BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55800.1
Length=945
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314794 jgi|Araly1|314794|fgenesh1_pm.C_scaffold_1003574 673 0.0
Ahg924098 jgi|Araly1|924098|scaffold_105379.1 274 9e-73
> Ahg314794 jgi|Araly1|314794|fgenesh1_pm.C_scaffold_1003574
Length=1548
Score = 673 bits (364), Expect = 0.0
Identities = 473/523 (90%), Gaps = 17/523 (3%)
Strand=Plus/Plus
Query 25 AGAGACAGAGACGGTGATGAAGAAGTGTGGGTCAAACACTATTCATCCAAGCACCAGATA 84
||| ||||||||| ||||||| | || ||| |||||||||||||||||||||| ||||||
Sbjct 379 AGACACAGAGACGATGATGAACACGTATGGCTCAAACACTATTCATCCAAGCATCAGATA 438
Query 85 CTTCTCGTAGGCGAAGGAGATTTCTCCTTCTCTTGCAGCTTAGCCACTTGCTTCGGCTCT 144
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 CTTCTAGTAGGCGAAGGAGATTTCTCCTTCTCTTGCAGCTTAGCCACTTGCTTCGGCTCT 498
Query 145 GCTTCCAATATCTATGCTTCCTCTCTCGATTCATACGATTATAAACCTGTTAACAAAGGT 204
|||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 499 GCTTCCAATATCTACGCTTCCTCTCTCGATTCATTCGATTATAAACCTGTTGACAAAGGT 558
Query 205 TGCAGCTTTAAGCTCGATTTCCTCAGTTGTTGCATGTCTTTTATGGTAATTAAACCAGAT 264
|| ||||||| | | |||||||||||||||||||||||||||||||||||| || |||||
Sbjct 559 TGTAGCTTTATGTTTGATTTCCTCAGTTGTTGCATGTCTTTTATGGTAATTGAAGCAGAT 618
Query 265 GATGTGGTTAGAAAATACAAGAATGCAAGATCAAATCTTGAAACATTGAAGAGACTTGGA 324
||||| |||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 619 GATGTTGTTAGAAAGTACAAGAAGGCAAGATCAAATCTTGAAACTTTGAAGAGACTTGGA 678
Query 325 GCTTTCCTTTTACATGGAGTTGATGCTACCACACTGCATTTTC-ATCCTGATCTTCGTTA 383
||||||||||||||||||||||||||||||| ||||| | || |||||||||||| |||
Sbjct 679 GCTTTCCTTTTACATGGAGTTGATGCTACCAAACTGC-TACTCCATCCTGATCTTCATTA 737
Query 384 TAGAAGATTCGATCGTGTCATCTTCAACTTCCCGCACACCGGTTTCCACAGG-AAAGAGT 442
||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 738 TAGAAGATTTGATCGTGTCATCTTCAACTTCCCGCACACCGGTTTCCAT-GGCAAAGAGT 796
Query 443 CTGATCCCTGTCAAATACAACCAGCTGCTGCAACTTTGAGGAATTTGTTTAAA-GATTTT 501
||||||||||||||||||| | ||||||||||||| ||||| | |||||| |||||
Sbjct 797 CTGATCCCTGTCAAATACA-C----TGCTGCAACTTTG-GGAATGT-TTTAAAAGATTTA 849
Query 502 TTACATGGTGCAA-G-C-C-ATATGCTAAGAGCTGATGGAGAA 540
|||||| | | | | | |||||||||||||||||||||||
Sbjct 850 TTACATATT-CTTTGTCTCCATATGCTAAGAGCTGATGGAGAA 891
Score = 313 bits (169), Expect = 2e-84
Identities = 279/328 (85%), Gaps = 24/328 (7%)
Strand=Plus/Plus
Query 539 AACTTGAGGCGTTCGAGAAGAGAAACTACCCTGGTTATGAGAATAAGAGAGGAGATGGGT 598
||| || ||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 977 AACGTGTGGCATTCGAGAAGAGAAATTACCCAGGTTATGAGAATAAGAGGGGAGATGGGT 1036
Query 599 CTAGATGTGACCAACCTTTCCTTTTGGGAGAGTGCAGTACTTTCAAGTTCAGATTCTCTC 658
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1037 CTAGATGTGACCAACCTTTTCTTTTGGGAGAGTGCAGTACTTTCAAGTTCAAATTCTCTC 1096
Query 659 GT-GTCGCCAAGGAACTTTATGCAGAGAAGGTGAA--GGA-AGTAGA-A----------- 702
| || || || || |||||||||||||||||||| ||| || ||| |
Sbjct 1097 -TCGTGGCTAAAGAGCTTTATGCAGAGAAGGTGAAATGGAGAGAAGAGAAGGAAGGAGAA 1155
Query 703 TCAAAGTGTCCCCGAGAGTTATCAACTCGGGCGATGAATAAGAAACATGCCCGTTTTGAA 762
||||||| ||||| ||| ||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1156 TCAAAGTATCCCCAAGATTTATCAACTCGGGGGATGAATAACAAACATGCCCGTTTTGAA 1215
Query 763 GACAGCTCGATACATCTTGAACTGCCAAGATGCACT-AAACGGTTCAAAAGAG--T-TT- 817
|| |||||||||||||||||| |||| ||||||||| ||| | ||||| | | ||
Sbjct 1216 GATAGCTCGATACATCTTGAATTGCCCAGATGCACTGAAA-GAA-CAAAACATCATCTTT 1273
Query 818 CTCTTGAAATGCATAATGGAGAATTACA 845
||||||||||||||||||||||||||||
Sbjct 1274 CTCTTGAAATGCATAATGGAGAATTACA 1301
Score = 143 bits (77), Expect = 3e-33
Identities = 87/92 (95%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 852 GTACAAGCTAGCCAAGAACCGTTCCCTGAACGCTCTCTCCGATTCAGAGGAGTTTCTCAT 911
||||||||||| |||||||||||||| ||||||||||||| ||||| ||||||||||||
Sbjct 1387 GTACAAGCTAGTCAAGAACCGTTCCCCAAACGCTCTCTCCGCTTCAGTGGAGTTTCTCAT 1446
Query 912 GGAATTCATAACGGGAGAGTACGAAAAATGTT 943
||||||||||||||||||||||||||||||||
Sbjct 1447 GGAATTCATAACGGGAGAGTACGAAAAATGTT 1478
> Ahg924098 jgi|Araly1|924098|scaffold_105379.1
Length=1484
Score = 274 bits (148), Expect = 9e-73
Identities = 178/192 (93%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 262 GATGATGTGGTTAGAAAATACAAGAATGCAAGATCAAATC-TTGAAACATTGAAGAGACT 320
|||| |||||||||||| |||||||| ||||||||||| | ||||||| |||||||||||
Sbjct 268 GATGTTGTGGTTAGAAAGTACAAGAAGGCAAGATCAAA-CATTGAAACTTTGAAGAGACT 326
Query 321 TGGAGCTTTCCTTTTACATGGAGTTGATGCTACCACACTGCATTTTCATCCTGATCTTCG 380
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 327 TGGAGCTTTACTTTTACATGGAGTTGATGCAACCACACTGCATTTTCATCCTGATCTTCG 386
Query 381 TTATAGAAGATTCGATCGTGTCATCTTCAACTTCCCGCACACCGGTTTCCACAGGAA-AG 439
|||||||||||| ||||||||||||||||||||||||||| ||||||||||| || | ||
Sbjct 387 TTATAGAAGATTTGATCGTGTCATCTTCAACTTCCCGCACGCCGGTTTCCAC-GGCAGAG 445
Query 440 AGTCTGATCCCT 451
|||||||| |||
Sbjct 446 AGTCTGATTCCT 457
Score = 241 bits (130), Expect = 9e-63
Identities = 145/152 (95%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 539 AACTTGAGGCGTTCGAGAAGAGAAACTACCCTGGTTATGAGAATAAGAGAGGAGATGGGT 598
||| || ||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 620 AACGTGTGGCGTTCGAGAAGAGCAATTACCCTGGTTATGAGAATAAGAGAGGAGATGGGT 679
Query 599 CTAGATGTGACCAA-CCTTTCCTTTTGGGAGAGTGCAGTACTTTCAAGTTCAGATTCTCT 657
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 CTAGATGTGA-CAAGCCTTTCCTTTTGGGAGAGTGCAGTACTTTCAAGTTCAGATTCTCT 738
Query 658 CGTGTCGCCAAGGAACTTTATGCAGAGAAGGT 689
|||||||| |||||||||||||||||||||||
Sbjct 739 CGTGTCGCTAAGGAACTTTATGCAGAGAAGGT 770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35073083640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5