTTATGGACCACGGTATCCAGCGTGATGGCACCATGGATGTTGTTGAACCACAGA 966
Query 994 ATGATCAGTTTAAACGATCACTTTTGCAAGATCTTAATCGTCATGCTGCTGTTGTATTGG 1053
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 967 ATGATCAGTTTAGACGATCACTTTTGCAAGATCTTAATCGTCATGCTGCTGTTGTATTAG 1026
Query 1054 AAGGCAGAAGCATTGATGTTGAGTCAGAAGATACAAGGATTGTTGCAGAGGCTCTCACAC 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 AAGGCAGAAGCATTGATGTTGAGTCAGAAGATACAAGGATTGTTGCAGAGGCTCTCACAC 1086
Query 1114 GGGTTAAACAAGTAAGCAAAGCTGATGGTGAAACCACCAAGGACGCTAATCAGGAGAGAT 1173
|||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1087 GGGTGAAACAAGTAAGCAAAGCTGATGGCGAAACCACCAAGGACGCTAATCTGGAGAGAT 1146
Query 1174 TGGAAAGAATGTCCCGGGTAGCAGGAATGGAGGATCTTCAAGCACCACAAAATTTCCCAT 1233
|||| |||||||||||| | |||||||||||||||||||||||||||||||| ||||| |
Sbjct 1147 TGGAGAGAATGTCCCGGTTGGCAGGAATGGAGGATCTTCAAGCACCACAAAACTTCCCGT 1206
Query 1234 TGGCGCCGCTTTCTATCAAGGATCCTCGTGATTACTTTGAATCTCAACAAGGAAACGTCC 1293
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 TAGCGCCGCTTTCTATCAAGGATCCTCGTGATTACTTTGAATCTCAACAAGGAAACGTCC 1266
Query 1294 TCAATGTACCCAGAGGAGCAAAGGGCTTGAAGAGAAATGTCCATGAAGCTTATGGATTAC 1353
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1267 TCAATGTACCCAGAGGAGCAAAGGGATTGAAGAGGAATGTCCATGAAGCTTATGGATTAT 1326
Query 1354 TAAAGGAATCCATTTTAGAGATTAGAGCTACAGGATTAAGTGATCCGTTGATTAAGCCTG 1413
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1327 TAAAAGAATCCATTTTGGAGATTAGAGCTACAGGATTAAGTGATCCGTTGATTAGGCCTG 1386
Query 1414 AAGTTTC-TTTCGAGGTTTTCAGTTCGTTAACCCGAACCAT-TGCAACTGCTAAAAATAT 1471
||||||| ||| |||||||||||||||||||||||||| || | |||| || ||||||||
Sbjct 1387 AAGTTTCCTTT-GAGGTTTTCAGTTCGTTAACCCGAACTATCT-CAACGGCCAAAAATAT 1444
Query 1472 TAATGGGAAGAACCCACGAGAGAGCTTTCTGGACAGATTACCAAAGTCCACTAAGGATGA 1531
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 TATTGGGAAGAACCCACGAGAGAGCTTTCTGGACAGATTACCAAAGTCCACTAAGGATGA 1504
Query 1532 AGTTCTACACCATTGGACATCAATACAAGAATTACTGAAACATTTTTGGTCATCTTATCC 1591
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1505 AGTTCTACACCATTGGACATCAATACAAGAATTACTGAGACATTTTTGGTCATCTTATCC 1564
Query 1592 GATAACAACCACATATCTTCATACCAAGGTTGGTAAACTGAAGGATGCAATGTCCAATAC 1651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1565 GATAACAACCACATATCTTCATACCAAGGTTGGTAAACTGAAGGATGCAATGTCCAACAC 1624
Query 1652 ATATTCAAAACTTGAGGCAATGAAAGAGTCGGTGCAATCTGATCTCCGGCATCAGGTTTC 1711
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1625 TTATTCAAAACTCGAGGCAATGAAAGAGTCGGTGCAATCTGATCTCCGGCATCAGGTTTC 1684
Query 1712 TCTACTGGTTCGTCCAATGCAACAGGCTCTTGACGCTGCGTTCCATCACTACGAAGTGGA 1771
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1685 TCTACTGGTTCGTCCAATGCAACAGGCTCTTGACGCTGCGTTCCAACACTACGAAGCGGA 1744
Query 1772 TCTGCAGAGAAGAACAGCTAAGAGCGG---CGAAAGACCAAACGGCTACGTATAGAGGAC 1828
||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||
Sbjct 1745 TCTGCAGAGAAGAACAGCTAAGAGCGGTGGCGAAAGACCAAACGGCTACATATAGAAGAC 1804
Query 1829 aaaa 1832
||||
Sbjct 1805 AAAA 1808
> Ahg486617 jgi|Araly1|486617|fgenesh2_kg.5__2609__AT3G61420.1
Length=1584
Score = 1602 bits (867), Expect = 0.0
Identities = 1246/1419 (88%), Gaps = 65/1419 (5%)
Strand=Plus/Plus
Query 138 ATGTTGCTCTTCGTCCCTAATGATCCCAAATCAGATTCT-AAGCTCAAAGTACTTACTCA 196
|||||||| || ||||| |||||||| |||||||||| | ||||| ||||| | |||||
Sbjct 1 ATGTTGCTTTTTGTCCCAAATGATCCTAAATCAGATT-TGAAGCTTAAAGTTCAGACTCA 59
Query 197 GAACATCAAAAGTCAAAAATATACCAAAGAAGGATCAAATAAACCTCCTTGGCTCAATCT 256
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 60 CAACATCAAAAGTCAGAAATATACCAAACAAGGATCAAATAAACCTCCTTGGCTCAATCT 119
Query 257 CACCAACAAGCAGGCAAAGAGTCATATCTTTGAGTTTGAAAATTATCCCGACATGCATGC 316
||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GACCAATAAGCAGGGAAGGAGTCATATCTTTGAGTTTGAAAATTATCCCGACATGCATGC 179
Query 317 TTGCCGTGATTTCATCACTAAGGCCCTTGCTAAATGTGAATT-GGAGCCTAATAAATCCG 375
||| || |||||||||||||||||||||||||||||||| | |||| |||||||||| |
Sbjct 180 TTGTCGAGATTTCATCACTAAGGCCCTTGCTAAATGTGA-TGAGGAGTCTAATAAATCAG 238
Query 376 TTGTCTCGACATCTTCCGAGCAACTCAGTATTA-AGGAATTGGAGCTGCGCTTCAAGCTT 434
||||||| ||| || | |||||||| ||||| || |||| ||||| ||||||||||||
Sbjct 239 TTGTCTCTACACCTGCTGAGCAACTTAGTATGGCAG-AATTTGAGCTACGCTTCAAGCTT 297
Query 435 CTGAGAGAAAATAGTGAGCTGCAGAGATTGCATAAGCAATTTGTGGAAAGTAAAGTACTG 494
|| |||||||||||||| |||||| |||||||||||||||||||||||||||||| |||
Sbjct 298 CTTCGAGAAAATAGTGAGTTGCAGAAATTGCATAAGCAATTTGTGGAAAGTAAAGTCCTG 357
Query 495 ACTGAAGATGAATTCTGGGCTACAAGAAAGAAATTACTTGGTAAAGATTCCATCAGAAAG 554
|| ||||| ||||||||| ||||||| |||||||||||||||||| ||||||| ||||||
Sbjct 358 ACGGAAGACGAATTCTGGTCTACAAGGAAGAAATTACTTGGTAAATATTCCATTAGAAAG 417
Query 555 TCAAAACAGCAGCTCGGGCTTAAGAG-CATGATGGTTTCTGGCATCAAACCATCTACTGA 613
|||||||| ||| | |||||||| || |||||||||||| ||||||||||||||| ||||
Sbjct 418 TCAAAACAACAGATGGGGCTTAA-AGGCATGATGGTTTCAGGCATCAAACCATCTTCTGA 476
Query 614 TGGGCGGACTAATAGAGTGACGTTTAACTTGACACCTGAGATAATTTTTCAGATTTTTGC 673
||||||||||||| | |||||||||| ||| || |||||||||||||||||||||||||
Sbjct 477 TGGGCGGACTAATCGGGTGACGTTTACCTTAACGTCTGAGATAATTTTTCAGATTTTTGC 536
Query 674 TGAGAAGCCAGCTGTTCGGCAGGCATTCATCA-ATTATGTTCCGAGTAAGATGACAGAAA 732
||||||||| ||||| |||||||||||||| | |||||||||||| |||||||||||||
Sbjct 537 TGAGAAGCCGGCTGTCCGGCAGGCATTCAT-AGATTATGTTCCGAAAAAGATGACAGAAA 595
Query 733 AAGACTTCTGGACAAAATATTTTAGAGCAGAATATCTTTACAGCACCAAAAATACAGCAG 792
| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 596 AGGACTTCTGGACAAAATATTTTAGAGCAGAATATCTTTACAGCAC-AAAAA-A------ 647
Query 793 TAGCTGCAGCAGAAGCTGCTGAGGACGAGGAACTCGCTGTCTTTCTGAAGCCTGATGAGA 852
|| | |||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 648 TA-C---AGCAGAAGCTGCTGAGGATGAGGAACTCGCTGTCTTTCTGAAGCCTGACGAGA 703
Query 853 TATTGGCTCGGGAAACTCGTCACAAGATTAGACGGGTTGATCCAACTCTTGACATGGAGG 912
|||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 704 TATTGGCTCGGGAAGCTCGTCAAAAGATGAGACGGGTTGATCCAACTCTTGACATGGACG 763
Query 913 CTGACCAGGGAGACGACTACACTCATCTTATGGACCACGGGATCCAGCGTGATGGCACCA 972
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 764 CTGACCAGGGAGATGACTACACTCATCTTATGGACCATGGGATCCAGCGCGATGGCACCA 823
Query 973 -TGGATGTTGTTGAACCACAAAATGATCAGTTTAA-ACGATCACTTTTGCAAGATCTTAA 1030
|| | | |||||||||||| ||||| ||| || | | |||||||| |||||||||||
Sbjct 824 ATG-ACGCTGTTGAACCACAGAATGACCAGCATAGGAGG-TCACTTTTACAAGATCTTAA 881
Query 1031 TCGTCATGCTGCTGTTGTATTGGAAGGCAGAAGCAT--T-GATGTTGAGTCAGAAGATAC 1087
||| ||||||||||||||||||||||| ||| |||| | ||||||||||||||||| ||
Sbjct 882 TCGCCATGCTGCTGTTGTATTGGAAGGAAGATGCATCGTAGATGTTGAGTCAGAAGAGAC 941
Query 1088 AAGGATTGTTGCAGAGGCTCTCACACGGGTTAAACAAGTAAGCAAAGCTGATGGTGAAAC 1147
|||||||||||||||||||||||||||| |||||||||||||||||| | | |
Sbjct 942 GAGGATTGTTGCAGAGGCTCTCACACGGGCGAAACAAGTAAGCAAAGCT-A-----A--C 993
Query 1148 CACCAAGGACGCTAATCAGGAGAGATTGGAAAGAATGTCCCGGGTAGCAG-GAATGGAGG 1206
|| ||| | | || ||||| ||||||||||| | ||||| || ||||||
Sbjct 994 CA----GGA-G--A----GG-----TTGGAGAGAATGTCCCGTGCAGCAGAGA-TGGAGG 1036
Query 1207 ATCTTCAAGCACCACAAAATTTCCCATTGGCGCCGCTTTCTATCAAGGATCCTCGTGATT 1266
||||||||||||||||||| |||||| | || || || ||||||||||| ||||||||||
Sbjct 1037 ATCTTCAAGCACCACAAAACTTCCCACTAGCCCCCCTCTCTATCAAGGACCCTCGTGATT 1096
Query 1267 ACTTTGAATCTCAACAAGGAAACGTCCTCAATGTACCCAGAGGAGCAAAGGGCTTGAA-G 1325
|||||||||||||||||||||||||||||| || |||||||||||||| |||| | || |
Sbjct 1097 ACTTTGAATCTCAACAAGGAAACGTCCTCAGTGAACCCAGAGGAGCAA-GGGCATCAAAG 1155
Query 1326 AGAAATGTCCATGAAGCTTATGGATTACTAAAGGAATCCATTTTAGAGATTAGAGCT-AC 1384
|||||||| |||||||||||||||||||||| ||||||||||| ||||||||| | ||
Sbjct 1156 AGAAATGTATATGAAGCTTATGGATTACTAAAAGAATCCATTTTGGAGATTAGAA-TGAC 1214
Query 1385 AGGATTAAGTGATCCGTTGATTAAGCCTGAAGTTTC-TTTCGAGGTTTTCAGTTCGTTAA 1443
|||||||||||||||||| |||| ||||||||||| ||| ||||||||||||||||| |
Sbjct 1215 GGGATTAAGTGATCCGTTGGTTAAACCTGAAGTTTCCTTT-GAGGTTTTCAGTTCGTTGA 1273
Query 1444 CCCGAACCAT-TGCAACTGCTAAAAATATTAAT-GGGAAGAACCCACGAGAGAGCTTTCT 1501
||||||| || | ||||||| |||||||||| | |||||||||||||| |||||||||||
Sbjct 1274 CCCGAACTATCT-CAACTGCCAAAAATATTA-TCGGGAAGAACCCACGGGAGAGCTTTCT 1331
Query 1502 GGACAGATTACCAAAGTCCACTAAGGATGAAGTTCTACA 1540
|||||||||||||||||||||||||||||||||| ||||
Sbjct 1332 GGACAGATTACCAAAGTCCACTAAGGATGAAGTTATACA 1370
> Ahg916046 jgi|Araly1|916046|Al_scaffold_0008_797
Length=852
Score = 915 bits (495), Expect = 0.0
Identities = 648/721 (90%), Gaps = 14/721 (2%)
Strand=Plus/Plus
Query 945 GACCACGGGATCCAGCG-TGATGGCACC-ATGGATGTTGTTGAACCACAAAATGATCAGT 1002
||||| ||||||||||| | |||||||| || || ||||||||||||| || || |||
Sbjct 1 GACCATGGGATCCAGCGCT-ATGGCACCAAT-GACGTTGTTGAACCACTGAACGACCAGC 58
Query 1003 TTA-AACGATCACTTTTGCAAGATCTTAATCGTCATGCTGCTGTTGTATTGGAAGGCAGA 1061
||| | | |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 59 TTAGGA-GGTCACTTTTACAAGATCTTAATCGTCATGCTGCTGTTGTATTGGAAGGAAGA 117
Query 1062 AGCATTGATGTTGAGTCAGAAGATACAAGGATTGTTGCAGAGGCTCTCACACGGGTTAAA 1121
|||| ||||||||||||| |||||| || |||||||||||||||||||||||||| |||
Sbjct 118 TGCATCGATGTTGAGTCAGGAGATACGAGAATTGTTGCAGAGGCTCTCACACGGGTGAAA 177
Query 1122 CAAGTAAGCAAAGCTGATGGTGAAACCACCAAGGACGCTAATCAGGAGAGATTGGAAAGA 1181
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||
Sbjct 178 CAAGTAAGCAAAGCTGATGGTGAAATCACCAAGGACGCTAATCAGGAGAGGTTGGAGAGA 237
Query 1182 ATGTCCCGGGTAGCAGGAATGGAGGATCTTCAAGCACCACAAAATTTCCCATTGGCGCCG 1241
|||||||| | | ||| ||||||||||||||||||||||||||| |||||||| || ||
Sbjct 238 ATGTCCCGTGCAACAGAAATGGAGGATCTTCAAGCACCACAAAACTTCCCATTAGCACCA 297
Query 1242 CTTTCTATCAAGGATCCTCGTGATTACTTTGAATCTCAACAAGGAAACGTCCTCAATGTA 1301
|| ||||||||||| ||||||||||||||||||||||||||||||||| |||||| || |
Sbjct 298 CTCTCTATCAAGGACCCTCGTGATTACTTTGAATCTCAACAAGGAAACATCCTCAGTGAA 357
Query 1302 CCCAGAGGAGCAAAGGGC-TTGAAGAGAAATGTCCATGAAGCTTATGGATTACTAAAGGA 1360
|||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 358 CCCAGAGGAGCAAA-GGCGTCAAAGAGAAATGTCCATGAAGCTTATGGATTACTAAAAGA 416
Query 1361 ATCCATTTTAGAGATTAGAGCT-ACAGGATTAAGTGATCCGTTGATTAAGCCTGAAGTTT 1419
||||||||| |||| |||| | || |||||||||||||| |||||||| ||||||||||
Sbjct 417 ATCCATTTTGGAGAATAGA-ATGACGGGATTAAGTGATCCTTTGATTAAACCTGAAGTTT 475
Query 1420 -CTTTCGAGGTTTTCAGTTCGTTAACCCGAACCAT-TGCAACTGCTAAAAATATTAATGG 1477
|||| ||||||||||||||||| |||||||| || | ||||||| ||||||||| |||
Sbjct 476 CCTTT-GAGGTTTTCAGTTCGTTGACCCGAACTATCT-CAACTGCCAAAAATATTGTTGG 533
Query 1478 GAAGAACCCACGAGAGAGCTTTCTGGACAGATTACCAAAGTCCACTAAGGATGAAGTTCT 1537
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 534 GAAGAACCCGCGAGAGAGCTTTCTGGACAGATTACCAAAGTCCACTAAGGATGAAGTTAT 593
Query 1538 ACACCATTGGACATCAATACAAGAATTACTGAAACATTTTTGGTCATCTTATCCGATAAC 1597
||| || |||||||||||||| |||||||||| |||||||||||||||||| || |||||
Sbjct 594 ACATCACTGGACATCAATACAGGAATTACTGAGACATTTTTGGTCATCTTACCCAATAAC 653
Query 1598 AACCACATATCTTCATACCAAGGTTGGTAAACTGAAGGATGCAATGTCCAATACATATTC 1657
||| ||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 654 AACGACATATCTTAATACCAAGGTTGCTAAACTGAAGGATGCAATGTCCAATACTTATTC 713
Query 1658 A 1658
|
Sbjct 714 A 714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78123092495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5