BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55920.1
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474662 jgi|Araly1|474662|fgenesh2_kg.1__4616__AT1G55920.1 1677 0.0
> Ahg474662 jgi|Araly1|474662|fgenesh2_kg.1__4616__AT1G55920.1
Length=1161
Score = 1677 bits (908), Expect = 0.0
Identities = 1076/1152 (93%), Gaps = 31/1152 (3%)
Strand=Plus/Plus
Query 107 TAAACTGTAATTACTTTTTGAGAttttttt-GGGTCAGAGTCAAAGGTCGCCGCCATCTC 165
|||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 34 TAAAATGTAATTAC--TTTGAGATTTTTTTGGGGTCAGAGTCAAAGGTCGCCGCCATCTC 91
Query 166 TCTCTGTGTATAT-AAGCTATGttcatcttcttcactcaacaaccattctctcttctctt 224
||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 92 TCTCTTTGTATATAAAGCTATGTTCATCTTCTTCACTCAACAATCATTCTCTCTTCTCTT 151
Query 225 -ctttatctcaaactctttcttcttcCAAATCATAAACCATGGCAACATGCATAGACACA 283
||||| |||||| || | | ||||||||||||||||||| ||| ||
Sbjct 152 CCTTTA-CTCAAA----------TT-C----C--AAACCATGGCAACATGCATCGACGCA 193
Query 284 TGCCGAACCGGTAA-TACCCAAGACGATGATTCCCGGTTCTGTTGCATCAAGAATTTCTT 342
||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 194 TGCCGAACCGG-AACTACCCAAGACGATGATTCCCGGTTCTGTTGCATCAATAATTTCTT 252
Query 343 TCGACCCGGTTTCTCTGTAAACCGGAAGATTCACCACACCCAAATCGAAGATGACGATGA 402
||||||||||||||| ||||||||||||| |||||||| |||||||| || ||||||||
Sbjct 253 CCGACCCGGTTTCTCTCTAAACCGGAAGATCCACCACACACAAATCGACGACGACGATGA 312
Query 403 TGTCTGGATCAAGATGCTTGAAGAAGCCAAATCCGATGTTA-AACAAGAACCCATTTTAT 461
||||||||||||||| |||||||||||||||||||||| || |||||||||||||||| |
Sbjct 313 TGTCTGGATCAAGATCCTTGAAGAAGCCAAATCCGATG-TAGAACAAGAACCCATTTTGT 371
Query 462 CAAACTACTACTACGCTTCGATCACATCTCATCGATCTTTAGAGTCTGCTTTAGCTCACA 521
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 372 CAAACTACTACTACGCTTCCATCACATCTCATCGATCTTTAGATTCTGCTTTAGCTCACA 431
Query 522 TCCTCTCCGTAAAGCTCAGCAATTTAAACCTACCAAGCAACACACTCTTCGAACTGTTCA 581
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 432 TCCTCTCCGTAAAGCTCAGCAATTTAAACCTCCCAAGCAACACACTCTTCGAATTGTTCA 491
Query 582 TAAGCGTTTTAGAAGAAAGCCCTGAGATCATCGAATCCACGAAGCAAGATCTTATAGCAG 641
| || ||||||||||||||||||||||| |||||| | |||||||||||||||||||| |
Sbjct 492 TCAGTGTTTTAGAAGAAAGCCCTGAGATTATCGAAGCTACGAAGCAAGATCTTATAGCTG 551
Query 642 TCAAAGAAAGAGACCCAGCTTGTATAAGCTACGTTCATTGCTTCTTGGGCTTCAAAGGCT 701
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 552 TTAAAGAAAGAGACCCAGCTTGTATAAGCTACGTTCATTGCTTCTTGGGTTTCAAAGGCT 611
Query 702 TCCTCGCTTGTCAAGCTCATCGAATAGCTCATACCCTCTGGAAACAGAACAGAAAAATCG 761
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 612 TCCTCGCTTGTCAAGCTCATCGAATAGCTCATAAGCTCTGGAAACAGAAGAGAAAAATCG 671
Query 762 TAGCTTTATTGATCCAAAACAGAGTATCAGAATCTTTCGCCGTCGATATTCATCCCGGAG 821
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||
Sbjct 672 TAGCTTTATTGATCCAAAACAGAGTATCGGAAGCTTTCGCCGTCGATATTCATCCGGGAG 731
Query 822 CGAAGATCGGAAAAGGGATTCTTTTAGACCATGCGACGGGCGTGGTGATCGGAGAGACGG 881
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 732 CGAAGATCGGAAAAGGGATTCTTTTAGACCATGCGACGGGGGTGGTGATCGGAGAGACGG 791
Query 882 CGGTGGTTGGAGACAATGTTTCGATTCTACACGGAGTGACCTTGGGAGGAACAGGGAAAC 941
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 792 CGGTGGTTGGAGACAATGTTTCGATTCTACACGGCGTGACGTTGGGAGGAACAGGGAAAC 851
Query 942 AGAGTGGTGATCGGCATCCGAAGATTGGTGATGGTGTGTTGATTGGAGCTGGGAGTTGTA 1001
||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||
Sbjct 852 AGAGTGGTGATCGGCATCCGAAGATAGGTGATGGAGTGTTGATTGGAGCTGGGACTTGTA 911
Query 1002 TATTGGGGAATATAACAATCGGTGAGGGAGCTAAGATTGGATCAGGGTCGGTGGTGGTTA 1061
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 912 TATTGGGGAATATAACAATTGGTGAGGGAGCTAAGATTGGATCAGGGTCGGTGGTGGTTA 971
Query 1062 AGGATGTGCCGGCGCGTACGACGGCGGTTGGAAATCCGGCGAGGTTGATTGGTGGGAAAG 1121
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 972 AGGATGTGCCGCCGCGTACGACGGCGGTTGGAAATCCGGCGAGATTGATTGGTGGGAAAG 1031
Query 1122 AGAATCCGAGAAAACATGATAAGATTCCTTGTCTGACTATGGACCAGACATCGTATTTAA 1181
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1032 AGAATCCGAGAAAACATGAGAAGATTCCTTGTCTGACTATGGACCAAACATCGTATTTAA 1091
Query 1182 CCGAGTGGTCTGATTATGTGATTTAA--CACAAATGTGTATTTCTTTCTTTCTTGTAACT 1239
|||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1092 CCGAATGGTCTGATTATGTGATTTAATTCACAA--GTGTATTTCTTTCTTTCTTGTAACT 1149
Query 1240 GATGATGATGAA 1251
|||||||||||
Sbjct 1150 AATGATGATGAA 1161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49826652519
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5