BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55915.1
Length=1540
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474661 jgi|Araly1|474661|fgenesh2_kg.1__4615__AT1G55915.1 2021 0.0
> Ahg474661 jgi|Araly1|474661|fgenesh2_kg.1__4615__AT1G55915.1
Length=1314
Score = 2021 bits (1094), Expect = 0.0
Identities = 1250/1325 (94%), Gaps = 12/1325 (1%)
Strand=Plus/Plus
Query 11 TTTCAAAATCCCTTTTTTGTTGCATCGAAGATCGGGAAGGTCAGAATTGTTTGGGTTTTT 70
|||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1 TTTCAAAATCCCATTTTTGTTGCATCGAAGATCGGGAAGGTCAGAAATGTTTGTGTTTTT 60
Query 71 GAATCGAATTTTGAGATATTTGAAGGTGGGCATCTGTGAAATTGTGATGAGTTCGGCGAA 130
|||||||| |||||||| ||||||||||||||||||||||| | || ||| | |||
Sbjct 61 GAATCGAA-TTTGAGATTTTTGAAGGTGGGCATCTGTGAAA-T-TG-TGA--T----GAA 110
Query 131 TTTGGAAGATTTGAACAAGGTCTGGGAAATAAAGGCTTTGAAGAGGAAACCTAGAGAAGA 190
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 111 TTTGGGAGATTTGAACAAGGTCTGGGAAATAAAGGCTTTGAAGAAGAAACCTAGAGAAGA 170
Query 191 TGAAGCGAGGAAGATTCTGGAGAAAGTAGCTAATCAGGTTCAGCCGATTATGACTAGACG 250
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 171 TGAAGCGAGGAAGATTCTGGAGAAGGTAGCTAATCAGGTTCAGCCGATTATGACTAGACG 230
Query 251 AAAATGGCGCGTCAAGCTTCTCTCTGAATTCTGCCCAACAAATCCAAGGCTTTTGGGGGT 310
||||||||| |||||||||||||||||||||||||||| |||||||| |||||| |||||
Sbjct 231 AAAATGGCGTGTCAAGCTTCTCTCTGAATTCTGCCCAAAAAATCCAATGCTTTTAGGGGT 290
Query 311 GAATGTAAATAGAGGCGTGCAAGTGAAATTGAGGCTTAGGAGGGTAAACCATGATTTAGA 370
||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||
Sbjct 291 GAATGTAAATAGAGGCGTGCAAGTGAAATTGAGGCTTCGAAGGGTAAACCATGATGGAGA 350
Query 371 TTTCTTATCGTATCATGAAATTCTCGACACCATGCTCCACGAGCTTTGCCACAACGCTCA 430
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 351 ATTCTTATCGTATCATGAAATTCTCGACACCATGCTCCACGAGCTTTGCCACAATGCGCA 410
Query 431 TGGTCCTCATAACGCAAGTTTCTATAAGCTTTGGGATGAACTTCGAAAGGAATGCGAGGA 490
||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TGGTCCTCACAATGCAAATTTCTATAAGCTTTGGGATGAACTTCGAAAGGAATGCGAGGA 470
Query 491 GTTGATGTCAAAGGGTATTACAGGGACGGGACAGGGATTTGATATGCCTGGTAAGCGTTT 550
|||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||
Sbjct 471 GTTGATGTCAAAGGGTATAACAGGGACAGGACAGGGATTTGATATTCCTGGGCAGCGTTT 530
Query 551 GGGTGGACTTTCTCGTCAGCCTTCTCTATCATTTCTCAGAGCAACTGCAGCTACAGCAGC 610
|||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||
Sbjct 531 GGGTGGACTTTCTCGTCAGCCTCCTCTATCATCTCTCCGAGCAACTGCAGCTACAGCAGC 590
Query 611 AGAAAAAAGAGTGCGTGCGGGAACTCTTTTACCTTCAGGACCTCAACGTCTTGGTGGTGA 670
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 591 AGAAAAAAGAGTGCGTGCGGGAACTCTTTTACCTTCAGGACCTCATCGTCTTGGTGGTGA 650
Query 671 TAGCAGCATTATGTCAGATCTTAGTCCAATTCAGGCTGCTGCAATGGCTGCAGAAAGGCG 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TAGCAGCATTATGTCAGATCTTAGTCCAATTCAGGCTGCTGCAATGGCTGCAGAAAGGCG 710
Query 731 TTTACTTGATGATATTTGGTGTGGTTCCCAATCCACAGATGCTTTAGAAGATGAAGAGAA 790
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 711 TTTACTTGATGATATTTGGTGTGGTTCCCAATCCACAGAGGCTTTAGAAGACGAAGAGAG 770
Query 791 TGATAGTGACACATATAAGGAACCTGTTTCCATCAGGGAAACTTGTACGAGCGTGAATGG 850
|||||||||||||| ||||||||| |||||||||||||||||||||| |||| ||||||
Sbjct 771 TGATAGTGACACATGTAAGGAACCCGTTTCCATCAGGGAAACTTGTATGAGCATGAATGC 830
Query 851 AAAGTCAGTAAAACGATGTAATAGCTGGTCCAATGCCCATTCTTGTCCTCCATCTTCCAG 910
||||| |||||| |||||||||||| |||||||||| ||||||| ||||||||||||||
Sbjct 831 TAAGTCTGTAAAAAGATGTAATAGCTTGTCCAATGCCAATTCTTGCCCTCCATCTTCCAG 890
Query 911 TCATCAACAGGGATCAGATGTCATTGATTTGACTGAAGAATCTTTTGAAATAAGATGTAC 970
|| |||| ||||||||| ||||||||||||||||| |||||||||||| ||||||| |
Sbjct 891 TCTTCAAGGGGGATCAGACGTCATTGATTTGACTGAGGAATCTTTTGAACCAAGATGTGC 950
Query 971 TAAAAGAAATC-GCAGCCCAGGTGATCAGGGTCCTTCTTGTGCCAAAGATGTACCGAACG 1029
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 TAAAAGAAA-CTGCAGCCCAGGTGATCAGGGTCCTTCTTGTGCCAAAGATGTACCGAACT 1009
Query 1030 CTGGTGTCATGAAGTCATCGATTCCTTTGCCATCGACGAGTTACAATGCAAACCAAAGCA 1089
||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1010 CTGGTTTCACGAAGTCATCGATTACTTTGCCATCGACGAGTTACAATGCAAACCAAAGCA 1069
Query 1090 GAGAAGAATCCACAATGTGGGAGTGTGCAGAATGCACCTTATTGAACCCGTCATTGGCTC 1149
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1070 GAGAAGAATCCACAATGTGGGAGTGTGCAGAATGCACCTTATTGAACCCCTCATTGGCTC 1129
Query 1150 CAATATGTGAGCTATGCACTGCCGCAAAGCCAAAGGAAAGGGAGATGAAGCACAAAGTCT 1209
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1130 CAATATGTGAGCTATGCACTGCCACAAAGCCAAAGGAAAAGGAGATGAAGCACAAAGTCT 1189
Query 1210 GGTCTTGCAAATTCTGCACGCTTGAAAATGAGGTGAAGTTAGAGAAATGTGAGGCTTGTG 1269
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1190 GGTCTTGCAAATTCTGCACGCTTGAAAACGAGGTGAAGTTAGAGAAATGTGAGGCGTGTG 1249
Query 1270 GTCAGTGGAGGTACTCGTATGGAGCACCATTGTCAACTGGTGCTCCTAATGTCGGCACTT 1329
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1250 GTCAGTGGAGATACTCGTATGGAGCACCATTGTCGACTGGTGCTCCTAATGTCGGCACTT 1309
Query 1330 GAGGG 1334
|||||
Sbjct 1310 GAGGG 1314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57668630930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5