BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55960.1
Length=1723
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314809 jgi|Araly1|314809|fgenesh1_pm.C_scaffold_1003589 1550 0.0
Ahg904201 jgi|Araly1|904201|Al_scaffold_0003_1329 593 1e-168
> Ahg314809 jgi|Araly1|314809|fgenesh1_pm.C_scaffold_1003589
Length=1158
Score = 1550 bits (839), Expect = 0.0
Identities = 1085/1196 (91%), Gaps = 47/1196 (4%)
Strand=Plus/Plus
Query 210 CTGGGCTTTGTCTTTCTTCTCCGACGAACTTTCTCGGCGAGCTGTTTCCGATTGTTATTT 269
|||||||||||||||||||||||| |||||||| ||||||||| |||| |||| ||||||
Sbjct 9 CTGGGCTTTGTCTTTCTTCTCCGAAGAACTTTCCCGGCGAGCTCTTTCTGATTCTTATTT 68
Query 270 ATGGACCACCGCGATTTCGCTTCTCTTAAtccttctccttcatatcttcttttccactaa 329
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 69 ATGGGCCACCGCGATTTCGCTTCTCTTAATCCTTCTATTTCATATCTTCTTTTCCTCTAA 128
Query 330 atttcgcttcttcacttctgctccttcttcttcttcttcttcttcttcttcttcCTCTCC 389
||||||||||||||||||| | |||||||||| || |||| | || | | ||
Sbjct 129 ATTTCGCTTCTTCACTTCT--T-CTTCTTCTTC-TC--CTTC-AC--CTAC--CGAATCA 177
Query 390 CTCTACAGAATCAGTTCCCGCGAACTCTCAATCAAGGATATCCAAACTAGTCTCTGATGA 449
| | | ||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 178 GT-TTC----TCA--TGCCATAAACTCTCAATCAAGGATATCCAAACTAGTCTCTGATGA 230
Query 450 AGATTTGAAATTTCTGATCGAGAATTTGGAGGAGGAAACAAATGATTCCACGGAGATATG 509
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 231 AGATTTGAAATTTCTGATCGAGAATTT---GGAGGAAACAAATGATTCTACGGAGATATG 287
Query 510 GGAACATGTTATTCACAAAAGCAACGATCGCATTTCATACTCTGCTAAACGCTGCAAACC 569
|||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 288 GGAAAATGTTATTCACAAAAGCAACCATCGCATTTCATACACTGCTAAACGCTGCAAACC 347
Query 570 CAAAGATGGCGGTGGTCCTATGAAGTACCTAAGTGTCACGGTCTTCGAGGGTTTCTCTGC 629
||||||||| |||||||||||||||||||||||||| ||||||||||||| || ||||||
Sbjct 348 CAAAGATGGTGGTGGTCCTATGAAGTACCTAAGTGTTACGGTCTTCGAGGATTGCTCTGC 407
Query 630 AGAGATTGTGAGGGACTTTTACATGGACAATGATTATAGGAAACTATGGGATAAGACTGT 689
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 AGAGATTGTGAGGGATTTTTACATGGACAATGATTATAGGAAACTATGGGATAAGACTGT 467
Query 690 GGTTGAGCATGAGCAGTTGCAGGTTGATAGTAATACTGGAATTGAGATTGGTCGCACCAT 749
|||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| ||
Sbjct 468 TGTTGAGCATGAGCAGTTGCAGGTTGACAGTAGTACCGGAATTGAGATTGGTCGCACAAT 527
Query 750 TAAAAAGTTTCCCTTGTTGACATCGAGAGAGTACGTTCTAGCTTGGAGATTGTGGCAAGG 809
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 528 CAAAAAGTTTCCCTTGTTGACATCAAGAGAGTACGTACTAGCTTGGAGATTGTGGCAAGG 587
Query 810 AAAGGAGAAGAAGTTCTACTGTTTCACAAAGGAATGTGATCACAATATGGTACCACAACA 869
||||| | ||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 588 AAAGG-G--CAAGTTTTACTGTTTCACAAAGGAATGTGATCACAATATGGTGCCGCAACA 644
Query 870 GAGGAAGTATGTACGTGTAAGTTACTTTAGATCTGGTTGGCGAATCAGGCAAGTTCCCGG 929
|||||| || ||||||||||| | | || | || | || | ||||||||
Sbjct 645 GAGGAATTACGTACGTGTAAG---C--T--AT-T--TT--AG-AT----C-TGTTCCCGG 686
Query 930 TAGAAATGCGTGTGAGATCAAAATGTTTCACCAGGAGAATGCTGGGTTAAATGTTGAGAT 989
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 TCGAAATGCTTGTGAGATCAAAATGTTTCACCAGGAGAATGCTGGGTTAAATGTTGAGAT 746
Query 990 GGCCAAGCTCGCCTTCTCAAAAGGCATATGGAGTTACGTTTGTAAGATGGAAAACGCTCT 1049
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 GGCGAAGCTCGCCTTCTCAAAAGGCATATGGAGTTACGTTTGTAAGATGGAAAACGCTCT 806
Query 1050 TTGTAAATACATAGCAACCAGTCATAGAACCCAAGGACCCATTCTATCTGCTGTCACCTT 1109
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 807 TTGTAAATACATAGCAACCAGTCATAGAACCCAAGGACCCATTTTATCTGCTGTCACCTT 866
Query 1110 AATGAAAGAGGTTCCATCAGAGTTAGAAACTGGGACAGATAATGTCACAGGCTCCA-TGG 1168
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 867 AATGAAAAAGGTTCCATCAGAGTTAGAAACTCAGACAGATAATGTCACAGCCTCCATTGG 926
Query 1169 AAACAAGTAGTGGTGAAGGAGTGTTGAGTCATGTTGTAGCCGCCAAACAGAAGaaaaaaa 1228
||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||
Sbjct 927 -AACAAGTAGTGGTGAAGGACTGTTAAGTCATGTTGTA---GCCAAACAGAAGAAAAAAT 982
Query 1229 TGAGAAAGCCATCAACGAAACTGATAGCAAAAGGTCTAGTACTTGTGGGCGGTGCGATCT 1288
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 TGAGAAAGCCATCAAAGAAACTGATAGCAAAAGGTCTAGTACTTGTGGGCGGTGCGATCT 1042
Query 1289 GCTTGTCCCGTGGTCCCTCAGCCTTAGGTGCTAAAGTCGCATTGGCTTACCTCTTGACGA 1348
| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 GTTTGTCCCGTGGTCACTCCGCCTTAGGTGCTAAAGTCGCATTGGCTTACCTCTTGACGA 1102
Query 1349 AGCTGAACAAACGTGGAACTTCTCTGAATCAGACCACCCAGACCACCACCATTTAA 1404
|||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 1103 AGCTGAACAAACGTGGAACTTCTCTGAATCAGACCATCCAGAACACCAGCATTTAA 1158
> Ahg904201 jgi|Araly1|904201|Al_scaffold_0003_1329
Length=3279
Score = 593 bits (321), Expect = 1e-168
Identities = 593/718 (83%), Gaps = 44/718 (6%)
Strand=Plus/Plus
Query 414 CTCTCAATCAAGGATATC--C-AAACTAGTCTCTGATGAAGATTTGAAA-TTTCTGATCG 469
||| |||||||| ||||| | | ||| || |||||||||||| | ||| |||| | |
Sbjct 228 CTCCCAATCAAGAATATCTACTACACTTGTTTCTGATGAAGATCT-AAAGGGTCTGTTTG 286
Query 470 AGAATTTGGAGGAGGAAACAAATGA--TTCCACGGAGATATGGGAACATGTTATTCACAA 527
| || || ||||||||||| ||| | | | ||||||||||| |||||||||| ||
Sbjct 287 AAAAATT---GGAGGAAACAAGTGAGGATGCTC--AGATATGGGAAAATGTTATTCAGAA 341
Query 528 AAGCAACGATCGCATTTCATACTCTGCTAAACGCTGCAAACCCAA-AGATGGCGGTGGTC 586
||||||| |||| | |||||| |||||||| |||||||| |||| |||| |||||||
Sbjct 342 AAGCAACCCTCGCGTCTCATACACTGCTAAATGCTGCAAA-CCAACAGAT---GGTGGTC 397
Query 587 CTATGAAGTACCTAAGTGTC-ACGGTCTTCGAGGGTTTCTCTG-CAGAGATTGTGAGGGA 644
| |||||||| | ||| | || || || |||| || ||| | ||||| || |||||||
Sbjct 398 CCATGAAGTATTTGAGT-ACTACAGTGTTTGAGGATTGCTC-GCCAGAGGTTTTGAGGGA 455
Query 645 CTTTTACATGGACAATGATTATAGGAAACTATGGGATAAGACTGTGGTTGAGCATGAGCA 704
|||||||||||||||||| || ||||||| ||||||||| ||||| ||||||||||||||
Sbjct 456 CTTTTACATGGACAATGAATACAGGAAACAATGGGATAAAACTGTCGTTGAGCATGAGCA 515
Query 705 GTTGCAGGTTGATAGTAATACTGGAATTGAGATTGGTCGCACCATTAAAAAGTTTCCCTT 764
|||||||||||| ||||||| |||||| |||||||||||||| || ||||||||||||||
Sbjct 516 GTTGCAGGTTGACAGTAATAGTGGAATCGAGATTGGTCGCACTATAAAAAAGTTTCCCTT 575
Query 765 GTTGACATCGAGAGAGTACGT-TCTAGCTTGGAGATTGTGGCAAGGAAAGGAGAAGAAGT 823
||| ||| | || ||||| || | |||| |||| ||||||| | || ||||| ||| |
Sbjct 576 GTTAACACCAAGGGAGTATGTAT-TAGCGTGGAAATTGTGGGAGGGGAAGGATAAGT--T 632
Query 824 TCTACTGTTTCA-CAAAGGAATGTGATCACAATATGGTACCACAACAGAGGAAGTATGTA 882
| |||||||||| ||| ||||||||||||||||||||| || ||||||||||||||||||
Sbjct 633 T-TACTGTTTCATCAA-GGAATGTGATCACAATATGGTGCCGCAACAGAGGAAGTATGTA 690
Query 883 CGTGTAAGTTACTTT-AGATCTGGTTGGCGAATCAGGCAAGTTCCCGGTAGAAATGCGTG 941
||||||||||| ||| ||||||||||||||||| ||| ||| | |||| || ||
Sbjct 691 CGTGTAAGTTA-TTTCAGATCTGGTTGGCGAATTAGGAAAGG-CA----AGAAC-GCTTG 743
Query 942 TGAGAT-CAAAATGTTTCACCAGGA-GAATGCTGGG-TTAAATGTTGAGATGGCCAAGCT 998
|||||| || | ||||||||||||| || ||| ||| ||||||||||||||||| |||||
Sbjct 744 TGAGATACACA-TGTTTCACCAGGAAGA-TGC-GGGATTAAATGTTGAGATGGCAAAGCT 800
Query 999 CGCCTTCTCAAAAGGCATATGGAGTTACGTTTGTAAGATGGAAAACGCTCTTTGTAAATA 1058
|| ||||| | ||||||||||||||||||||||||||||||||| || ||| |||| ||
Sbjct 801 TGCTTTCTCTAGAGGCATATGGAGTTACGTTTGTAAGATGGAAAATGCACTTCGTAAGTA 860
Query 1059 CATAGCAACCAGTCATAGAACCCAAGGACCCA-TTCTATCTGCTGTCACCTTAATGAA 1115
||| ||||||||||||||| ||||||| |||| || |||||||||| | |||||||||
Sbjct 861 CATTGCAACCAGTCATAGACCCCAAGGGCCCACTT-TATCTGCTGTAAGCTTAATGAA 917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64639145765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5