BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55880.1
Length=1703
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924111 jgi|Araly1|924111|scaffold_105392.1 2134 0.0
> Ahg924111 jgi|Araly1|924111|scaffold_105392.1
Length=1308
Score = 2134 bits (1155), Expect = 0.0
Identities = 1261/1312 (96%), Gaps = 7/1312 (1%)
Strand=Plus/Plus
Query 21 GGAGAAGGCGAGCTTGAGCTTCAATGGCGCCTGTTAATATGACTGGCGCTGTTGTTGCAG 80
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGAGAAGACGAGCTT-AGCTTCAATGGCGCCTGTTAATATGACTGGCGCTGTTGTTGCAG 59
Query 81 CAGCGGCGTTGTTGATGCTTACTTCTTACAGCTTCTTTTTCCGTCTCTCC--G-AGAAGA 137
| ||||||||| |||||||| |||||||||| | || |||||||||||| | ||||||
Sbjct 60 CGGCGGCGTTGCTGATGCTTTCTTCTTACAG--T-TTCTTCCGTCTCTCCGAGAAGAAGA 116
Query 138 AGAAGAGGAAGGAGAAGTTGACTATGAGAAACGGGCTTGTTGATGCCATTGGCAATACTC 197
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 117 AGAAGAGGAAGGACAAGTTGAGTATGAGAAACGGGCTTGTTGATGCCATTGGCAATACTC 176
Query 198 CTCTGATTCGTATCAATAGTCTCTCTGAGGCTACTGGATGTGAGATTCTTGGGAAATGCG 257
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CTCTGATTCGTATCATTAGCCTCTCTGAGGCTACTGGATGTGAGATTCTTGGGAAATGCG 236
Query 258 AGTTTTTGAATCCAGGAGGTAGTGTTAAAGATAGAGTTGCTGTCAAGATCATTCAAGAGG 317
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 237 AGTTTTTGAATCCAGGAGGTAGTGTTAAAGATAGAGTTGCTGTGAAGATCATTCAAGAGG 296
Query 318 CTTTGGAATCTGGTAAGCTATTCCCTGGAGGAATTGTAACTGAGGGTAGTGCAGGAAGTA 377
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 297 CTTTGGAATCTGGTAAGCTATTCCCGGGAGGAATTGTAACTGAGGGTAGTGCAGGAAGTA 356
Query 378 CTGCCATTAGCCTTGCTACAGTTGCTCCGGCTTATGGGTGTAAATGTCATGTTGTTATAC 437
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 357 CTGCCATTAGCCTTGCTACAGTTGCTCCGGCGTACGGGTGTAAATGTCATGTTGTTATAC 416
Query 438 CTGATGATGCTGCTATTGAAAAGTCTCAAATAATTGAAGCCCTTGGAGCTTCTGTTGAGA 497
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 417 CTGATGATGCTGCTATTGAAAAGTCTCAAATAATTGAAGCCCTTGGAGCTACTGTTGAGA 476
Query 498 GAGTGAGGCCAGTGTCAATAACTCACAAGGATCACTATGTCAACATTGCGAGGCGACGGG 557
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 477 GAGTGAGGCCAGTGTCAATAACTCACAAAGATCATTATGTCAACATTGCGAGGCGACGTG 536
Query 558 CTGACGAAGCAAACGAGTTAGCATCAAAGAGAAGACTAGGGAGCGAAACAAATGGCATAC 617
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 537 CTGATGAAGCAAACGAGTTAGCATCAAAGAGAAGACTAGGGAGCAAAACAAATGGCATAC 596
Query 618 ACCAGGAGAAAACTAATGGTTGCACGGTTGAGGAAGTGAAAGAGCCTTCCTTATTCTCAG 677
||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||
Sbjct 597 ACCAGGAGAAAACTAATGGCTGCACGGTTGAGGAAGAGAAAGAGTCTTCCTTATTCTCAG 656
Query 678 ATTCAGTTACCGGTGGCTTCTTTGCAGATCAATTTGAAAACTTGGCAAATTATAGGGCTC 737
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ATTCAGTTACAGGTGGCTTCTTTGCAGATCAATTTGAAAACTTGGCAAATTATAGGGCTC 716
Query 738 ATTATGAAGGTACTGGCCCTGAAATCTGGCACCAGACTCAGGGTAATATTGACGCCTTTG 797
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 717 ATTATGAAGGTACTGGCCCTGAAATCTGGCACCAGACTCAGGGTAACATTGACGCCTTTG 776
Query 798 TTGCTGCTGCGGGTACAGGCGGGACTTTAGCTGGTGTTTCAAGGTTTCTTCAGGATAAGA 857
||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 777 TTGCTGCTGCGGGGACAGGCGGTACTTTAGCTGGCGTTTCAAGGTTTCTTCAGGACAAGA 836
Query 858 ATGAAAGAGTTAAATGTTTTCTGATTGATCCTCCTGGATCTGGTCTGTACAATAAAGTAA 917
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 ATGAAAGAGTTAAATGCTTTCTGATTGATCCTCCTGGATCTGGTCTGTACAATAAAGTAA 896
Query 918 CACGGGGAGTGATGTACACAAGAGAAGAAGCTGAAGGGCGTCGGCTAAAGAACCCATTTG 977
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 897 CACGGGGAGTGATGTATACAAGAGAAGAAGCTGAAGGGCGTCGACTAAAGAACCCATTTG 956
Query 978 ATACAATAACAGAAGGGATCGGAATCAACAGGCTTACTAAAAACTTCCTGATGGCAAAAC 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 ATACAATAACAGAAGGGATCGGAATCAACAGGCTTACTAAAAACTTCCTGATGGCAAAAC 1016
Query 1038 TTGACGGTGGTTTTCGTGGGACTGATAAAGAAGCGGTTGAGATGTCGAGGTTTCTTCTGA 1097
|||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1017 TTGATGGTGGTTTTCGTGGCACTGACAAAGAAGCGGTTGAGATGTCGAGGTTTCTTCTGA 1076
Query 1098 AGAATGATGGGCTCTTTGTTGGAAGCTCCTCGGCTATGAACTGTGTTGGGGCAGTAAGGG 1157
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1077 AAAATGATGGGCTCTTTGTTGGAAGCTCCTCGGCTATGAACTGTGTTGGGGCAGTGAGGG 1136
Query 1158 TGGCTCAGACCCTTGGTCCTGGTCACACAATTGTCACCATTCTTTGTGATAGCGGAATGA 1217
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TGGCTCAAACCCTTGGTCCTGGTCACACAATTGTCACCATTCTTTGTGATAGCGGAATGC 1196
Query 1218 GACATCTAAGCAAGTTTCACGACCCTAAGTACTTGAATTTATACGGGTTAAGTCCAACCG 1277
|||||||||| |||||||||||||||||||||||| || |||||||||| ||||||||||
Sbjct 1197 GACATCTAAGTAAGTTTCACGACCCTAAGTACTTGGATCTATACGGGTTGAGTCCAACCG 1256
Query 1278 CTATCGGATTAGAGTTCCTCGGCATAAAGTGAAACTACAAATCTGTTACAAT 1329
|||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1257 CTATCGGATTAGAGTTCCTCGGCATAAAGTGAAACTACCTATCTGTTACAAT 1308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63877340865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5