BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55790.1
Length=1769
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924098 jgi|Araly1|924098|scaffold_105379.1 1221 0.0
Ahg314794 jgi|Araly1|314794|fgenesh1_pm.C_scaffold_1003574 571 5e-162
Ahg474640 jgi|Araly1|474640|fgenesh2_kg.1__4594__AT1G55780.1 544 1e-153
> Ahg924098 jgi|Araly1|924098|scaffold_105379.1
Length=1484
Score = 1221 bits (661), Expect = 0.0
Identities = 788/846 (93%), Gaps = 21/846 (2%)
Strand=Plus/Plus
Query 15 AAAATAAAACCTTCCAAAGTAGCATCCTTTATCGCTGCAATGGCGATGAGAGAGCTCTCG 74
|||| ||||| ||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 34 AAAACAAAACTTTCCAAAGTTCCATCCTTTATCGCTCCAATGGCGATGAGAGAGTTCTCG 93
Query 75 CAGCTTAACAG-AGA-C-AGCGAC---G--G-TGATGAAGAAGTATGGGTCAAACACTAT 125
|||||| ||| ||| | || ||| | | || ||||||||||||||||||||||||
Sbjct 94 AAGCTTACCAGCAGAGCAAGAGACAATGATGAAGAAGAAGAAGTATGGGTCAAACACTAT 153
Query 126 TCATCCAACCATCAGATACTTCTCGTCGGCGAAGGAGATTTCTCATTCTCTCACAGCTTA 185
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 TCATCGAACCATCAGATACTTCTCGTCGGCGAAGGAGATTTCTCATTCTCTCACAGCTTA 213
Query 186 GCCACTCTCTTCGGCTCTGCTTCCAATATCTGCGCTTCCTCTCTCGATTCATACGATGTT 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 GCCACTCTCTTCGGCTCTGCTTCCAATATCTGCGCTTCCTCTCTCGATTCATACGATGTT 273
Query 246 GTGGTTAGAAAGTACAAGAAGGCAAGATCAAACCTTAAAACTTTGAAGAGACTTGGAGCT 305
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 274 GTGGTTAGAAAGTACAAGAAGGCAAGATCAAACATTGAAACTTTGAAGAGACTTGGAGCT 333
Query 306 TTACTTTTACATGGAGTTGATGCTACCACACTGCATTTTCACCCTGACCTTCGTTATAGA 365
||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 334 TTACTTTTACATGGAGTTGATGCAACCACACTGCATTTTCATCCTGATCTTCGTTATAGA 393
Query 366 AGATTTGATCGCGTCATCTTCAACTTCCCTCACGCCGGTTTCCACGGCAGAGAGTCTGAT 425
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 394 AGATTTGATCGTGTCATCTTCAACTTCCCGCACGCCGGTTTCCACGGCAGAGAGTCTGAT 453
Query 426 TCCTCTCTTATACGGAAGCATAGAGAACTGGTGTTTGGATTTTTCAATGGTGCAAGCCGT 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 TCCTCTCTTATACGGAAGCATAGAGAACTGGTGTTTGGATTTTTCAATGGTGCAAGCCGT 513
Query 486 TTGCTAAGAGCTAATGGGGAAGTTCATGTCTCTCACAAGAACAAAGCACCTTTTTCTGAG 545
||||||||||| |||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 514 TTGCTAAGAGCCGATGGGGAAGTTCATGTTTCTCACAAGAACAAAGCACCTTTTTGTAAC 573
Query 546 TGGAATCTCGAGGAGCTCGCTAGCAGATGCTTTCTTGTGTTGATTCAACGTGTGGCCTTC 605
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 574 TGGAATCTCGAGGAGCTCGCTAGCAGATGCTTTCTTGTGTTGATTCAACGTGTGGCGTTC 633
Query 606 GAGAAGAACAATTACCCTGGTTATGAGAATAAGAGAGGAGATGGG-CGTAGATGTGACCA 664
||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||| |
Sbjct 634 GAGAAGAGCAATTACCCTGGTTATGAGAATAAGAGAGGAGATGGGTC-TAGATGTGAC-A 691
Query 665 A-CCTTTCCTTTTGGGAGAGTGCAGTACTTTCAAGTTCAGATTCTCTCGTGTCGCTAAGG 723
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 AGCCTTTCCTTTTGGGAGAGTGCAGTACTTTCAAGTTCAGATTCTCTCGTGTCGCTAAGG 751
Query 724 AACTTTATGCAGAGAAAGTGAGATCGAGAGAAGTGAAGGAACGAGAATCAA-T-GTATCC 781
|||||||||||||||| || | |||||||||||||||||||| |||||||| | || ||
Sbjct 752 AACTTTATGCAGAGAAGGTAAAATCGAGAGAAGTGAAGGAACAAGAATCAAGTTGTGCCC 811
Query 782 GGAAGCTATTT-TAAACA-AGCAGCCAGTGTCATTTGACCATAGGTATCGCCTCCAAACA 839
||||| ||| |||| | | ||||||||||||||||| ||| |||||| ||||||||||
Sbjct 812 --AAGCT-TTTATAAATACA-CAGCCAGTGTCATTTGATCATGGGTATCCCCTCCAAACA 867
Query 840 GAATTT 845
||||||
Sbjct 868 GAATTT 873
Score = 213 bits (115), Expect = 4e-54
Identities = 147/163 (90%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 974 TTTCCTCATCTGTACGCTGGAGAGTCGCCAGAGAGACATCGCCTGCTTTGTCAAGACTTT 1033
|||||||||||||||| |||||| |||||||| |||| | |||||||||||||||||||
Sbjct 1219 TTTCCTCATCTGTACGTTGGAGAATCGCCAGAAAGACGCCACCTGCTTTGTCAAGACTTT 1278
Query 1034 CCAGTTCAAGCTAGTCAAGAACCACTATCCGAATACTCTAACCGCTGGAGTGGAGTTTCT 1093
||||||||||||||||||||||||| || | || ||||||||||| ||||||||||||
Sbjct 1279 CCAGTTCAAGCTAGTCAAGAACCACCATTTGGATGCTCTAACCGCTTTAGTGGAGTTTCT 1338
Query 1094 CGTGAAATTTATAACTGGGAAGTACGAAGAATGTCAACAAGTA 1136
| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1339 CATGAAATTTATAACTGGGAAGTACCAAGAATGTTAACAAGTA 1381
Score = 185 bits (100), Expect = 8e-46
Identities = 121/131 (92%), Gaps = 2/131 (2%)
Strand=Plus/Plus
Query 848 AGCTATCGCGGGGACTATAACCTTAGGCAAGTCCAAGATCCTCTGGTT-AAGTCAAGAGA 906
|||||||| ||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 910 AGCTATCGTGGGGACTATAACCTTAGGCAAGTCCAAGATCCTTTGGTTCAA-TCAAGAGA 968
Query 907 AAGGACATCTCCATTGGATCTTTGTTACTACCAAGAACGTAGATGTTTACAGCTCGAAGA 966
||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| |
Sbjct 969 AAGGACATCTCCATTGGATCTTTGTTATTACCAAGAACGTAGACGTTTACAGTTCGAAAA 1028
Query 967 TTCCCGTTTTC 977
| |||| ||||
Sbjct 1029 TGCCCGGTTTC 1039
> Ahg314794 jgi|Araly1|314794|fgenesh1_pm.C_scaffold_1003574
Length=1548
Score = 571 bits (309), Expect = 5e-162
Identities = 481/560 (86%), Gaps = 27/560 (5%)
Strand=Plus/Plus
Query 240 GATGTTGTGGTTAGAAAGTACAAGAAGGCAAGATCAAACCTTAAAACTTTGAAGAGACTT 299
|||| ||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 616 GATGATGTTGTTAGAAAGTACAAGAAGGCAAGATCAAATCTTGAAACTTTGAAGAGACTT 675
Query 300 GGAGCTTTACTTTTACATGGAGTTGATGCTACCACACTGCAT-TTTCACCCTGACCTTCG 358
|||||||| ||||||||||||||||||||||||| ||||| | | || ||||| ||||
Sbjct 676 GGAGCTTTCCTTTTACATGGAGTTGATGCTACCAAACTGC-TACTCCATCCTGATCTTCA 734
Query 359 TTATAGAAGATTTGATCGCGTCATCTTCAACTTCCCTCACGCCGGTTTCCACGGCAGAGA 418
|||||||||||||||||| ||||||||||||||||| ||| |||||||||| |||| |||
Sbjct 735 TTATAGAAGATTTGATCGTGTCATCTTCAACTTCCCGCACACCGGTTTCCATGGCAAAGA 794
Query 419 GTCTGATTCCTCTC--TTATAC-G--G-AAGCATAGAGAACTGGTGTTT---GGATTT-T 468
||||||| ||| || || || | | || | | | ||| | || ||| ||||| |
Sbjct 795 GTCTGATCCCTGTCAAATACACTGCTGCAA-CTTTGGGAA-T-GT-TTTAAAAGATTTAT 850
Query 469 T-CA-A-T-GGTGCAAGCCGTTTGCTAAGAGCTAATGGGGAAGTTCATGTCTCTCACAAG 524
| || | | || || | ||||||||||| |||| ||||||||||||||||||||
Sbjct 851 TACATATTCTTTG-TCTCCATATGCTAAGAGCTGATGGAGAAGTTCATGTCTCTCACAAA 909
Query 525 AACAAAGCACCTTTTTCTGAGTGGAATCTCGAGGAGCTCGCTAGCAGATGCTTTCTTGTG 584
|||||||||||||||| | | |||||||| ||||||||||||||||||||||||||||||
Sbjct 910 AACAAAGCACCTTTTTGTCATTGGAATCTTGAGGAGCTCGCTAGCAGATGCTTTCTTGTG 969
Query 585 TTGATTCAACGTGTGGCCTTCGAGAAGA-ACAATTACCCTGGTTATGAGAATAAGAGAGG 643
||||||||||||||||| |||||||||| | |||||||| ||||||||||||||||| ||
Sbjct 970 TTGATTCAACGTGTGGCATTCGAGAAGAGA-AATTACCCAGGTTATGAGAATAAGAGGGG 1028
Query 644 AGATGGG-CGTAGATGTGACCAACCTTTCCTTTTGGGAGAGTGCAGTACTTTCAAGTTCA 702
||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1029 AGATGGGTC-TAGATGTGACCAACCTTTTCTTTTGGGAGAGTGCAGTACTTTCAAGTTCA 1087
Query 703 GATTCTCTCGT-GTCGCTAAGGAACTTTATGCAGAGAAAGTGAGATCGAGAGAAGTGAAG 761
|||||||| | || ||||| || |||||||||||||| |||| || |||||||| ||||
Sbjct 1088 AATTCTCTC-TCGTGGCTAAAGAGCTTTATGCAGAGAAGGTGAAATGGAGAGAAGAGAAG 1146
Query 762 GAACGAGAATCAATGTATCC 781
||| ||||||||| ||||||
Sbjct 1147 GAAGGAGAATCAAAGTATCC 1166
> Ahg474640 jgi|Araly1|474640|fgenesh2_kg.1__4594__AT1G55780.1
Length=408
Score = 544 bits (294), Expect = 1e-153
Identities = 372/409 (91%), Gaps = 8/409 (2%)
Strand=Plus/Plus
Query 1200 ATGGATATGAGTG--A-TGAGAAATCTATGAAGAAAGCTATGAAGATCGCATCTGCAAAA 1256
|||||| | |||| | |||||||||||| || ||||||||||| ||||||||| |||||
Sbjct 1 ATGGATGTAAGTGACAGTGAGAAATCTATAAAAAAAGCTATGAAAATCGCATCTACAAAA 60
Query 1257 CCTGGTGTGAGATCGGTCTCGATTCAGGGACAGAACGATCAGTTGGTTTTATTGGGAGAA 1316
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 TCTGGTGTTAGATCGGTCTCGATTCAGGGGCAGAACGATCAGTTGGTTTTATTGGGAGAA 120
Query 1317 GGGATTGACTTAGCCGAGCTAACACGTGAGCTTAAGAAGAAAGTTTG-CATGACGACTAT 1375
|||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 121 GGGATTGACTTAGCGGAGCTAACACGTGAGCTCAAGAAGAAAGTTTGCCA-CACGACTAT 179
Query 1376 CATCACCGTTCAGGCTGCGCCACCGCAGCAG---CCACCGCAACCTCATCCTATGGGCCA 1432
||||||||||||||| ||||| ||||||||| ||||| || ||||||| ||||||||
Sbjct 180 CATCACCGTTCAGGCGGCGCCGCCGCAGCAGCCACCACCTCAGCCTCATCAAATGGGCCA 239
Query 1433 GTACAACCAGATGCCTCCGGCGAGAAGATGTACCTGTGAGATACCGAATTCAGGTTTCTG 1492
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 ATATAACCAGATGCCTCCGGCGAGAAGATGTACCTGTGAGATACCTAATTCAGGTTTCTG 299
Query 1493 CGGATTTTGTAGATCTATGAGTCAACCCAATTATCAGGTGGTACCATCGCCGTATTATCC 1552
|||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 300 CGGATTATGTAGTTCTATGAGTCAACACAATTATCAGGTGGTACCATCGCCGTATTATCC 359
Query 1553 CCCGATGCTCTATTGTCGAGATGAGACCGATGGCTGTAGAATTTTGTGA 1601
||| ||||||||||||| |||||| ||||||| |||||||||||||||
Sbjct 360 TCCGGTGCTCTATTGTCGTGATGAGTCCGATGGTTGTAGAATTTTGTGA 408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66391297035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5