BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55770.1
Length=528
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924096 jgi|Araly1|924096|scaffold_105377.1 776 0.0
> Ahg924096 jgi|Araly1|924096|scaffold_105377.1
Length=573
Score = 776 bits (420), Expect = 0.0
Identities = 497/533 (93%), Gaps = 10/533 (2%)
Strand=Plus/Plus
Query 1 ATGAAGCAA-TCAGCCGGAGTTCTCTTCCTCTGCATCGTTC-TCATCTCCTTCGTCACCG 58
||||||||| || |||||||| |||||||| |||||||||| || ||||||||||| |||
Sbjct 21 ATGAAGCAATTC-GCCGGAGTCCTCTTCCTTTGCATCGTTCTTC-TCTCCTTCGTCGCCG 78
Query 59 GAAATGCTAATTCCGGTATGATATCCGATCTCTGCAAACACTCCGACGATCCAAACCTCT 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 79 GAAATGCTAATTCCGGTATGATATCCGATCTCTGCAAACACTCCGACGATCCAAAACTCT 138
Query 119 GTCTCTCCAGCATAACTTCACGTCCCGAGTCCGGCGAATTCGCAGGCACCAGCAACCAGA 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 139 GTCTCTCCAGCATAACTTCACGTCCCGAGTCCGGCGAATTCGCAGGCACCAGCAGCCAGA 198
Query 179 TCGAGATCATAGCTATCTCCGCCGCATCAGCCAACGCCTCCGCCACTTCCTCCTACATCA 238
|||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 199 TCGAGATCATAGCTATCTCCGCGGCGTCAGCCAACGCCTCCGCCACTTCCTCCTATATCA 258
Query 239 A-ACAAAAGCTCAGCAACGAAGATTTGGAGCCGGCTATTGAGGACACGCTTGAGGACTGT 297
| | ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 259 AGA-AAAAGCTCAGCAACGAAGATTTGGAGCCGGCGATTGAAGACACGCTTGAGGACTGT 317
Query 298 CAGAAAGA-TTACCAAGATGCCGTGGAGCAGCTAGATGACTCGATCTCCGCCATGCTCGC 356
||||| || |||||||||||| ||||||||||| || ||||||||||| |||||||||||
Sbjct 318 CAGAA-GAATTACCAAGATGCTGTGGAGCAGCTTGACGACTCGATCTCGGCCATGCTCGC 376
Query 357 AGACGCACACACCGACGTCGATGTCTGGCTGAGCGCGGCGATCAGCGCCATCGAGTCATG 416
|||||||||| | || ||||| ||||||||||| |||||||||||||| |||||||| ||
Sbjct 377 AGACGCACACGCTGATGTCGACGTCTGGCTGAGAGCGGCGATCAGCGCTATCGAGTCTTG 436
Query 417 TGGAAGCGCATTGGGTTCACGCGCTGGGAATGATGCTGAGCTTTCCCAGAGGAACGAAG- 475
||||||||| |||| ||||||||| ||||| ||||| |||||||||||||||||| |||
Sbjct 437 TGGAAGCGCGTTGGATTCACGCGCCGGGAACGATGCAGAGCTTTCCCAGAGGAAC-AAGG 495
Query 476 TCTTTCTCAAGCTGTGCAAAAACGCTTTGATGATTAACAAAATGTTAACTTGA 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 TCTTTCTCAAGCTGTGCAAAAACGCTTTGATGATTAACAAAATGTTAACTTGA 548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19230416856
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5