BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G55770.1 Length=528 Score E Sequences producing significant alignments: (Bits) Value Ahg924096 jgi|Araly1|924096|scaffold_105377.1 776 0.0 > Ahg924096 jgi|Araly1|924096|scaffold_105377.1 Length=573 Score = 776 bits (420), Expect = 0.0 Identities = 497/533 (93%), Gaps = 10/533 (2%) Strand=Plus/Plus Query 1 ATGAAGCAA-TCAGCCGGAGTTCTCTTCCTCTGCATCGTTC-TCATCTCCTTCGTCACCG 58 ||||||||| || |||||||| |||||||| |||||||||| || ||||||||||| ||| Sbjct 21 ATGAAGCAATTC-GCCGGAGTCCTCTTCCTTTGCATCGTTCTTC-TCTCCTTCGTCGCCG 78 Query 59 GAAATGCTAATTCCGGTATGATATCCGATCTCTGCAAACACTCCGACGATCCAAACCTCT 118 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 79 GAAATGCTAATTCCGGTATGATATCCGATCTCTGCAAACACTCCGACGATCCAAAACTCT 138 Query 119 GTCTCTCCAGCATAACTTCACGTCCCGAGTCCGGCGAATTCGCAGGCACCAGCAACCAGA 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 139 GTCTCTCCAGCATAACTTCACGTCCCGAGTCCGGCGAATTCGCAGGCACCAGCAGCCAGA 198 Query 179 TCGAGATCATAGCTATCTCCGCCGCATCAGCCAACGCCTCCGCCACTTCCTCCTACATCA 238 |||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||| Sbjct 199 TCGAGATCATAGCTATCTCCGCGGCGTCAGCCAACGCCTCCGCCACTTCCTCCTATATCA 258 Query 239 A-ACAAAAGCTCAGCAACGAAGATTTGGAGCCGGCTATTGAGGACACGCTTGAGGACTGT 297 | | ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 259 AGA-AAAAGCTCAGCAACGAAGATTTGGAGCCGGCGATTGAAGACACGCTTGAGGACTGT 317 Query 298 CAGAAAGA-TTACCAAGATGCCGTGGAGCAGCTAGATGACTCGATCTCCGCCATGCTCGC 356 ||||| || |||||||||||| ||||||||||| || ||||||||||| ||||||||||| Sbjct 318 CAGAA-GAATTACCAAGATGCTGTGGAGCAGCTTGACGACTCGATCTCGGCCATGCTCGC 376 Query 357 AGACGCACACACCGACGTCGATGTCTGGCTGAGCGCGGCGATCAGCGCCATCGAGTCATG 416 |||||||||| | || ||||| ||||||||||| |||||||||||||| |||||||| || Sbjct 377 AGACGCACACGCTGATGTCGACGTCTGGCTGAGAGCGGCGATCAGCGCTATCGAGTCTTG 436 Query 417 TGGAAGCGCATTGGGTTCACGCGCTGGGAATGATGCTGAGCTTTCCCAGAGGAACGAAG- 475 ||||||||| |||| ||||||||| ||||| ||||| |||||||||||||||||| ||| Sbjct 437 TGGAAGCGCGTTGGATTCACGCGCCGGGAACGATGCAGAGCTTTCCCAGAGGAAC-AAGG 495 Query 476 TCTTTCTCAAGCTGTGCAAAAACGCTTTGATGATTAACAAAATGTTAACTTGA 528 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 496 TCTTTCTCAAGCTGTGCAAAAACGCTTTGATGATTAACAAAATGTTAACTTGA 548 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19230416856 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5