BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55890.1
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474658 jgi|Araly1|474658|fgenesh2_kg.1__4612__AT1G55890.1 1797 0.0
> Ahg474658 jgi|Araly1|474658|fgenesh2_kg.1__4612__AT1G55890.1
Length=1261
Score = 1797 bits (973), Expect = 0.0
Identities = 1157/1244 (93%), Gaps = 19/1244 (2%)
Strand=Plus/Plus
Query 1 GCTCTCACTCCCAAAACGATGTCGTCTCTATCTCGCGTTCTCCGTGGCACCTTCAACACT 60
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 GCTCTCAGTCCCAAAACGATGTCGTCTCTATCTCGCGTTCTCCGTGGCACCTTCAACA-T 59
Query 61 TGCC-CGATCCGCCGTTTTTCCTCCGCCGCCACCGTAGTCTCCGAACCCACCGCAGTCAC 119
| || ||||||||||||||||||||||||||||| | | || | || |||||||
Sbjct 60 TTCCACGATCCGCCGTTTTTCCTCCGCCGCCACC--A---T---AA-CGACGGCAGTCAG 110
Query 120 TGCCGCAATCTCGCCTCCTCAAAAGTCACTAACCAGTCTCGTGAATGGCGAACGAAACCC 179
||||||||||||||| |||||||| ||||| |||||| |||| |||||||||||||||||
Sbjct 111 TGCCGCAATCTCGCCACCTCAAAATTCACTTACCAGTATCGTAAATGGCGAACGAAACCC 170
Query 180 -CAAACGGATCGTGGAGAAATTCAAGAAGGCATGTGAGTCGGAGCGGTTCCGGACCAACA 238
|||| ||||||| ||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 171 ACAAA-GGATCGTTGAGAAGTTCAAGAAGGCATGTGAGTCGGAGCGGTTCCGGAATAACA 229
Query 239 TAGCCGTGTACGATAGAACCGTGCGCCGTCTCGTAGCCGCAAAGAGATTACACTATGTCG 298
||||||| |||||||||||||||||||||||||| || |||||||||||||||| |||||
Sbjct 230 TAGCCGTTTACGATAGAACCGTGCGCCGTCTCGTCGCAGCAAAGAGATTACACTTTGTCG 289
Query 299 AAGAGATTTTGGAGGAGCAGAAGAAGTACCGCGACATGTCAAAAGAGGGATTCGCGGCGA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 AAGAGATTTTGGAGGAGCAGAAGAAGTACCGCGACATGTCAAAAGAGGGATTCGCGGCGA 349
Query 359 GGATCATTTCTCTGTATGGAAAAGCCGGCATGTTTGAAAATGCACAGAAGGTGTTCGAAG 418
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 350 GGATCATTTCTCTGTATGGAAAAGCCGGCATGTTTGAAAATGCCCAGAAGGTGTTCGACG 409
Query 419 AAATGCCAAACAGAGACTGCAAGAGGTCAGTGTTGTCCTTCAATGCCTTGCTTAGTGCAT 478
||||||| | ||| ||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 410 AAATGCCTGATAGAAACTGCAAAAGGTCAGTCTTGTCCTTCAATGCCTTGCTTAGTGCAT 469
Query 479 ATAGACTTTCCAAGAAATTCGATGTGGTTGAAG-AACTTTTCAATGAGTTACCTGGAAAG 537
|| | |||||||||||||||||||||||||| | ||||||||||||||||||| || |||
Sbjct 470 ATGGGCTTTCCAAGAAATTCGATGTGGTTGA-GCAACTTTTCAATGAGTTACCGGGGAAG 528
Query 538 TTATCAATCAAACCAGATATTGTATCTTACAATACTTTGATTAAGGCATTGTGTGAGAAG 597
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 529 TTATCAATCAAACCAGATATTGTATCTTACAATACTTTGATCAAGGCATTGTGTGAGAAG 588
Query 598 GATTCTTTACCTGAAGCTGTTGCATTGCTTGATGAGATTGAGAACAAGGGACTAAAACCT 657
|||||||||||||||||||||||||| |||||||||||||||||||| || | ||||||
Sbjct 589 GATTCTTTACCTGAAGCTGTTGCATTACTTGATGAGATTGAGAACAAAGGTTTGAAACCT 648
Query 658 GATATAGTTACATTCAACACACTTTTACTGTCTTCGTATCTAAAGGGACAGTTTGAGCTA 717
|||||||| ||||||||||||||||||||||| |||||| | ||||||||||||||||||
Sbjct 649 GATATAGTCACATTCAACACACTTTTACTGTCGTCGTATTTGAAGGGACAGTTTGAGCTA 708
Query 718 GGGGAAGAGATATGGGCTAAAATGGTGGAGAAGAATGTAGCAATAGACATCAGGACTTAC 777
||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct 709 GGGGAAGAGATATGGGCTAAATTGGTGGAGAAGAATGTACCGATAGACATCAGGACTTAT 768
Query 778 AATGCTAGGCTGCTTGGATTAGCCAATGAGGCGAAATCGAAAGAGCTAGTAAATCTCTTT 837
|||||| || ||||||||||||||| |||| |||||| |||||||| |||| |||||||
Sbjct 769 AATGCTCGGTTGCTTGGATTAGCCAGCGAGGTGAAATCAAAAGAGCTGGTAAGTCTCTTT 828
Query 838 GGAGAACTTAAGGCTAGTGGGCTCAAACCTGATGTTTTCAGTTTCAATGCTATGATTAGA 897
| |||||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 829 GAAGAACTGAAAGCTAGTGGGATCAAACCTGATGTTTTCAGCTTCAATGCTATGATTAGA 888
Query 898 GGATCTATCAACGAAGGAAAAATGGACGAAGCTGAAGCGTGGTACAAAGAAATTGTGAAG 957
|||||||||||| | ||||||||||||||||||||| | |||||||||||||| ||||||
Sbjct 889 GGATCTATCAACCATGGAAAAATGGACGAAGCTGAATCATGGTACAAAGAAATAGTGAAG 948
Query 958 CATGGTTATCGTCCTGATAAAGCTACCTTTGCTTTATTGCTTCCTGCTATGTGTAAAGCA 1017
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 949 CACGGTTATCGTCCTGATAAAGCTACCTTTGCTTTATTGCTTCCTGCAATGTGTAAAGCA 1008
Query 1018 GGTGACTTTGAGTCTGCGATTGAGCTCTTCAAGGAGACATTCAGTAAGCGGTATCTTGTC 1077
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 GGTGACTTTGAGTCTGCGATTGAGCTCTTCAAGGAGACATTCAGTAAGCGGTATCTTGTG 1068
Query 1078 GGTCAAACAACGTTGCAGCAGTTAGTTGATGAATTGGTGAAAGGGTCTAAGAGAGAAGAA 1137
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1069 GGTCAAACAACGTTGCAGCAGTTAGTTGATGAATTGGTGAAAGGGTCCAAGAGAGAAGAA 1128
Query 1138 GCTGAGGAGATTGTGAAGATTGCAAAGACCAATGATTTCTTAAAGTTGAAGCTAAATTTG 1197
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1129 GCTGAGGAGATTGTGGAGATTGCAAAGACCAATGATTTCTTAAAGTTGAAGCTAATTTTG 1188
Query 1198 CCGTCCCAGGAAGAGTAAGT----CATTTGCTACTCTCTCACTA 1237
|||||||||||||||||||| ||||||||||||||||||||
Sbjct 1189 CCGTCCCAGGAAGAGTAAGTGGTTCATTTGCTACTCTCTCACTA 1232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54430960105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5