BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55820.1
Length=1979
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314795 jgi|Araly1|314795|fgenesh1_pm.C_scaffold_1003575 1376 0.0
> Ahg314795 jgi|Araly1|314795|fgenesh1_pm.C_scaffold_1003575
Length=3114
Score = 1376 bits (745), Expect = 0.0
Identities = 873/931 (94%), Gaps = 24/931 (3%)
Strand=Plus/Plus
Query 865 AGAAGAAACATCAACAGTTTCTGAAGATAAGGATTATGGGATATCAAATTCTGCAACTGG 924
||||||| |||||||| ||||||||| |||||||||||||||| ||||||||||| ||||
Sbjct 2199 AGAAGAAGCATCAACATTTTCTGAAGTTAAGGATTATGGGATAACAAATTCTGCACCTGG 2258
Query 925 AGCTGAGCCTGTGGTGCACTCGGATCACATTGTCCCACCTGTAGAAGAAGTACCGAAGGA 984
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2259 AGCTGAGCCAGTGGTGCACTCGGATCACATTGTCCCACCTGTAGAAGAAGTACTGAAGGA 2318
Query 985 GGAAGCTTTATCAAACACAGAAACTCATCAAATTGCTTATGGTCAAGAAGCTCCACTCAG 1044
||||||||||||||||||||||||||||| || || | |||||||||||
Sbjct 2319 GGAAGCTTTATCAAACACAGAAACTCATC-AA------AT--T------GCTCCACTCAG 2363
Query 1045 TGTGTTTGGTCTTGTCCCCTCGTTGTCAGCAATAGGCCAACCCGTTAACACAGAAGCAGC 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2364 TGTGTTTGGTCTTGTCCCCTCGTTGTCAGCAATAGGCCAACCCGTTAACACAGAAGCAGC 2423
Query 1105 GGAGACTCAGCCCGGAAATTCCAACTCTCCACCTATTTCATTAGTATCATATCCTCCAGA 1164
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2424 AGAGACTCAGCCCGGAAATTCCAACTCTCCAGCTATTTCATTAGTATCATATCCTCCAGA 2483
Query 1165 TCAGAGCTCCATAGCAGCAGCCACTCAACAGACAAATTTTCTTAGGCAGCAATACCCTCC 1224
|||||||||||||||||||||| |||||||| |||||||||||||||||||||| || ||
Sbjct 2484 TCAGAGCTCCATAGCAGCAGCCTCTCAACAGGCAAATTTTCTTAGGCAGCAATATCCACC 2543
Query 1225 CAATTTCTTCCCTTACGG---CTATTACTCACCGTATTATATGCCACCGCCGTACATTCA 1281
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 2544 CAATTTCTTCCCTTACGGTCCCTATTACTCACCGTATTATATGCCACCGCCATACATTCA 2603
Query 1282 CCAGTTCTTGAGCCCAAACGGGATCCCTCAGCAGTCTTATTTTCCACAAGGAGCTGCTCT 1341
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 2604 CCAGTTCTTGAGCCCAAACGGGATCCCTCAGCAGTCTTTTTTTCCACCAGGAGCTGCTCT 2663
Query 1342 AACAGCACCTTCTCATGCAAAACCAGTTGACAACACTGAAAACCCTCCCACCACAAACCC 1401
||||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||
Sbjct 2664 AACAGCACCTTCTCATGTAAACCCAGTAGGCAACACTGAAAACCCTCCCACCACAAACCC 2723
Query 1402 TTACCTACACACTTCTCCCATGGTTGCTAGCAGCATCCCATCTACAACCACCTTAAATTC 1461
||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||
Sbjct 2724 TTACCTACACACTTCTCCCATGGTTGCTAGCAGCATCCCATCTGCAACCGCCTTCAATTC 2783
Query 1462 TATCCATAGTGAAGAAAAGGCATCTCACCTGACTGAAAGTGCAGCTGCATGGATTGGGCA 1521
|||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||
Sbjct 2784 TATCCATAGTGAAGAAAAGGCATCTCCCCAGACTGAAAGTGCAGCTACATGGATTGGGCA 2843
Query 1522 GGGATTTGGCAACCTGCAGGTGAATCCAATGTATAACCTAGCATACCAAGGTCAGCCACT 1581
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 2844 GGGATTTGGCAACCTGCAGGTGAATCCAATGTACAACCTAGCATTCCAAGGTCAGCCACT 2903
Query 1582 TGGTTTTCCAGTCGTGCAGGCTGGTCATGGTGGCCTCATGGGAATGCACCAACCAACACA 1641
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2904 TGGTTTTCCGGTCGTGCAGGCTGGTCATGGTGGCCTCATGGGAATACACCAACCAACACA 2963
Query 1642 GCCCATGGCAGCTGCTTCAACTACATATCAGACCTTACC---ACC---ACCGCCACACAC 1695
||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 2964 GCCCATGGCTGCTGCTTCAACTACATATCAGACCTTACCGCCACCGCCACCGCCACACAC 3023
Query 1696 AACAACGGCTATGGGTGAACCCATAGGACACCCGCACATTGCTTATCAGCAACCTCAAGC 1755
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3024 AACAACAGCTATGGGTGAACCCATAGGACACCCGCACATTGCTTATCAGCAACCTCAAGC 3083
Query 1756 TGCTCTAACGAATTGGGTTAACAACTATTAG 1786
| | |||||||||||||||||||||||||||
Sbjct 3084 TACCCTAACGAATTGGGTTAACAACTATTAG 3114
Score = 1127 bits (610), Expect = 0.0
Identities = 735/793 (93%), Gaps = 17/793 (2%)
Strand=Plus/Plus
Query 88 GGTTTCGATTCCTTACCATCTCCGCAAAACCCTTCAGAAAATCAGAGAGTA-TACCGGAA 146
||||||||||||||||| |||||||||||||||||||| || |||||| | |||||| |
Sbjct 1374 GGTTTCGATTCCTTACCGTCTCCGCAAAACCCTTCAGAGTATTAGAGAG-ATTACCGGCA 1432
Query 147 AGCAGCACTCGGATGAGGATATCTTTGCCGTCTATAAGGATTCCTTCAATGATCCTCATG 206
|||||||||| |||||||||||||| || ||||||||||||||||||||||||||| |||
Sbjct 1433 AGCAGCACTCCGATGAGGATATCTTCGCTGTCTATAAGGATTCCTTCAATGATCCTTATG 1492
Query 207 AGACCGCTCAGAAGCTCCTCTTCTTAGATACATTTCATGAGGTGAGAAGTAAAAGGGAGA 266
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 AGACCGCCCAAAAGCTCCTCTTCTTAGATACATTTCATGAGGTGAGAAGTAAAAGGGAGA 1552
Query 267 AAAAGAAGGA-GC-----CTATAGTGCCAGTTACACAACCAAGTGGCAGAGGTGGTCGGA 320
|||||||||| || ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1553 AAAAGAAGGAGGCAAGTAATATAGTGCCAGTTACACAAGCAAGTGGCAGAGGTGGTCGGA 1612
Query 321 GGAACTTTGCTTCAAGTAACTCTTATCAAGGTAGTGGAAGAAATGCTTCTTTTAAAAGGG 380
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1613 GGAACTTTGCTTCAAGTAACTCTTATCAAGGTAATGGAAGAAATGCATCTTTTAAAAGGG 1672
Query 381 AAAATGGAGCTAATCATGTAACAAGAGGTTCTAGAACTGCTCAGCCTGCCACTAACAAAG 440
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1673 AAAATGGAGCTAATCATGTAACAAGAGGTTCTAGAACTGCTCTGCCTGTCACTAACAAAG 1732
Query 441 CAAG---C---AACATCACAGTACCTAATGAAACAAAGGTTTCTGGTCCTGCTAGTATTC 494
|||| | |||||||||||||||||||||| |||||||||||||||| ||||| |||
Sbjct 1733 CAAGCAACAATAACATCACAGTACCTAATGAAATAAAGGTTTCTGGTCCTACTAGTCTTC 1792
Query 495 CGAGTGAGGTCAGCAATC---ATAAAGCTCAAGATGATCCTTCTTTGATTTCTGCTTCAC 551
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1793 CGAGTGAGGTCAGCAATCATGATAAAGTTCAAGATGATCCTTCTTTGATTTCTGCTTCAC 1852
Query 552 GTTGCAGTAGCAAGTCAGATCAAGCCATTGAAATTGAGACTGCGTCCAAACAAGGCAAAA 611
||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1853 GTTGCAGTAGCCAGTCAGATCAAGCCACAGAAATCGAGACTGCGTCCAAACAAGGCAAAA 1912
Query 612 ATCAATCGCTTCCTAAGCCAGATGTTAGCGAACAGTCACACGTAACATTCCCTTTCCACC 671
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1913 CTCAATCGCTTCCTAAGTCAGATGTTAGCCAACAGTCACACGTAACATTCCCTTTCCACC 1972
Query 672 TTCAGGTTGCCAAAGGACTGCAAAATGGTCTGACGTTTGGCAGTTTTGATTCCAATTTTG 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1973 TTCAGGTTGCCAAAGGACTGCAAAATGGTCTGACGTTTGGCAGTTTTGATTCCAACTTTG 2032
Query 732 TGAAAGAGGTATCTTCTAGCAATGGTGCTAGTGGGGGATATGACTCAAATTTTGAGTCTT 791
|||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||| || |
Sbjct 2033 TGAAAGAGGTGTCTTCTAACAATGGTGCTAGTGGTGGAGATGACTCAAATTTTGAATCGT 2092
Query 792 CTCACGGGACAGGGGATGATGAGAGGGAATCTTCTCCCACTACCAATGGTATTACTGGGG 851
|| | ||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||
Sbjct 2093 CTGATGGGACAGGGGATGATGAGAAGGAACCTTCTCCCACTACCAATGGTATTCCTGGGG 2152
Query 852 TTGCTTCGGCTAG 864
||||||| |||||
Sbjct 2153 TTGCTTCTGCTAG 2165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74390248485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5