BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55830.2
Length=1661
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914712 jgi|Araly1|914712|Al_scaffold_0001_4966 2122 0.0
> Ahg914712 jgi|Araly1|914712|Al_scaffold_0001_4966
Length=1512
Score = 2122 bits (1149), Expect = 0.0
Identities = 1397/1513 (92%), Gaps = 32/1513 (2%)
Strand=Plus/Plus
Query 134 ATGGAGGAGGAATCGCGAGATATACTGATGACGACGTTGATTGAATCTGGGGTTTCGATT 193
|||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| ||||
Sbjct 1 ATGGAGGAGGAATCGCGAGATATACTGATGTCGACGCTGACGGAATCTGGGGTTTTGATT 60
Query 194 CCCGGAGATTTCACTTCCGTTAGCGAATTTACTCCGGAGGCGTTAGTATCGATTTGTGCT 253
|||||||||||| |||||||| | ||||||||||||||||||||||||||||| | ||||
Sbjct 61 CCCGGAGATTTCTCTTCCGTTGGTGAATTTACTCCGGAGGCGTTAGTATCGATCTCTGCT 120
Query 254 CAGCTGCTCAATCTCATTGACCCATCGGCGTCGTTTTCCGATGAGCTCCCTGATTCTCTC 313
||| |||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 121 CAGTTGCTAAATCTCATTGACCCATCAGCCTCGTTTTCCGATGAGCTCCCTGATTCTCTC 180
Query 314 CCCGAAAGGTTTAGGATCTGCACCGATATCGCTCATTCTGTGAAGAATCTAGGCTACATC 373
||||||||||||||||||||||||||||| || || ||||||||||||||||| ||||||
Sbjct 181 CCCGAAAGGTTTAGGATCTGCACCGATATTGCCCAGTCTGTGAAGAATCTAGGTTACATC 240
Query 374 AACGATATGAGTTATTAT---A---------------AGTTTCTGCATCCATCTGAAGAT 415
||||| |||||||||||| | |||||||||||||||||||||||
Sbjct 241 AACGACATGAGTTATTATAAGATGTGTTGCTTGCGGCAGTTTCTGCATCCATCTGAAGAT 300
Query 416 GATTCTTATAGGTTGGTTAGGTTTCTGGTTGAGAGGCTTTCGGAGATTAGTGAAGGAAGA 475
|| || |||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 301 GACTCGTATAGGTTGGTTAGGTTTCTGGTTGAGAGGCTTTCGGAGAAAAATGAAGGAAGA 360
Query 476 AAAACTT-TGACGGCTGGTGATATAGCTAGCAGGCCAAAGATGGAGACTTTCAGAGATAT 534
||||||| | ||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 361 AAAACTTCT-ACGGCTGGTGATATAGCTAGCAGGCCAAAGATGGAGAATTTCAGAGGTAT 419
Query 535 TTCAGATGACATGATGGTGAATGAGGACAAGGATGAGACTTTCGATATGCATATACAGAA 594
|||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 420 TTCAGAAGACATGATGGTGAAGGAGGAAAAGGATGAGACTTTTGATATGCATATACAGAA 479
Query 595 GGTTGAAGCTGTCTTAAAAGATCTCACAATGACTAGTGAAAAATCTCATTCATCTGACTC 654
|||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||
Sbjct 480 GGTTGAAGCTGTCTTAAAAGATCTTACAATGACTAGTGAAATCTCTCATTCACCTGACTC 539
Query 655 TCTCGCAAAAAATACCTCAGCCAAT-GTT--G--A--CTT---CTC--CTCCCAAAAGAC 702
||| ||||||||||| ||| ||||| ||| | | || ||| ||| ||||| ||
Sbjct 540 TCTTGCAAAAAATACATCAACCAATGGTTCCGCCATTGTTGACCTCTTCTCTCAAAACAC 599
Query 703 AGATGATCCTGTTACTGATGTACGTTCTGATCTTTCTTTGAGAGATTCATCTAGATGTGA 762
||||||||||||||||||||||| || ||||||||||||||||| |||||| ||| |||
Sbjct 600 AGATGATCCTGTTACTGATGTACCATCGGATCTTTCTTTGAGAGAGTCATCTGGATATGA 659
Query 763 AGAAAATTCTTATGAAGACCCGTTTGAGACAAATTATGAGACTGTTGAGTTACAGAATCA 822
||||||| ||||||| ||||||| || || ||||||||||||||||||||||||||||||
Sbjct 660 AGAAAATCCTTATGAGGACCCGTCTGCGATAAATTATGAGACTGTTGAGTTACAGAATCA 719
Query 823 ACATGATGTACTCTTGGAGGAACTGGAATCTGGATCTTCACAGCTATGCAGTCTTGAAAG 882
|||| ||||||||||||||||||||||||||||||||||| |||||| || |||||||||
Sbjct 720 ACATAATGTACTCTTGGAGGAACTGGAATCTGGATCTTCAGAGCTATACATTCTTGAAAG 779
Query 883 CGAGCTGGAGTTGTTGCAGATGGCTGCGGAGAGGTTATTGGATGACAAAAAGCCGGGTGG 942
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 780 CGAGCTGGAGTTGTTGAAGGTGGCTGCGGAGAGGTTATTGGATGACAAACAGCCGGGTGG 839
Query 943 GTCATATCTCGAACAGCTTAATCAACAACTAGTGGTCAAAAGGTGTAATATCATGGATCT 1002
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 840 GTCATATCTCGAACAGCTTAATCAACAACTAGTGGTCAAAAGGTGTAATATCATGGATGT 899
Query 1003 TAAAAAGCAATGGGACGATGTAAGGCTGACTCTGGAAACTAAAAAGCTACTTCTCTTGGA 1062
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 900 TAAAAGGCAATGGGACGATGTAAGGCTGACTTTGGAAACTAAAAAGCTACTTCTCTTGGA 959
Query 1063 CCAACTTCATGTGGAGGAGCCAGAGGCTAAAGAGAAATTCCATAAGTTGAGAAAGACTGA 1122
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 960 CCAACTTCATGTGGAGGAGCCAGAGGCTAAAGAGAAATTCCATCGGTTGAGAAAGACTGA 1019
Query 1123 ACTGGATTTACAATCTCTCTCATCAGAAATTCAAAAGAGGGAAGATGAACGGTGTAACCT 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ACTGGATTTACAATCTCTCTCATCAGAAATTCAAAAGAGGGAAGATGAACGGTGTAACCT 1079
Query 1183 TTACAATGAACTTGAGAGGCAGCCAAAAGCAGCGCCGAGGAAATCATATATACATGGGAT 1242
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1080 GTACAATGAACTTGAGAGGCAGCCAAAAGCAGCGCCTCGGAAATCATATATCCATGGGAT 1139
Query 1243 TAAAGAAATAACAAAAAATAGCCGTAAACTGGACACTGATATTCAGAGGATTTCAGGGGA 1302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TAAAGAAATAACAAAAAATAGCCGTAAACTGGACACTGATATTCAGAGGATTTCAGGGGA 1199
Query 1303 GACCAGGGAGCTACAATTAGAGAAAAACTCAATCCAAGAACGCCTGCACCGATCATATGC 1362
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1200 GACCAGGGAGCTACAATTAGAGAGTAACTCAATCCAAGAACGCCTGCACCGGTCATATGC 1259
Query 1363 TGTTGTGGATGAAATGGTTACAAGGGAAGTGAAGAAAGACCCAGCAGTACGACAAGTCTA 1422
| |||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 1260 TATTGTGGATGAAATGGTTACAAGAGAAGTGAAAAAAGACCCAGCAGTACGACAGGTCTA 1319
Query 1423 CAAGCTACTGACCAGTATTCACAGTATATTTGAGCAAATCTCTGAGAAAATTCTCATGAC 1482
|||||||||||||||||| |||||||| || |||||||||||||||||||| ||||||||
Sbjct 1320 CAAGCTACTGACCAGTATCCACAGTATCTTCGAGCAAATCTCTGAGAAAATCCTCATGAC 1379
Query 1483 TGATCGGTTTAGAAGAGAAACAGTTGATTATGAAAAGAAGTTGGGGTCCATCACAGCTCG 1542
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1380 TGATCGGTTTAGAAGAGAGACAGTCGATTATGAAAAGAAGTTGGGGTCCATCACAGCGCG 1439
Query 1543 AGGCATGAGTTTGGAGAAATTACAAGCCGATCTGGATGCCATAAGGAAAGAAAACGAAAG 1602
||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1440 AGGCATGAGTTTGGAAAAATTAAAAGCCGATCTGGATGCCATCAGGAAAGAAAACGAAAG 1499
Query 1603 CCTTAAGAAATAA 1615
|||||||||||||
Sbjct 1500 CCTTAAGAAATAA 1512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62277550575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5