BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55940.1
Length=2052
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924130 jgi|Araly1|924130|scaffold_105411.1 1242 0.0
Ahg924121 jgi|Araly1|924121|scaffold_105402.1 828 0.0
Ahg924124 jgi|Araly1|924124|scaffold_105405.1 741 0.0
Ahg924128 jgi|Araly1|924128|scaffold_105409.1 638 0.0
Ahg924126 jgi|Araly1|924126|scaffold_105407.1 616 3e-175
Ahg477012 jgi|Araly1|477012|fgenesh2_kg.2__2142__AT1G78490.1 165 1e-39
Ahg333193 jgi|Araly1|333193|fgenesh1_pm.C_scaffold_122000001 115 1e-24
> Ahg924130 jgi|Araly1|924130|scaffold_105411.1
Length=1543
Score = 1242 bits (672), Expect = 0.0
Identities = 781/830 (94%), Gaps = 21/830 (3%)
Strand=Plus/Plus
Query 1174 AAGGCACGCAGCAATGTGATGAAGATGCTAAAAAGAATGTTCAAAGAGAGGAGAGAAGAA 1233
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 708 AAGGCACGCAGAAATGTGATGAAGATGATAAAAAGAATGTTCAAAGAGAGGAGAGAAGAA 767
Query 1234 GCAACATCGGATGACTCAAAATATGGAGACTTCATGGAGACAATGATATATGAGGTGGAG 1293
| |||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 768 GGAACATCGGATGAATTAAAATATGGAGACTTCATGGAGACGATGATATATGAGGTGGAG 827
Query 1294 AAAGAAGGCGATACGATCAACGAGGAAAGATCAGTAGAGCTAATACTTAGTTTACTGATT 1353
||||||||||||||| | |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 828 AAAGAAGGCGATACGGTGAACGAGGAAAGATCTGTAGAGCTAATACTAAGTTTACTGATT 887
Query 1354 GCGTCTTATGAAACTACTTCTACTATGACTGCATTAACTGTGAAATTCATAGCTGAAAAC 1413
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 888 GCGTCTTATGAAACTACTTCTACAATGACTGCACTAACTGTGAAATTCATAGCTGAAAAC 947
Query 1414 CCCAAAGTGCTTATGGAGCTGAAGAGAGAACATGAGACCATCCTCCAAAACAGAGCTGAT 1473
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 948 CCCAAAGTGCTTATGGAGCTGAAGAGAGAGCATGAGACCATCCTCCATAACAGAGCTGAT 1007
Query 1474 AAAGAATCTGGAGTTACTTGGAAAGAATATAGATCCATGATGAATTTCACCCATATGGTT 1533
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1008 AAAGAGTCTGGAGTTACTTGGAAAGAATATAGATCCATGATGACTTTCACCCATATGGTT 1067
Query 1534 ATCAATGAGTCTCTTCGTTTAGGAAGTTTGTCACCTGCTATGTTTAGAAAGGCGGTGAAT 1593
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1068 ATCAATGAGTCTCTTCGTTTAGGAAGTTTGTCACCTGCTATGTTTAGAAAGGTGGTGAGT 1127
Query 1594 GATGTGGAGATCAAAGG---GT---A-T------------A--CAATTCCAGCAGGATGG 1632
||||||||||||||||| || | | | |||||||||||||||||
Sbjct 1128 GATGTGGAGATCAAAGGCAAGTTTGAGTCTCTCTTTTGGTATACAATTCCAGCAGGATGG 1187
Query 1633 ATTGTATTGGTGGTTCCATCTCTTCTTCATTATGACCCTCAAATCTATGAACAACCATGT 1692
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 ATTGTATTGGTTGTTCCATCTCTTCTTCATTATGACCCTCAAATCTATGAACAACCATGT 1247
Query 1693 GAGTTTAATCCATGGAGATGGGAGGGGAAAGAATTGCTTTCTGGCTCTAAAACGTTCATG 1752
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1248 GAGTTTAATCCATGGAGATGGGAGGGGAAGGAATTGCTTTGTGGCTCTAAAACGTTCATG 1307
Query 1753 GCGTTTGGTGGTGGTGCAAGACTATGTGCAGGAGCAGAGTTTGCTAGGCTTCAGATGGCT 1812
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1308 GCGTTTGGTGGTGGTGCAAGACTATGTGCAGGAGCAGAGTTTGCTAGGCTTGGGATGGCT 1367
Query 1813 ATATTTCTTCATCATCTAGTCACAACGTATGACTTCTCTTTGATCGATAAATCTTATATC 1872
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1368 ATATTTCTTCATCATCTAGTCACAACGTATGACTTGTCTTTGATCGATAAATCTTATATC 1427
Query 1873 ATCCGAGCACCCTTACTTCGATTCTCCAAGCCGATACGCATAACGATCTCCGAGAATCCT 1932
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 ATTCGAGCACCCTTACTTCGATTCTCCAAGCCGATACGCATAACGATCTCCGAGAATCCT 1487
Query 1933 TTAAGTTCATCTCATCAAAATGCAAATCTTTTTTAGTATTGTGTTATGAA 1982
||||||||||| |||||| ||||||||||| |||||||||||||||||||
Sbjct 1488 TTAAGTTCATCCCATCAATATGCAAATCTTCTTTAGTATTGTGTTATGAA 1537
Score = 1133 bits (613), Expect = 0.0
Identities = 671/700 (96%), Gaps = 0/700 (0%)
Strand=Plus/Plus
Query 427 GATATTATGAAAGAAATGTGGGGTGTTGCACTGAGTTTTGTTATAGCTTTAGTGGTCGTC 486
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 9 GATATTAAGAAAGAAATGTGGGGTGTTGCACTGAGTGTTGTTATAGCTTTAGTGGTCGTC 68
Query 487 AAGATCAGTCTCTGGCTCTATAGATGGGCTAACCCTAACTGCTCCGGCAAACTACCTCCA 546
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 69 AAGATCAGTCTCTGGCTCTATAGATGGGCTAACCCTAACTGCTCCGGCAAGCTACCTCCG 128
Query 547 GGTTCAATGGGGTTTCCGGTGATCGGAGAAACCGTTGAGTTCTTCAAACCTTACAGTTTC 606
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 129 GGTTCAATGGGGTTTCCGGTGATCGGAGAAACCATTGAGTTCTTCAAACCTTACAGTTTC 188
Query 607 AACGAAATCCATCCATTTGTCAAGAAAAGAATGTTCAAGCACGGTGGTTCATTATTCCGG 666
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 189 GACGAAATCCATCCATTTGTCAAGAAAAGAATGTTCAAGCACGGTGGTTCGTTGTTCCGG 248
Query 667 ACGAATATCCTCGGCTCTAAAACGATTGTTTCGACAGATCCGGAAGTGAACTTTGAGATT 726
|||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 249 ACGAGTATCCTTGGCTCTAAAACGATTGTTTCGACAGACCCGGAAGTGAACTTTGAGATT 308
Query 727 CTCAAACAAGAGAACAGGTGTTTCATCATGAGCTATCCAGAAGCTCTTGTTAGAATCTTT 786
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 309 CTCAAACAAGACAACAGGGGTTTCATCATGAGCTATCCAGAAGCTCTTGTTAGAATCTTT 368
Query 787 GGGAAAGATAACTTGTTCTTCAAGCAAGGCAAGGACTTCCACAGGTACATGAGACATATT 846
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 369 GGGAAAGATAACTTGTTCTTCAAGCAAGGAAAGGACTTCCACAGGTACATGAGACAGATT 428
Query 847 GCTCTGCAGCTTCTTGGCCCTGAGTGTTTGAAGCAGAGATTTATACAACAAATCGACATA 906
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 429 GCTCTGCAGCTTCTTGGCCCTGAACGTTTGAAGCAGAGATTTATACAACAAATCGACATA 488
Query 907 GCAACAAGCGAGCATCTCAAATCTGTCTCCTTCCAAGGCGTTGTAGACGTCAAAGATACT 966
|| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 489 GCTACACGCGAGCATCTCAAATCTGTCTCCTTCCAAGGCGTTTTAGACGTCAAAGACACT 548
Query 967 AGTGGAAGATTGATATTGGAACAAATGATCCTGATGATCATAAGTAACATCAAACCTGAG 1026
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 549 AGTGGAAGATTGATATTGGAACAAATGATCCAGATGATCATAAGTAACATCAAACCTGAG 608
Query 1027 ACTAAGAGCAAACTGATAGAGAGTTTTAGAGATTTCAGCTTTGATTTGGTTAGGTCCCCT 1086
||||||| |||||||||||| || ||||||||||||||||| || ||||||| |||||||
Sbjct 609 ACTAAGATCAAACTGATAGAAAGCTTTAGAGATTTCAGCTTCGACTTGGTTATGTCCCCT 668
Query 1087 TTTGATCCTTCTTTTTGGAACGCTCTTTACAATGGTCTTA 1126
||||||||||||||||||||||||||||||||||| ||||
Sbjct 669 TTTGATCCTTCTTTTTGGAACGCTCTTTACAATGGACTTA 708
> Ahg924121 jgi|Araly1|924121|scaffold_105402.1
Length=499
Score = 828 bits (448), Expect = 0.0
Identities = 478/493 (97%), Gaps = 0/493 (0%)
Strand=Plus/Plus
Query 1490 CTTGGAAAGAATATAGATCCATGATGAATTTCACCCATATGGTTATCAATGAGTCTCTTC 1549
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 CTTGGAAAGAATATAGATCCATGATGAAATTCACCCATATGGTTATCAATGAGTCTCTTT 60
Query 1550 GTTTAGGAAGTTTGTCACCTGCTATGTTTAGAAAGGCGGTGAATGATGTGGAGATCAAAG 1609
||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 61 GTTTAGGGAGTTTGTCACCTGCTATGTTTAGAAAGGTGGTGAGTGATGTGGAGATCAAAG 120
Query 1610 GGTATACAATTCCAGCAGGATGGATTGTATTGGTGGTTCCATCTCTTCTTCATTATGACC 1669
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 GGTATACAATTCCAGCAGGATGGATTGTATTGGTTGTTCCATCTCTTCTTCATTATGACC 180
Query 1670 CTCAAATCTATGAACAACCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAATTGC 1729
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 CTCAAATCTATGAACAACCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAGGAATTGC 240
Query 1730 TTTCTGGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTGCAAGACTATGTGCAGGAGCAG 1789
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTTGTGGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTGCAAGACTATGTGCAGGAGCAG 300
Query 1790 AGTTTGCTAGGCTTCAGATGGCTATATTTCTTCATCATCTAGTCACAACGTATGACTTCT 1849
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 AGTTTGCTAGGCTTGGGATGGCTATATTTCTTCATCATCTAGTCACAACGTATGACTTGT 360
Query 1850 CTTTGATCGATAAATCTTATATCATCCGAGCACCCTTACTTCGATTCTCCAAGCCGATAC 1909
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 361 CTTTGATCGATAAATCTTATATCATTCGAGCACCCTTGCTTCGATTCTCCAAGCCGATAC 420
Query 1910 GCATAACGATCTCCGAGAATCCTTTAAGTTCATCTCATCAAAATGCAAATCTTTTTTAGT 1969
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 421 GCATAACGATCTCCGAGAATCCTTTAAGTTCATCCCATCAATATGCAAATCTTTTTTAGT 480
Query 1970 ATTGTGTTATGAA 1982
|||||||||||||
Sbjct 481 ATTGTGTTATGAA 493
> Ahg924124 jgi|Araly1|924124|scaffold_105405.1
Length=520
Score = 741 bits (401), Expect = 0.0
Identities = 480/514 (93%), Gaps = 21/514 (4%)
Strand=Plus/Plus
Query 1490 CTTGGAAAGAATATAGATCCATGATGAATTTCACCCATATGGTTATCAATGAGTCTCTTC 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTGGAAAGAATATAGATCCATGATGAATTTCACCCATATGGTTATCAATGAGTCTCTTC 60
Query 1550 GTTTAGGAAGTTTGTCACCTGCTATGTTTAGAAAGGCGGTGAATGATGTGGAGAT----- 1604
||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 61 GTTTAGGGAGTTTGTCACCTGCTATGTTTAGAAAGGTGGTGAGTGATGTGGAGATCAAAG 120
Query 1605 -CAA-----AG----------GGTATACAATTCCAGCAGGATGGATTGTATTGGTGGTTC 1648
||| || |||||||||||||||||||||||||||||||||| ||||
Sbjct 121 GCAAGTTTGAGTCTCTCTTTTGGTATACAATTCCAGCAGGATGGATTGTATTGGTTGTTC 180
Query 1649 CATCTCTTCTTCATTATGACCCTCAAATCTATGAACAACCATGTGAGTTTAATCCATGGA 1708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CATCTCTTCTTCATTATGACCCTCAAATCTATGAACAACCATGTGAGTTTAATCCATGGA 240
Query 1709 GATGGGAGGGGAAAGAATTGCTTTCTGGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTG 1768
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 GATGGGAGGGGAAGGAATTGCTTTGTGGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTG 300
Query 1769 CAAGACTATGTGCAGGAGCAGAGTTTGCTAGGCTTCAGATGGCTATATTTCTTCATCATC 1828
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 CAAGACTATGTGCAGGAGCAGAGTTTGCTAGGCTTGGGATGGCTATATTTCTTCATCATC 360
Query 1829 TAGTCACAACGTATGACTTCTCTTTGATCGATAAATCTTATATCATCCGAGCACCCTTAC 1888
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 361 TAGTCACAACGTATGACTTGTCTTTGATCGATAAATCTTATATCATTCGAGCACCCTTGC 420
Query 1889 TTCGATTCTCCAAGCCGATACGCATAACGATCTCCGAGAATCCTTTAAGTTCATCTCATC 1948
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 421 TTCGATTCTCCAAGCCGATACGCATAACGATCTCCGAGAATCCTTTAAGTTCATCCCATC 480
Query 1949 AAAATGCAAATCTTTTTTAGTATTGTGTTATGAA 1982
|| |||||||||||||||||||||||||||||||
Sbjct 481 AATATGCAAATCTTTTTTAGTATTGTGTTATGAA 514
> Ahg924128 jgi|Araly1|924128|scaffold_105409.1
Length=472
Score = 638 bits (345), Expect = 0.0
Identities = 365/375 (97%), Gaps = 0/375 (0%)
Strand=Plus/Plus
Query 1608 AGGGTATACAATTCCAGCAGGATGGATTGTATTGGTGGTTCCATCTCTTCTTCATTATGA 1667
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 92 AGGGTATACAATTCCAGCAGGATGGATTGTATTGGTTGTTCCATCTCTTCTTCATTATGA 151
Query 1668 CCCTCAAATCTATGAACAACCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAATT 1727
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 152 CCCTCAAATCTATGAACAACCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAGGAATT 211
Query 1728 GCTTTCTGGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTGCAAGACTATGTGCAGGAGC 1787
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 GCTTTGTGGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTGCAAGACTATGTGCAGGAGC 271
Query 1788 AGAGTTTGCTAGGCTTCAGATGGCTATATTTCTTCATCATCTAGTCACAACGTATGACTT 1847
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 AGAGTTTGCTAGGCTTGGGATGGCTATATTTCTTCATCATCTAGTCACAACGTATGACTT 331
Query 1848 CTCTTTGATCGATAAATCTTATATCATCCGAGCACCCTTACTTCGATTCTCCAAGCCGAT 1907
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 332 GTCTTTGATCGATAAATCTTATATCATTCGAGCACCCTTGCTTCGATTCTCCAAGCCGAT 391
Query 1908 ACGCATAACGATCTCCGAGAATCCTTTAAGTTCATCTCATCAAAATGCAAATCTTTTTTA 1967
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 392 ACGCATAACGATCTCCGAGAATCCTTTAAGTTCATCCCATCAATATGCAAATCTTTTTTA 451
Query 1968 GTATTGTGTTATGAA 1982
|||||||||||||||
Sbjct 452 GTATTGTGTTATGAA 466
> Ahg924126 jgi|Araly1|924126|scaffold_105407.1
Length=599
Score = 616 bits (333), Expect = 3e-175
Identities = 362/376 (96%), Gaps = 2/376 (1%)
Strand=Plus/Plus
Query 1608 AGGGTATACAATTCCAGCAGGATGGATTGTATTGGTGGTTCCA-TCTCTTCTTCATTATG 1666
|||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||
Sbjct 205 AGGGTATACAATTCCAGCAGGATGGATTGTATTGGTTGTTCCATTTTCTTCTTCATTATG 264
Query 1667 ACCCTCAAATCTATGAACAACCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAAT 1726
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 265 ACCCTCAAATCTATGAACAACCATGTGAGTTTAATCCATGGAGATGGGAGGGTAAGGAAT 324
Query 1727 TGCTTTCTGGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTGCAAGACTATGTGCAGGAG 1786
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 325 TGCTTTGTGGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTGCAAGACTATTTGCAGGAG 384
Query 1787 CAGAGTTTGCTAGGCTTCAGATGGCTATATTTCTTCATCATCTAGTCACAACGTATGACT 1846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 CAGAGTTTGCTAGGCTTCAGATGGCTATATTTCTTCATCATCTAGTCACAACGTATGACT 444
Query 1847 TCTCTTTGATCGATAAATCTTATATCATCCGAGCACCCTTACTTCGATTCTCCAAGCCGA 1906
| |||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||
Sbjct 445 TGTCTTTGATCGATAAATCTTATATCATTCGAGCACCCTTGCTTCAATTCTCCAAGCCGA 504
Query 1907 TACGCATAACGATCTCCGAGAATCCTTTAAGTTCATCTCATCAAAATGCAAATCTTTTTT 1966
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 505 TACGCATAACGATCTCCGAGAATCCTTTAAGTTCATCCCATCAATATGCAAATCTTTTTT 564
Query 1967 AGTATTGTGTTATGAA 1982
|||||||||||||||
Sbjct 565 -GTATTGTGTTATGAA 579
Score = 207 bits (112), Expect = 2e-52
Identities = 118/121 (98%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 1490 CTTGGAAAGAATATAGATCCATGATGAATTTCACCCATATGGTTATCAATGAGTCTCTTC 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTGGAAAGAATATAGATCCATGATGAATTTCACCCATATGGTTATCAATGAGTCTCTTC 60
Query 1550 GTTTAGGAAGTTTGTCACCTGCTATGTTTAGAAAGGCGGTGAATGATGTGGAGATCAAAG 1609
||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 61 GTTTAGGGAGTTTGTCACCTGCTATGTTTAGAAAGGTGGTGAGTGATGTGGAGATCAAAG 120
Query 1610 G 1610
|
Sbjct 121 G 121
> Ahg477012 jgi|Araly1|477012|fgenesh2_kg.2__2142__AT1G78490.1
Length=1579
Score = 165 bits (89), Expect = 1e-39
Identities = 205/259 (79%), Gaps = 16/259 (6%)
Strand=Plus/Plus
Query 1574 TGTTTAGAAAGGCGGTGAATGATGTGGAGATCAAAGG---G-TATACAATTCCAGCAGGA 1629
||||| ||||||| || | ||||| ||||||||||| | ||||||||||| || ||
Sbjct 1174 TGTTTCGAAAGGCACTGCACGATGTTGAGATCAAAGGCAAGATATACAATTCCGGCTGGT 1233
Query 1630 TGGATTGTATTGGTGGTTCCATC-TCTTC--TTCATTATGACCCTCA-AATCTATGAACA 1685
||||||| ||| ||| || | || | |||||||||| ||| | || ||||| | |
Sbjct 1234 TGGATTG---TGGCAGTTGCACCTTCAGCGGTTCATTATGATCCT-ATAAACTATG-AGA 1288
Query 1686 A-CCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAATTG-CTTTCTGGCTCTAAA 1743
| |||| |||||||||||||||||||||||||||||||||| || || || ||||||
Sbjct 1289 ACCCATTTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAAATGACTCGGGGG-TCTAAA 1347
Query 1744 ACGTTCATGGCGTTTGGTGGTGGTGCAAGACTATGTGCAGGAGCAGAGTTTGCTAGGCTT 1803
||||||||||||||||| |||| | ||||| |||| ||| ||||||||||| |||||
Sbjct 1348 ACGTTCATGGCGTTTGGAAGTGGAGTTAGACTTTGTGTAGGTGCAGAGTTTGCGCGGCTT 1407
Query 1804 CAGATGGCTATATTTCTTC 1822
|| ||||| || || ||||
Sbjct 1408 CAAATGGCAATCTTCCTTC 1426
> Ahg333193 jgi|Araly1|333193|fgenesh1_pm.C_scaffold_122000001
Length=1350
Score = 115 bits (62), Expect = 1e-24
Identities = 126/155 (81%), Gaps = 12/155 (8%)
Strand=Plus/Plus
Query 1612 TATACAATTCCAGCAGGATGGATTGTATTGGTGGTTCCATC-TCTTC--TTCATTATGAC 1668
||||||||||| || || ||||||| ||| ||| || | || | ||||||||||
Sbjct 1090 TATACAATTCCGGCTGGTTGGATTG---TGGCAGTTGCACCTTCAGCGGTTCATTATGAT 1146
Query 1669 CCT-CAAATCTATGAACAA-CCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAAT 1726
||| |||| ||||| | || |||| ||||||||||||||||||||||||||||||||||
Sbjct 1147 CCTACAAA-CTATG-AGAACCCATTTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAAA 1204
Query 1727 TGCTTTC-TGGCTCTAAAACGTTCATGGCGTTTGG 1760
|| || || |||||||||||||||||||||||
Sbjct 1205 TG-ACTCGGGGGTCTAAAACGTTCATGGCGTTTGG 1238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77170836370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5