BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55910.1
Length=1196
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914721 jgi|Araly1|914721|Al_scaffold_0001_4975 1548 0.0
> Ahg914721 jgi|Araly1|914721|Al_scaffold_0001_4975
Length=984
Score = 1548 bits (838), Expect = 0.0
Identities = 936/984 (95%), Gaps = 3/984 (0%)
Strand=Plus/Plus
Query 28 Atgtctcgttctcttg---tcttcttcttcctctttcttgtcttggtcgtcccttgtctc 84
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTCGTCCTCTTGTCTTCTTCTTCTTCCTCTTTCTTGTCTTGGTCGTCCCTTGTCTC 60
Query 85 tcCCATGGAACCGGAGGAGACCACGACGACGATGAGGCTTCGCACGTTAAGAGTTCCGAT 144
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 TCCCATGGAACCGGAGGAGACCACGACGACGATGAGGCTCCGCACGTTAAGAGTTCCGAT 120
Query 145 CTCAAATCCAAATCCTTAATCTCCGTCAAGATCGCATGTCTTGTCATCATCTTTGTCCTC 204
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCAAATCTAAATCCTTAATCTCTGTCAAGATCGCATGTCTTGTCATCATCTTTGTCCTC 180
Query 205 ACGTTCATAAGCGGTGTATCTCCTTATTTCTTGAAATGGAGCCAAGGGTTTTTGGTTCTT 264
||||| || ||||| || ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 181 ACGTTTATCAGCGGCGTCTCTCCTTATTTCTTGAAATGGAGTCAAGGGTTGTTGGTTCTT 240
Query 265 GGTACACAATTCGCCGGAGGCGTGTTTCTTGCAACCGCCTTGATGCATTTCTTGTCGGAC 324
|| |||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 241 GGAACACAATTCGCCGGTGGAGTGTTTCTTGCAACCGCCTTGATGCATTTCTTGTCTGAT 300
Query 325 GCTGATGAGACGTTTCGTGGTTTGTTGACGGCGGAAGGAGAGTCGGAGCCATCTCCGGCT 384
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 301 GCTGATGAGACGTTTCGTGATTTGTTGACGGCGGAAGGAGAGTCAGAGCCATCTCCGGCT 360
Query 385 TACCCATTTGCTTATATGTTGGCTTGTGCTGGTTTTATGTTGACCATGCTTGCTGATTCT 444
|||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 361 TACCCATTTGCTTACATGTTGGCTTGTGCTGGTTTTATGATAACCATGCTTGCTGATTCT 420
Query 445 GTCATCGCTCATATCTACTCAAAGACCCAAAACGATTTGGAGCTTCAAGGAGAAGACAAA 504
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTCATCACTCATATCTACTCAAAGACCCAAAACGATTTGGAGCTTCAAGGAGAAGACAAA 480
Query 505 TCGAATCAGAGGTCAGCAACAACTGAAACTTCGATTGGAGATAGCATTCTATTGATCGTA 564
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 TCGAATCAGACGTCAGCAACAACTGAAACATCGATTGGAGATAGCATTCTATTGATCGTA 540
Query 565 GCTCTCTGTTTTCACTCTGTCTTCGAAGGCATAGCTATTGGTATTTCAGAGACTAAATCA 624
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 GCTCTCTGTTTTCACTCTGTCTTCGAAGGCATAGCTATTGGTATCTCAGAGACTAAATCA 600
Query 625 GATGCTTGGAGAGCTCTCTGGACAATAACACTCCATAAGATATTTGCAGCGATTGCAATG 684
|||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 601 GATGCTTGGAGAACTCTATGGACAATAACACTCCACAAGATATTTGCAGCGATTGCAATG 660
Query 685 GGGATAGCTCTTCTCCGTATGATCCCTGACCGTCCTTTATTCTCCTCAATCACTTATTCT 744
|| || |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 661 GGAATTGCTCTTCTCCGTATGATCCCTGACCGTCCTTTGTTCTCATCAATCACTTATTCT 720
Query 745 TTCGCATTCGCCATCTCGAGCCCAATTGGTGTTGCCATCGGGATAGTCATCGATGCAACG 804
|||||||||||||||||||||||||| |||||||| || || ||||| ||||||||||||
Sbjct 721 TTCGCATTCGCCATCTCGAGCCCAATCGGTGTTGCTATTGGAATAGTAATCGATGCAACG 780
Query 805 ACTCAAGGGTCCATCGCGGATTGGATATTCGCATTGTCGATGAGCTTGGCGTGTGGGGTA 864
|||||||| || ||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 781 ACTCAAGGATCGGTCGCGGATTGGATTTTCGCAGTGTCGATGAGCTTGGCGTGTGGGGTA 840
Query 865 TTTGTGTATGTATCTGTGAACCATTTGTTGGCAAAAGGGTATCGACCAAACAAGAAAGTT 924
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 841 TTTGTGTATGTCTCGGTGAACCATTTGTTGGCAAAAGGGTATCGACCAAACAAGAAGGTT 900
Query 925 CATGTTGATGAGCCTCGTTATAAGTTTTTGGCTGTGTTGTTTGGAGTTGTTGTCATTGCC 984
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CATGTGGATGAGCCTCGTTATAAGTTTTTGGCTGTGTTGTTTGGAGTTGTTGTCATTGCC 960
Query 985 ATTGTTATGATATGGGACACTTGA 1008
||||||||||||||||||||||||
Sbjct 961 ATTGTTATGATATGGGACACTTGA 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44641935807
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5