BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55840.1
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924105 jgi|Araly1|924105|scaffold_105386.1 1622 0.0
> Ahg924105 jgi|Araly1|924105|scaffold_105386.1
Length=1018
Score = 1622 bits (878), Expect = 0.0
Identities = 975/1022 (95%), Gaps = 6/1022 (1%)
Strand=Plus/Plus
Query 270 GAGATCTCTAGAGTGAGAAAATGAGCATCACTAATGAAGAAGCAGTGAAGCAATTGCGTG 329
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 GAGATCTCTAGAGAGAGAAAATGAGCATCACTAATGAAGAAGCAGTGAAGCAATTACGTG 60
Query 330 CTTTAATGGAAGATGTTGATGATTCACTCAGAGAGTCGTATCGGAACATTCATCAAGGGT 389
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 CTTTAATGGAAGACGTTGATGATTCACTGAGAGAGTCGTATCGGAACATTCATCAAGGGT 120
Query 390 ATCCGACAGAGAATTTGTTACGCTTTCTTAAAGCCAGGGATGGGAATGTCCAGAAAGCTC 449
|| ||||||||| ||||| ||||||||||||||| |||||| ||||||| ||||||||||
Sbjct 121 ATACGACAGAGACTTTGTCACGCTTTCTTAAAGCGAGGGATTGGAATGTTCAGAAAGCTC 180
Query 450 ATAAAATGTTGCTCGAGTGTTTGGAATGGAGGACTCAAAACGAGATTGACAAGATACTAA 509
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 181 ATAAAATGTTGCTCGAGTGTTTAGAATGGAGGACTCAAAACGAGATTGATAAGATACTAA 240
Query 510 CTAAACCCATTGTTCCTGTTGACCTGTACAGAGGAATCAGAGACACACAACTTGTCGGTG 569
| ||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 241 CAAAACCTATTGTTCCTGTTGACCTGTATAGAGCAATCAGAGACACACAACTTGTCGGTG 300
Query 570 TGTCTGGTTACTCTAAAGAGGGTCTCCCTGTCATTGCCATTGGTGTGGGGCTTAGCACAT 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGTCTGGTTACTCTAAAGAGGGTCTCCCTGTCATTGCCATTGGTGTGGGGCTTAGCACAT 360
Query 630 ATGATAAAGCCTCCGTTCACTACTATGTACAGTCTCACATTCAAATGAATGAGTACCGGG 689
|||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 ATGACAAGGCCTCCGTTCACTACTATATACAGTCTCACATTCAAATGAATGAGTACCGGG 420
Query 690 ATCGTGTTGTATTGCCATCTGCTTCAAAGAAACAGGGACGACCAATTTGCACTTGTTTGA 749
||||||| ||||||||||||||| | ||||||||||||||||||||||| ||||||||||
Sbjct 421 ATCGTGTAGTATTGCCATCTGCTACTAAGAAACAGGGACGACCAATTTGTACTTGTTTGA 480
Query 750 AAATTTTGGATATGTCTGGTTTAAAGCTTTCAGCTTTAAGTCAAATTAAGTTAATGACTG 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAATTTTGGATATGTCTGGTTTAAAGCTTTCAGCTTTAAGTCAAATTAAGTTAATGACTG 540
Query 810 CTATAACAACAATAGATGATTTGAACTATCCAGAGAAGACAGAGACATACTATGTTGTCA 869
||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 541 CTATAACCACAATAGATGATTTAAACTATCCAGAGAAGACGGAGACATATTATGTTGTCA 600
Query 870 ATGTCCCGTACATATTCTCTGCTTGTTGGAAAACCATAAAGCCTCTGTTGCAAGAGAGAA 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATGTCCCGTACATATTCTCTGCTTGTTGGAAAACCATAAAGCCTCTGTTGCAAGAGAGAA 660
Query 930 CAAAGAAGAAGATTCAAGTTCTGAAAGGTTGCGGGAAAGATGAGTTGCTAAAGATAATGG 989
||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 661 CAAAGAAGAAGATTCAAGTGCTCAAAGGTTGTGGGAAAGATGAGTTGCTAAAGATAATGG 720
Query 990 ACTATGAGTCTCTCCCACATTTCTGTAGAAGAGAAGGGTCTGGATCTGGTAGGCATATCT 1049
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 721 ACTATGAGTCTCTCCCACATTTCTGCAGAAGAGAAGGGTCTGGATCTGGTAGGCATAT-T 779
Query 1050 -CAAATGGAACAGTAGACAATTGTTTCTCTCTGGATCACTCTTTCCACCAAGACCTTTAT 1108
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 780 ACAAATGGAACAGTAGACAATTGTTTCTCTTTGGATCACTCTTTCCACCAAGACCTTTAC 839
Query 1109 GATTATGTCAAGCAGCAGGCTCTGGTTAAAGGATCAGGTGCACCGATCAGACATGGTTCA 1168
|||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 840 GATTATGTCAAGCAACAGGCTCTTGTTAAAGGATCAAGTGCACCGATCAGACATGGTTCA 899
Query 1169 GTCCACGTTAAGTTCCCTGAGCCAGACACCGAAGGCAACAAGATCTTCGATACCTTAGAA 1228
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 900 GTCCACGTTAAGTTCCCTGAGCCAGATACCGAAGGCAACAAGATCTTCGATACCTTAGAA 959
Query 1229 AATGAGTTCCAGAAGCTTGGAAATGACCAGAAGATCTGAGTGATCTACAAC-CCTTATAA 1287
| ||||||||||||||||||||||||||| ||||||||| | ||| || | ||||||||
Sbjct 960 ACTGAGTTCCAGAAGCTTGGAAATGACCAAAAGATCTGATT--TCTTCA-CGCCTTATAA 1016
Query 1288 CA 1289
||
Sbjct 1017 CA 1018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56944916275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5