BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55870.1
Length=2191
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314800 jgi|Araly1|314800|fgenesh1_pm.C_scaffold_1003580 3264 0.0
> Ahg314800 jgi|Araly1|314800|fgenesh1_pm.C_scaffold_1003580
Length=2070
Score = 3264 bits (1767), Expect = 0.0
Identities = 1972/2073 (95%), Gaps = 6/2073 (0%)
Strand=Plus/Plus
Query 59 ATGCGCCGGCACAAGCGATGGCCTTTGAGGTCTCTTGTCTGCAGCTTCAGCTCCTCTGCG 118
|||||||||||||||||||||||||||||| |||| | |||||||||||||||||| |||
Sbjct 1 ATGCGCCGGCACAAGCGATGGCCTTTGAGGCCTCTCGCCTGCAGCTTCAGCTCCTCGGCG 60
Query 119 GCGGAGACAGTTACTACTTCAACGGCAGCTTCAGCGACGGCGGCTTTTCCGTTGAAGCAT 178
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 61 GCGGAGACAGTTACTACTTCAACGGCTGCTTCGGCGACGGCGGCTTTTCCGTTGAAGCAT 120
Query 179 GTGACAAGGTCGAACTTCGAGACGACGCTGAATGATCTACGCTCACTCGTAAAGGCTGCA 238
|| || |||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 121 GTAACGAGGTCGAACTTCGAGACGACACTGAATGATCTGCGTTCACTCGTAAAGGCTGCG 180
Query 239 GATTTCGTGGCGATTGACCTTGAGATGACTGGCGTGACAAGCGCTCCGTGGCGAGACTCC 298
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 181 GATTTCGTGGCGATTGACCTTGAGATGACTGGTGTGACAAGCGCTCCGTGGCGTGACTCA 240
Query 299 TTAGAGTTCGACCGCTACGACGTCAGATACCTCAAAGTCAAAGACTCCGCCGAGAAATTC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTAGAGTTCGACCGCTACGACGTCAGATACCTCAAAGTCAAAGACTCCGCCGAGAAATTC 300
Query 359 GCCGTCGTTCAGTTTGGTGTCTGTCCCTTTCGTTGGGATTCTCGTACTCAGTCATTCGTG 418
|||||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 301 GCCGTCGTTCAGTTCGGCGTCTGTCCCTTTCGCTGGGATTCTCGAACTCAGTCATTCGT- 359
Query 419 TCCT-ACCCGCACAATTTCTTTGTATTTCCTCGTCAAGAACTCACATTTGATCCACCAGC 477
| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 360 TTCTCACCCGCACAATTTCTTTGTATTTCCTCGTCAAGAGCTCACATTTGATCCACCAGC 419
Query 478 TCATGAATTTCTCTGTCAGACTACATCAATGGATTTTCTTGCCAAGTATCAGTTTGATTT 537
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCATGAATTTCTCTGTCAGACAACATCAATGGATTTTCTTGCCAAGTATCAGTTTGATTT 479
Query 538 CAACACCTGCATACATGAAGGAATATCTTATTTGTCCAGACGAGAAGAGGAAGAGGCAAG 597
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 480 CAATACCTGCATACATGAAGGAATATCTTATTTGTCCAGACGACAAGAGGAAGAGGCAAG 539
Query 598 TAAGCGTTTGAAAATGCTACACGGCGAGGACGGAATTGATTCATCGGGTGAAACTGAAGA 657
|||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 540 TAAGCGTTTGGAAATGCTACATGGCGAGGAGGGAATTGATTCATCCGGTGAAACTGAAGA 599
Query 658 GTTAAAGTTGGTGCGATTGGCAGATGTTCTTTTCGCTGCAAGGATGGAGAAATTGCTGAA 717
|||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||
Sbjct 600 TTTAAAGTTGGTGCGATTGGCAGATACTCTTTTCGCTGTAAGGATGGAGAAAATGCTGAA 659
Query 718 TGAATGGCGGTCTGGCCTGTTACATGGTGGGAATGCGTCCTCTGAGTTTCCGAGGATTTC 777
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 660 TGAATGGCGGTCTGGCTTGTTACACGGTGGGAATGCGTCCTCTGAGTTTCCGAGGATCTC 719
Query 778 AAATGGTTCAAAC-CAGAGTATGGAAACTGTGTTTCACCATATGCGTCCTGCTCTCAGTC 836
||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 720 AAATGGTTC-GACTCAGAGTATGGAAACTGTGTTTCACCATATGCGTCCAGCTCTCAGTC 778
Query 837 TGAAGGGTTTCACTTCTCATCAGCTCAGAGTTCTTAACTCGGTTTTAAGAAAGCATTTTG 896
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 779 TGAAGGGTTTCACTTCTCATCAGCTCAGAGTTATTAACTCGGTTTTAAGAAAGCATTTTG 838
Query 897 GAGATCTTGTGTACATACATTCAAATGATAAAAG-TTCTTCTTCACGAGACATTGTTGTG 955
||||||||||||||||||||||||||||| |||| ||| | ||||| || | |||||||
Sbjct 839 GAGATCTTGTGTACATACATTCAAATGAT-AAAGATTCCTGTTCACAAGGCTTTGTTGTC 897
Query 956 TATACTGATTCAGATTCCGACAAGGAAAACCTCATGAAGGAGGCAAAGGACGAACGCAAG 1015
|||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 898 TATACTGATTCAGAATCCGACAAGGAAAATCTCATGAAGGAGGCAAAGGATGAACGCAAG 957
Query 1016 AGATTGGCAGAAAGAAAAATACAATCTGCAATCGGGTTCCGTCAAGTGATTGATCTGCTT 1075
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AGATTAGCAGAAAGAAAAATACAATCTGCAATCGGGTTCCGTCAAGTGATTGATCTGCTT 1017
Query 1076 GCTTCAGAGAAAAAGCTGATCGTTGGTCACAATTGTTTCCTCGATATTGCACATGTATAC 1135
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GCTTCAGAGAAAAAGTTGATTGTTGGTCACAATTGTTTCCTCGATATTGCACATGTATAC 1077
Query 1136 AGCAAATTTGTGGGTCCTCTTCCTTCAACAGCTGAGAAATTCGTGGCCTCCATTAACAGT 1195
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1078 AGCAAATTTGTGGGTCCTCTTCCTTCAACAGCTGAGAAATTCGTCGCCTCCATTAACAGT 1137
Query 1196 CACTTTCCTTATATTGTTGACACCAAAATACTCTTAAACGTGAATCCAATGTTGCATCAG 1255
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CACTTTCCTTACATTGTTGACACCAAAATACTCTTAAACGTGAATCCAATGTTGCATCAG 1197
Query 1256 CGGATGAAAAAGTCCAGTACATCACTGTCTTCCGCGTTTTCCTCGTTATGTCCGCAAATC 1315
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1198 CGGATGAAAAAGTCCAGTACATCACTATCTTCTGCGTTTTCCTCGTTATGTCCGCAAATC 1257
Query 1316 GAGTTTTCTTCAAGAAGCTCTGACTCGTTTCTTCAGCAGCGTGTCAATATTGACGTTGAA 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1258 GAGTTTTCTTCAAGAAGCTCTGACTCGTTTCTTCAGCAGCGTGTCAATATTGATGTTGAG 1317
Query 1376 ATAGACAACGTTAGGTGTTCTAACTGGAATGCAGGAGGAAAACACGAAGCCGGTTATGAT 1435
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1318 ATAGACAACGTTAGGTGTTCTAACTGGAATGCAGGAGGAAAGCACGAAGCTGGTTATGAT 1377
Query 1436 GCTTTCATGACAGGTTGCATCTTTGCGCAGGCATGCAATCATCTCGGTTTTGACTTCAAA 1495
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1378 GCTTTCATGACAGGTTGCATCTTTGCGCAGGCATGCAATCATCTCGGTTTCGACTTCAAA 1437
Query 1496 CAGCATTCGCAGTTAGATGACTTTGCCCAGAACGAGAAACTTGAAAAGTACATCAACCGT 1555
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 CAGCATTCGCAATTAGATAACTTTGCCCAGAACGAGAAACTTGAAAAGTACATCAACCGT 1497
Query 1556 CTTTATCTCAGCTGGACAAGAGGTGATATCATCGACCTTCGAACAGGCCATAGTAATGCA 1615
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1498 CTTTATCTCAGCTGGACAAGAGGTGATATCATCAACCTTCGAACAGGCCATAGTAATGCA 1557
Query 1616 GATAACTGGCGAGTCTCAAAGTTCAAATACGAGAACATTGTCCTCATCTGGAACTTCCCA 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 GATAACTGGCGAGTCTCAAAGTTCAAATACGAGAACATTGTCCTCATCTGGAACTTCCCA 1617
Query 1676 CGAAAACTTAAGGCGAGAGGGATCAAAGAATGCATATGCAAAGCCTTTGGCTCTGCTTCT 1735
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 CGAAAACTTAAGGCTAGAGAGATCAAAGAATGCATATGCAAAGCCTTTGGCTCTGCTTCT 1677
Query 1736 GTCACCTCTGTCTACCACGTGGACGACTCTGCGGTTTTTGTCCTGTTTAAGAACTCAGAA 1795
|||||||| |||||||| ||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1678 GTCACCTCGGTCTACCATGTGGATGACTCTGCGGTTTTTGTCTTGTTTAAGAACTCAGAA 1737
Query 1796 CTTGTCTGGGACTTCTTAGCACTCAAGCGGCAGCTGGAGTCAAGCGACGGTCCAGTCTCA 1855
|| ||||||||||||||| | ||||||||| |||||||||||| ||| |||||||| ||
Sbjct 1738 CTCGTCTGGGACTTCTTAACGCTCAAGCGGGAGCTGGAGTCAACCGATGGTCCAGTTTCG 1797
Query 1856 GTTCTTCACCCTTTATCCAAGATCCTTGAAGGAGGAAACACTGGAGCTGCAGACTACGAA 1915
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1798 GTTCTTCACCCTTTATCCAAGATCCTCGAAGGAGGAAACACTGGAGCTGCAGACTACGAA 1857
Query 1916 GCATACAAAGAGATTTGCAGCTCACACGTCTCAGAGGTCATGTTCTCTGACCAAGCTGAA 1975
|| ||||||||||||||||||||| || ||||| || || | ||||||||||||||||||
Sbjct 1858 GCTTACAAAGAGATTTGCAGCTCAAACATCTCAAAGATCCTATTCTCTGACCAAGCTGAA 1917
Query 1976 ACAGTTGGTGTCAAATCAAGAACAAGACCCAACGCACAATGCGAGACTGAGACAAGAGAG 2035
||||||||||||||||||||||||||||| || ||||| |||||||||||| |||||||
Sbjct 1918 ACAGTTGGTGTCAAATCAAGAACAAGACCGGACCCACAAGGCGAGACTGAGAGAAGAGAG 1977
Query 2036 GAGAACACAGTCACTGTGACTCACAAAGCATCGGATTTGATTGATGCGTTTTTGGCCAAT 2095
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1978 GAGAACACAGTCGCTGTGACTCACAAAGCATCGGATTTGATCGATGCGTTTTTGGCCAAT 2037
Query 2096 AGAGTTGAAGTCGAAACTGCTACGAGTAATTAA 2128
|||| ||||||||||||||||||| |||||||
Sbjct 2038 AGAGAGGAAGTCGAAACTGCTACGACTAATTAA 2070
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82465380425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5