BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55900.1
Length=1534
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474659 jgi|Araly1|474659|fgenesh2_kg.1__4613__AT1G55900.1 2198 0.0
> Ahg474659 jgi|Araly1|474659|fgenesh2_kg.1__4613__AT1G55900.1
Length=1459
Score = 2198 bits (1190), Expect = 0.0
Identities = 1351/1428 (95%), Gaps = 13/1428 (1%)
Strand=Plus/Plus
Query 76 AGAAAACGCCGAAATCGGAAATGGCGTCTATTGTTCTTCGATCTCGCCTGTTGCCAAGAT 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 38 AGAAAACGCCGAAATCGGAAATGGCGTCTATTGTTCTTCGATCTCGCCTGTTGCCAAGAT 97
Query 136 TAGCAAAGCTCAGATCTCGTAATCTGAGATGTTTCTCTGCGGAAGCATCTTCGACGAATT 195
|| |||| |||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 98 TAACAAACCTCAGATCTCGTAATCTGAGATGTTTCTCTGCGGAAGCATCTTCTTCCAATT 157
Query 196 CTACATCTAGGTATTCGGGAGTCACCTCTACCCAGTCGATGTTTTCTGATTTTCCACCGC 255
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 CTTCATCTAGGTATCCGGGAGTCACCTCTACCCAGTCGATGTTTTCTGATTTTCCACCGC 217
Query 256 CAAATCAGCCGCCACCTCCTCCTCCTCCTCAAGTGGAAGCTGCTGCCGCGGCTGCGACGG 315
|||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 218 CAAATCAGCCGCCACCTCCTCCTCCTCCTCCGGTGGAAGCTGCGGCCGCGGCAGCGACGG 277
Query 316 GAAAGGAGAGGAAAGGTCTTAAGTATCTTGGTTACGCACTCCTCTGGGCACTCACTGGTG 375
| |||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 278 GGAAGGAGCGAAAAGGTCTTAAGTATCTTGGTTACACACTCCTCTGGGCACTCACTGGTG 337
Query 376 CTACCGCTGCTACTGGTTACGCAAGTTTTGCTTACACGATAGATGAAGTGAATGAAAAGA 435
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 338 CTACCGCTGCTACTGGTTACGCAAGTTATGCTTACACGATAGATGAAGTGAATGAAAAGA 397
Query 436 CTAAGGCGTTCCGAGAATCAGCTACGAAGACACCAGTTATTAAATCTTCTGGCATTGATG 495
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 398 CTAAGGCGTTCCGAGAATCAGCTAAGAAGACACCAGTTATTAAGTCTTCTGGCATTGATG 457
Query 496 TGATTGATAAATATCAGACTAAGTTGTACTCTGCTGCAATGACAGGTTCTGCTAGAGCCA 555
|||||||||||||||| ||||||||||| |||||||| ||||||||||||||| |||||
Sbjct 458 TGATTGATAAATATCAAACTAAGTTGTATTCTGCTGCGTTGACAGGTTCTGCTAAAGCCA 517
Query 556 TTGATAAGTATTTAGAGCTTAGGGAAATTGTGGAGGAACAAGTGAAAGGCTTCACGGAAC 615
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 TTGATAAGTATTTGGAGCTTAGGGAAATTGTGGAGGAACAAGTGAAAGGCTTCACGGAAC 577
Query 616 CTCTCTCGGAAAAGCTTCTTCCGGATCTGCACCCCGCAGAACAGCATGTCTTCACTCTAG 675
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 578 CTCTTTCGGAAAAGCTTCTTCCGGATCTGCACCCCTCAGAACAGCATGTCTTCACTCTAG 637
Query 676 TTCTTGATTTAAATGAGACACTGCTTTACACTGACTGGAAGCGGGAAAGAGGGTGGAGGA 735
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 638 TTCTTGATTTGAATGAGACACTGCTTTACACTGACTGGAAGCGAGAAAGAGGGTGGAGGA 697
Query 736 CATTCAAAAGACCAGGTGTCGATGCATTCTTGGAGCATCTTGGGAAATTCTATGAGATTG 795
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 698 CATTCAAAAGACCAGGTGTCGATGCGTTCTTGGAGCATCTTGGCAAATTCTATGAGATTG 757
Query 796 TCGTGTATTCTGACCAGATGGAGATGTATGTACTCCCGGTCTGTGAGAAATTAGACCCAA 855
|||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||
Sbjct 758 TCGTGTATTCTGACCAGATGGATATGTACGTACTTCCGGTCTGCGAGAAATTAGACCCAA 817
Query 856 ATGGCTACATACGTTATAAGCTAGCAAGAGGCGCTACTAAATATGAAAATGGAAAGCACT 915
|| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 818 ATAACTACATACGTTATAGGCTAGGAAGAGGCGCTACTAAATATGAAAATGGAAAGCACT 877
Query 916 ATAGGGATCTGTCAAAGCTGAACAGAGATCCGAAG-AAGATTCTGTTTGTTAGCGCAAAT 974
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 878 ATAGGGATCTGTCAAAGCTGAACAGAGATCC-AAGGAAGATTCTGTTTGTTAGCGCAAAC 936
Query 975 GCCTTTGAATCAACCCTTCAGCCAGAAAATAGCGTGCCAATCAAGCCTTACAAACTAGAA 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 GCCTTTGAATCAACCCTTCAGCCAGAAAATAGCGTGCCAATCAAGCCTTACAAACTAGAA 996
Query 1035 GCTGATGACACAGCCCTAGTTGACCTGATACCCTTCCTTGAATATGTTGCACGTAACAGT 1094
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 GCTGATGACACGGCTCTAGTTGACCTGATACCCTTCCTTGAATATGTTGCACGTAACAGT 1056
Query 1095 CCAGCAGACATCAGACCGGTTCTGGCCTCTTTTGAGAGAAAAGATATTGCCAAAGAGTTC 1154
||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1057 CCAGCGGACATCAGACCGGTTCTGGCCTCTTTCGAGAGAAAAGATGTTGCCAAAGAGTTC 1116
Query 1155 ATTGACAGGTCCATAGAGTATCAAAAGCGAAAGCAAGGACAACTGGGACAAGGTCGATTC 1214
|||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||
Sbjct 1117 ATTGACAGGTCCATAGAGTATCAAAAGCGAAAGCAACAACAACAGGGACAAGGCCGATTC 1176
Query 1215 TGGAGGCGTTAAAGGATCTAAGATTTATGTATAGAGCGAGAGACAATTATATCATCATTG 1274
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1177 TGGAGGCGTTAAAGGATCTAATATTTATGTATAG--CGAGAGACAATTATATCATCATTG 1234
Query 1275 ATGGTGCACACCATAAAATAGGAACATGAGCTACCGTTCTTCGCTATGGATTTATTAGGT 1334
||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1235 ATGCTGCACACCATAAATTAGGAACATGAGCTACCGTTCTTCGCTATGGATTT-TTAGGT 1293
Query 1335 AAAATCCGAATTAAAATACTGTCTTTGTCATCAAAGAGTTTTTATGTT-ACCCAATTTTC 1393
||||| |||||||||| ||||||| || |||||||||| ||||||| |||||||||||
Sbjct 1294 AAAATTTGAATTAAAATGGTGTCTTTCTCGTCAAAGAGTTGTTATGTTTACCCAATTTTC 1353
Query 1394 CTCGT-CT-TTCTCTCTGCTTTACATAGAAAATTT--CTATGAGAACGAAAAAGAAAT-T 1448
|| || || ||||||||||| |||||||||||||| |||||||||| ||||||||| |
Sbjct 1354 CT-GTTCTCTTCTCTCTGCTATACATAGAAAATTTTTCTATGAGAACTAAAAAGAAAAAT 1412
Query 1449 ATCATATGGAAGGTTCATTTTTCGTTGACTAACAAATACCGttttttt 1496
|||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 1413 ATCATATGGAAGGTTCATTTTTCGCTGTCTAACAAATACA-TTTTTTT 1459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57440089460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5