BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55850.1
Length=2311
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337666 jgi|Araly1|337666|fgenesh1_pg.C_scaffold_1004231 3064 0.0
> Ahg337666 jgi|Araly1|337666|fgenesh1_pg.C_scaffold_1004231
Length=2184
Score = 3064 bits (1659), Expect = 0.0
Identities = 2030/2206 (92%), Gaps = 38/2206 (2%)
Strand=Plus/Plus
Query 54 ATGGTAAACAAAGACGACCGGATTAGACCGGTTCATGAAGCCGACGGTGAACCGCTTTTT 113
|||| |||| ||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGGAAACGAAGACGACCGGGTTAGACCGGTTCATGAAGGCGACGGTGAACCGCTTTTC 60
Query 114 GAGACTAGGAGAAGAACCGGTAGAGTGATTGCGTACCGGTTTTTCTCAGCCTCGGTTTTC 173
||||| ||||| |||||||| |||||||||||||||||| |||||||||| |||||||||
Sbjct 61 GAGACCAGGAGGAGAACCGGAAGAGTGATTGCGTACCGGATTTTCTCAGCTTCGGTTTTC 120
Query 174 GTGTGTATCTGTTTGATTTGGTTCTACA-GA--A---T--TGGT-GAGATTGGTGATAAC 224
| |||||| ||||||||||||||||| | || | | || ||||||||||| |||
Sbjct 121 GGGTGTATTTGTTTGATTTGGTTCTATAGGATGACCGTACCAGTAGAGATTGGTGAGAAC 180
Query 225 CGTACCGTTTTAGATCGATTAATCTGGTTTGTTATGTTTATTGTGGAGATTTGGTTCGGT 284
|| |||| ||| |||||||| || | ||| |||||||| | ||||||||||||||||||
Sbjct 181 CGGACCGGTTTGGATCGATTGATATCGTTGGTTATGTTGGTGGTGGAGATTTGGTTCGGT 240
Query 285 TTATATTGGGTAGTCACACAATCTTCCCGGTGGAATCCGGTTTGGCGATTTC-CCTTCTC 343
|| |||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||
Sbjct 241 TTCTATTGGGTAGTCACACAAGCTTCCCGGTGGAATCCGGTTTGGCG-TTTCACCTTCTC 299
Query 344 CGATAGACTCTCTCGGAGATACGGAAGCGACCTTCCGAGGCTCGACGTCTTCGTTTGCAC 403
|||||||||||| ||||||||||||| ||| ||||||| ||||||||| |||||||||||
Sbjct 300 CGATAGACTCTCCCGGAGATACGGAAACGATCTTCCGAAGCTCGACGTTTTCGTTTGCAC 359
Query 404 GGCGGATCCGGTGATTGAGCCGCCGTTGTTGGTGGTAAACACAGTCTTATCTGT-GACGG 462
||||||||||||||||||||||||||||||||| || ||||||||||||||||| | |||
Sbjct 360 GGCGGATCCGGTGATTGAGCCGCCGTTGTTGGTTGTCAACACAGTCTTATCTGTCG-CGG 418
Query 463 CTCTTGACTACCCACCGGAGAAACTCGCCGTTTATCTCTCAGATGACGGTGGTTCTGAGC 522
|||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 419 CTCTTGACTATCCAGCGGAGAAACTCGCCGTGTATCTCTCAGATGACGGTGGTTCTGAGC 478
Query 523 TGACGTTCTATGCTCTCACGGAGGCAGCTGAGTTTGCTAAAACTTGGGTTCCCTTCTGCA 582
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 479 TGACGTTCTATGCTCTCACGGAGGCGGCTGAGTTTGCTAAAACTTGGGTTCCCTTCTGCA 538
Query 583 AGAAG-TTCAACGTTGAGCCAACATCTCCCGCTGCTTACTTGTCTTCCAAGGCAAACT-G 640
|| || |||||||| |||||||||||||| || ||||||||||||||||||||||| | |
Sbjct 539 AG-AGATTCAACGTCGAGCCAACATCTCCGGCCGCTTACTTGTCTTCCAAGGCAAA-TGG 596
Query 641 TCTTGATTCTGCGGCTGAGGAGGTGGCTAAGCTGTATAGAGAAATGGCGGCGAGGATTGA 700
|||||||||| ||||||||||||||||||| |||||| ||||||||||| |||||||||
Sbjct 597 TCTTGATTCTACGGCTGAGGAGGTGGCTAAAATGTATAAAGAAATGGCGGTGAGGATTGA 656
Query 701 AACGGCGGCGAGACTGGGACGAATACCGGAGGAGGCGCGGGTGAAGTACGGTGACGGGTT 760
||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 657 AACGGCGGCGAGACTCGGACGAGTACCGGAGGAGGCGCGGTTGAAGTACGGTGACGGGTT 716
Query 761 TTCACAGTGGGATGCTGACGCTACTCGAAGAAACCATGGAACCATTCTTCAAGTTTTGGT 820
||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 717 TTCTCAGTGGGATGCTGACGCTACTCGTAGAAACCATGGAACCATTCTTCAAATTTTGGT 776
Query 821 AGATGGAAGAGAAGGGAAT-ACAATAGCAATACCAACGTTGGTGTATTTATCAAGAGAAA 879
||| |||||||||| ||| | |||||||||||||||||||||||||||||| ||||| |
Sbjct 777 AGACGGAAGAGAAGAAAATGA-AATAGCAATACCAACGTTGGTGTATTTATCGAGAGAGA 835
Query 880 AGAGACCTCAACATCATCATAACTTCAAGGCTGGAGCAATGAACGCATTGCTGAGGGTTT 939
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 836 AGAGACCTCAACATCATCATAACTTTAAGGCTGGAGCCATGAACGCATTGCTGAGGGTTT 895
Query 940 CTTCGAAAATTACTTGTGGGAAAATCATACTAAACTTGGACTGTGATATGTACGCAAACA 999
||||||| || || |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 896 CTTCGAAGATCACCGGTGGGAGAATCATACTAAACTTGGACTGTGATATGTACGCAAACA 955
Query 1000 ACTCAAAGTCAACACGCGACGCGCTCTGCATCCTCCTCGATGAGAAAGAGGGAAAAGAGA 1059
||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 956 ACTCAAAGTCAGCACGCGACGCCCTCTGCATCCTCCTTGATGAGAAAGAGGGAAAAGAGA 1015
Query 1060 TTGCTTTCGTGCAGTTTCCGCAGTGTTTTGACAATGTTACAAGAAATGATTTGTATGGAA 1119
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1016 TTGCTTTCGTGCAGTTTCCGCAGTGTTTTGACAACGTTACAAGAAATGATTTGTATGGAA 1075
Query 1120 GCATGATGCGAGTAGGAATTGATGTGGAATTTCTTGGATTGGATGGAAATGGTGGTCCGT 1179
|||||||||||| | | |||||||| ||||||||| |||||||||||||||||||||
Sbjct 1076 GCATGATGCGAGCAATAGCAGATGTGGACTTTCTTGGACTGGATGGAAATGGTGGTCCGT 1135
Query 1180 TATACATTGGAACTGGATGCTTTCACagaagagatgtgatctgtggaagaaagtatggag 1239
| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1136 TGTACATTGGAACTGGCTGCTTTCACAGAAGAGATGTGATCTGTGGAAGAAAGTACGGAG 1195
Query 1240 aggaagaagaagaagaagaatctgagagaaTTCACGAAAATTTAGAGCCTGAGATGATTA 1299
|||||||||||||| |||||||||||||| | ||||||||||||||||
Sbjct 1196 AGGAAGAAGAAGAA------TCTGAGAGAATTCA--A-------GAGCCTGAGATGATTA 1240
Query 1300 AGGCTCTCGCGAGCTGCACTTATGAGGAAAACACTCAATGGGGAAAGGAGATGGGTGTGA 1359
||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1241 AGGCTCTTGCGAGCTGCACTTATGAGGAAAACAGTCAATGGGGAAAGGAGATAGGTGTGA 1300
Query 1360 AATATGGTTGCCCGGTAGAGGATGTAATAACTGGTTTGACGATTCAGTGTCGCGGATGGA 1419
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1301 AATACGGTTGCCCGGTAGAGGATGTAATAACTGGATTGACGATTCAGTGTCGCGGATGGA 1360
Query 1420 AATCAGCCTACCTGAACCCGGAAAAGCAAGCATTTCTCGGGGTAGCGCCGACCAATTTGC 1479
||||||| ||| ||||||||| ||| |||| ||| |||||||||||||||| |||||||
Sbjct 1361 AATCAGCATACTTGAACCCGGGAAATAAAGCTTTTGTCGGGGTAGCGCCGACTAATTTGC 1420
Query 1480 ATCAAATGCTAGTGCAGCAGAGGAGATGGTCAGAGGGAGACTTTCAGATTATGCTTTC-G 1538
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1421 ATCAAATGCTTGTGCAGCAGAGGAGATGGTCAGAGGGAGACTTTCAGATTCTGCTTTCAG 1480
Query 1539 AAGTATAGTCCGGTTTGGTATGGAAAAGGAAAGATCAGTTTAGGACTGATACTTGGTTAC 1598
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1481 A-GTATAGTCCGGTTTGGTATGGAAAAGGAAAGATCGGTTTAGGACTGATACTTGGTTAC 1539
Query 1599 TGTTGCTATTGTCTTTGGGCTCCATCTTCACTACCTGTGCTCATTTACTCTGTTTTGACT 1658
||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1540 TGTTGCTATTGCCTTTGGGCTCCATCTTCAGTACCTGTGCTTATTTACTCTGTTTTGACT 1599
Query 1659 TCTCTCTGTCTCTTCAAAGGCATTCCTCTGTTTCCAAAGGTCTCGAGCTCGTGGTTTATT 1718
|||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1600 TCTCTCTGCCTCTTCAAAGGCATTCCTCTGTTTCCAAAGGTCTCGAGTTTGTGGTTTATC 1659
Query 1719 CCGTTTGGATACGTCACTGTTGCAGCTACCGCATATAGCCTAGCCGAGTTCTTGTGGTGC 1778
||||||||||| |||||||| ||||||| ||| |||||| ||||||||||||||||||||
Sbjct 1660 CCGTTTGGATATGTCACTGTCGCAGCTAACGCCTATAGCTTAGCCGAGTTCTTGTGGTGC 1719
Query 1779 GGAGGGACGTTCCGT-GGATGGTGGAACGAGCAAAGGATGTGGCTTTATAGAAGAACAAG 1837
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1720 GGAGGGACGTTCC-TAGGATGGTGGAACGAGCAAAGGATGTGGCTTTATAGAAGAACAAG 1778
Query 1838 CTCGTTTCTTTTCGGATTTATGGACACGATTAAGAAGCTACTTGGAGTTTCTGAGTCTGC 1897
||| |||||||||||||| |||||||||||||||||| |||| || ||||| ||||||||
Sbjct 1779 CTCATTTCTTTTCGGATTCATGGACACGATTAAGAAGTTACTCGGGGTTTCGGAGTCTGC 1838
Query 1898 GTTTGTGATCACAGCAAAAGTAGCAGAAGAAGAAGCAGCAGAGAGATACAAGGAAGAGGT 1957
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1839 GTTTGTGATCACAGCGAAAGTAGCAGAAGAAGAAGCAGCAGAGAGATACAAGGAAGAGGT 1898
Query 1958 AATGGAGTTTGGAGTGGAGTCTCCCATGTTTCTCGTCCTCGGAACACTCGGTATGCTCAA 2017
|||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||
Sbjct 1899 TATGGAGTTTGGAGTGGAGTCTCCCATGTTTATCCTCCTAGGAACACTCGGTATGCTCAA 1958
Query 2018 TCTCTTCTGCTTCGCCGCAGCGGTTGCGAGACTTGTTTCCGGAGACGGTGGAGATTTGAA 2077
||||||||||||||||||||||||| |||||||| || |||||||||||||||||| ||
Sbjct 1959 TCTCTTCTGCTTCGCCGCAGCGGTTATGAGACTTGCTTACGGAGACGGTGGAGATTTTAA 2018
Query 2078 AACAATGGGGATGCAATTTGTGATAACAGGAGTACTAGTTGTCATAAACTGGCCTCTGTA 2137
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2019 GGGAATGGGCTTGCAATTTGTGATAACAGGAGTACTAGTTGTCATAAACTGGCCTTTGTA 2078
Query 2138 TAAAGGTATGTTGTTGAGGCAAGACAAAGGAAAGATGCCAATGAGCGTTACAGTTAAATC 2197
| ||||||||||||||||| |||||| ||||||||||||||| ||||| |||||||||||
Sbjct 2079 TGAAGGTATGTTGTTGAGGAAAGACAGAGGAAAGATGCCAATAAGCGTGACAGTTAAATC 2138
Query 2198 AGTTGTTTTAGCTTTATCTGCCTGTACCTGTTTAGCGTTTTTGTAA 2243
||||||| |||||||||||||||| ||||||||||||||||| |||
Sbjct 2139 AGTTGTTATAGCTTTATCTGCCTGCACCTGTTTAGCGTTTTTATAA 2184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87036209825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5