BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55928.1
Length=1273
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922977 jgi|Araly1|922977|scaffold_104258.1 584 5e-166
Ahg481627 jgi|Araly1|481627|fgenesh2_kg.4__687__AT2G27285.1 512 2e-144
> Ahg922977 jgi|Araly1|922977|scaffold_104258.1
Length=721
Score = 584 bits (316), Expect = 5e-166
Identities = 481/559 (86%), Gaps = 17/559 (3%)
Strand=Plus/Plus
Query 363 CTTCCTATTGCTCCAATACTTGGTGAAGATGAAGAAGACAACGATGTGGACAAGGAGATT 422
|||| || ||||||| || ||||| ||||| ||||||||||||||||| | ||| |||
Sbjct 78 CTTCGTACTGCTCCATTATTTGGTCAAGAT---GAAGACAACGATGTGGATATGGAAATT 134
Query 423 TCTCGTCAAGCTTCAAAGACCAAGTCTCTTAAGA-AATTTGAGGAGCAGCATAAGAAAGC 481
||||| |||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 135 TCTCGACAAGCTTCAAAGACCAAGGGTCTTAAGAGAA-TTGAGGAGCAGCATAAGAAAGC 193
Query 482 CTTGGAGGAAGACCCTTGTGCTTTTGCTTACGATGAAGTTTATGATGACACGAAACAGGA 541
||||||||| ||||||||||||| |||||||||||||||||||||| | |||| | ||
Sbjct 194 CTTGGAGGAGGACCCTTGTGCTTATGCTTACGATGAAGTTTATGATCAGTTGAAAAAAGA 253
Query 542 AGCACCTCTTCCACGACTACATGAACGTCAAGAGTGCAATAAGCCTATATATAACCAGCT 601
|||| |||||||||| | ||||| || ||||| ||| | | | |||| ||||||
Sbjct 254 AGCATATCTTCCACGAATGCATGATTGTGAAGAGCCCAA---GTCAAGATATGCCCAGCT 310
Query 602 TAT-GAAGGAAA-AGGCAGACCGGAGACAGAAAGAACGTGAGATAGTTTACGAGAGAAAG 659
|| || ||||| |||| ||||| ||||||||||||||||| |||||||| || ||||||
Sbjct 311 -ATTGA-GGAAACAGGCTGACCGTAGACAGAAAGAACGTGAAATAGTTTATGAAAGAAAG 368
Query 660 CTTGCGAAAGAGAGAGCCAAAGAGCAACATCTTTTTCCAGATCAAGTTAAGGTTGTAACC 719
||||| |||||||| |||||||| ||||||||||||||||||||||| ||| |||| ||
Sbjct 369 CTTGCCAAAGAGAGGGCCAAAGACCAACATCTTTTTCCAGATCAAGTAAAGATTGTTACT 428
Query 720 GGTAGT-TATAAAAGGAAACTAGAGGAACGAGATCAATGGCTCTCAGAAGAAAGATTGCG 778
||| | |||||||||||||||||||||||||| |||||||| ||| ||||||||||||
Sbjct 429 GGT-GCCTATAAAAGGAAACTAGAGGAACGAGAACAATGGCTGTCACAAGAAAGATTGCT 487
Query 779 TGAACTTGGAGAGGAAAAAGATGATGTTACAAAGAAGA-AGGACTTGAGTGATTTCTACT 837
||||||| ||| ||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 488 TGAACTTCTAGAAGAAAAAGATGATGTTACAAAGAAGACAG-ACTTGAGTGATTTCTACT 546
Query 838 TCAACATTGGGAAAAATGTGGCGTTTGGAGCTCGAGATATCAAAGCTAGAGAGACAGAGA 897
|||||||||| ||||||||| | |||||||||||||||||||| ||||||||| || |||
Sbjct 547 TCAACATTGGAAAAAATGTGACATTTGGAGCTCGAGATATCAATGCTAGAGAGGCAAAGA 606
Query 898 GGCTCAAGGAGCAAAGAAA 916
|| ||||||| |||| |||
Sbjct 607 GGTTCAAGGAACAAA-AAA 624
> Ahg481627 jgi|Araly1|481627|fgenesh2_kg.4__687__AT2G27285.1
Length=1147
Score = 512 bits (277), Expect = 2e-144
Identities = 467/556 (84%), Gaps = 24/556 (4%)
Strand=Plus/Plus
Query 370 TTGCTCCAATACTTGGTGAAGATGAAGAAGA-CAACGATGTGGACAAGGAGATTTCTCGT 428
||||| ||||| |||||| | | |||||||| | ||||||| || |||||||||||||||
Sbjct 116 TTGCTTCAATATTTGGTG-A-A-GAAGAAGATC-ACGATGTCGAGAAGGAGATTTCTCGT 171
Query 429 CAAGCTTCAAAGACCAA-GTCTCTTAA-GAAATTTGAGGAGCAGCATAAGAAAGCCTTGG 486
|||||||||||||| || | ||||||| |||||| ||||||||||||||||||||||| |
Sbjct 172 CAAGCTTCAAAGACTAAAG-CTCTTAAAGAAATT-GAGGAGCAGCATAAGAAAGCCTTAG 229
Query 487 AGGAAGACCCTTGTGCTTTTGCTTACGATGAAGTTTATGATGACACGAAACAGGAAGCAC 546
|||| || |||| |||||||| || ||||||||||||||||| | ||||||| ||||
Sbjct 230 AGGAGGATCCTTCAGCTTTTGCGTATGATGAAGTTTATGATGATATGAAACAGAAAGCTG 289
Query 547 CTCTTCCACGACTACATGAACGTC-AAGAGTGCAATAAGCCTATATATA-ACCAGC-TTA 603
|||||||||| | || || || | |||| |||| ||| | ||||| || ||| ||
Sbjct 290 TTCTTCCACGAATGCAAGATCG-CGAAGAACGCAA---GCCAAGATATATAC-AGCATT- 343
Query 604 TGAAGGAAA-AGGCAGACCGGAGACAGAAAGAACGTGAGATAGTTTACGAGAGAAAGCTT 662
||| | ||| ||||||| || ||| ||||||||| ||| |||||||||||||||||||||
Sbjct 344 TGATG-AAACAGGCAGAACGTAGAGAGAAAGAACATGAAATAGTTTACGAGAGAAAGCTT 402
Query 663 GCGAAAGAGAGAGCCAAAGA-GCAACATCTTTTTCCAGATCAAGTTAAGGTTGTAACCGG 721
||||| ||||| | ||||| | ||||||||||| | ||| ||| ||| ||||||| ||
Sbjct 403 GCGAAGGAGAGGGAGAAAGATG-AACATCTTTTTTCGGATAAAGAAAAGTTTGTAACTGG 461
Query 722 TAG-TTATAAAAGGAAACTAGAGGAACGAGATCAATGGCTCTCAGAAGAAAGATTGCGTG 780
| | ||||||||||||||| ||||||| | | ||||||| | ||||||||||||||||
Sbjct 462 T-GCTTATAAAAGGAAACTTGAGGAACAAAAGAAATGGCTGGCGGAAGAAAGATTGCGTG 520
Query 781 AACTTGGAGAGGAAAAAGATGATGTTACAAAGAAGAAGGACTTGAGTGATTTCTACTTCA 840
||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 521 AACTTCGAGAGGAAAGAGATGATGTTACAAAGAAGAAAGACTTGAGTGATTTCTACTTCA 580
Query 841 ACATTGGGAAAAATGTGGCGTTTGGAGCTCGAGATATCAAAGCTAGAGAGACAGAGAGGC 900
||||||| ||||||||||| |||||||||||||||| | |||||| |||| |||||| |
Sbjct 581 ACATTGGAAAAAATGTGGCATTTGGAGCTCGAGATAACGAAGCTAAAGAGGTAGAGAGAC 640
Query 901 TCAAGGAGCAAAGAAA 916
| |||| ||||||||
Sbjct 641 TTGAGGAACAAAGAAA 656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47577400416
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5