BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56000.1
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474667 jgi|Araly1|474667|fgenesh2_kg.1__4621__AT1G56000.1 2560 0.0
Ahg914725 jgi|Araly1|914725|Al_scaffold_0001_4979 1735 0.0
> Ahg474667 jgi|Araly1|474667|fgenesh2_kg.1__4621__AT1G56000.1
Length=1598
Score = 2560 bits (1386), Expect = 0.0
Identities = 1529/1598 (96%), Gaps = 10/1598 (1%)
Strand=Plus/Plus
Query 1 GCAAACCGATGGCAGCCACAACAATTTCGCCGGCGATTAGGAAACAAATGAGCAGCGTTG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 GCAAACCGATGGCAGCCACAACAATTTCGCCGGCGATTAGGAAACAAATGAGCACCGTTG 60
Query 61 CCGTCGCAATGAAGGTCGCCGTAATCGGCAGCGGAATTTCTGGAGCCGTGTGTGCATCGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCGTCGCAATGAAGGTCGCCGTAATCGGCAGCGGAATTTCTGGAGCCGTGTGTGCATCGA 120
Query 121 CTCTGGCAAGGAATGGCGTCTCCGTCACTATCTTCGACTCGGGTCGTGGACCTGGTGGAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCTGGCAAGGAATGGCGTCTCCGTCACTATCTTCGACTCGGGTCGTGGACCTGGTGGAC 180
Query 181 GCATGTCTCAAAGAAGAGAGATTGGAGAAGATGGGAAGGAGTTGATGTTCGACCATGGAG 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCATGTCTCAAAGGAGAGAGATTGGAGAAGATGGGAAGGAGTTGATGTTCGACCATGGAG 240
Query 241 CTCCATTTTTCTGTGTGAGCAACTCTGATGCCATGGCTCTTGTTCATGAGTGGGAATCCA 300
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 241 CTCCATTTTTCTGTGTGGGCAACTCTGATGCAATGGCTCTTGTTCATGAGTGGGAGTCCA 300
Query 301 GAGGTTTTGTTTCTGAATGGAAACAAGTTTTTGGGAGTTTTGATTGTGCCTCCAACAAGT 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 301 GAGGTTTTGTTTCTGAATGGAAACAAGTTTTTGGGAGTTTCGATTGTGCCTCCAACAAGT 360
Query 361 TTCTTGGCATCCAACAGGAAGGGGATGCAAAGAAGTATGTGGGTGTTCCGGGCATGAACT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCTTGGCATCCAACAGGAAGGGGATGCAAAGAAGTATGTGGGTGTTCCGGGCATGAACT 420
Query 421 CTATATCTAAGGCCTTGTGTAATGAGTCTGGTGTTAAGAGTATGTTTGGAACTGGTATTG 480
|||||||||||||||||||| | |||||||||||||| | ||||||||||||||||||||
Sbjct 421 CTATATCTAAGGCCTTGTGTCACGAGTCTGGTGTTAAAACTATGTTTGGAACTGGTATTG 480
Query 481 CCAAGATGGAATGGTTGGAAGAAGAGATACCATGGTTGTTGACAGATTCAAAAGGAGAAA 540
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 481 CCAAGCTGGAATGGTTGGAAGAAGAGATACCATGGTTGTTGACTGATTCAAAAGGAGATA 540
Query 541 ATTTGGGTCGTTTCGATGGAGTGGTTGCATCAGATAAAAACATTGTTTCTCCAAGGTTTA 600
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATTTGGGTCGTTTCTATGGAGTGGTTGCATCAGATAAAAACATTGTTTCTCCAAGGTTTA 600
Query 601 CTCAAGTAACTGGACTCCCACCGCCTCTGGACTTAAGTCTAGTCCCGGAGTTGGCGACTA 660
|||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 601 CTCAAGTAACCGGACTCCCACCGCCACTGGACTTAAGTCTAGTCCCAGAGTTGGCGACTA 660
Query 661 AGCTGCAAAACATTCCTGTTCTACCATGCTTCTCTCTTATGCTAGCTTTCAAGGAGCCGT 720
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGCTGCAAAATATTCCTGTTCTACCATGCTTCTCTCTTATGCTAGCTTTCAAGGAGCCGT 720
Query 721 TGTCCTCGATACCAGTAAAGGGCTTATCTTTCAAGAATTCAGAGATTTTGAGCTGGGCTC 780
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGTCTTCGATACCAGTAAAAGGCTTATCTTTCAAGAATTCAGAGATTTTGAGCTGGGCTC 780
Query 781 ACTGTGAAAGCACCAAGCCGGGACGGTCTACTGATAGTGAAAGGTGGATACTGCATTCTA 840
| ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 781 ATTGTGATAGCACCAAGCCTGGACGGTCTACTGATAGTGAAAGATGGATACTGCATTCTA 840
Query 841 CTCCAGACTATGCCAACAGTGTTATTGCTAAGACCGGCCTCCAAAAGCTATCGAGTGAAA 900
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 841 CTCCAGACTATGCCAACAGTGTTATTGCCAAGACGGGCCTCCAAAAGCTATCAAGTGAAA 900
Query 901 CACTAAACAAAATATCTGAAGAGATGTTCAAAGAGTTTCAGTGCTCAGGCCTTGTTAGTT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CACTAAACAAAATATCTGAAGAGATGTTCAAAGAGTTTCAGTGCTCAGGCCTTGTTAGTT 960
Query 961 CTCTCCCCTTTTTCATGAAAGCCCACAGATGGGGAAGTGCGTTTCCAGCCAAAAGCATAG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 961 CTCTCCCCTTTTTCATGAAAGCCCACAGATGGGGAAGTGCGTTTCCAGCCAGAAGCATAG 1020
Query 1021 CCGTAGAGGAGAGGTGCCTTTGGGATAGAAACAGGAATCTAGCAATCTGTGGAGATTTCT 1080
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CTGTAGAGGAGAGGTGCCTTTGGGATAGAAACAGGAATCTAGCAATCTGTGGAGATTTCT 1080
Query 1081 GTGTCAGCCCAAATGTTGAAGGTGCAATTCTCAGTGGCTTAGCTGCAGCGTCAAAGCTTT 1140
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1081 GTGTCAGCCCAAATGTCGAAGGTGCCATTCTCAGTGGCTTAGCTGCAGCGTCAAAGCTTT 1140
Query 1141 TGCAGACTTCTAGCTGCTTATAGGTAC-------CC-TATTGAGTGTGTCCCCAATACCT 1192
||||||||||||||||||||||||||| || |||||| ||| ||||||||||||
Sbjct 1141 TGCAGACTTCTAGCTGCTTATAGGTACGGAGGTACCATATTGAATGTATCCCCAATACCT 1200
Query 1193 CAAAACAGAGTAACAAAAACATTTATATAAAGATTCTACTAGAATCATGTAAAATGACTA 1252
| ||||||||||| | | |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1201 CGAAACAGAGTAATATATACATTTATATAAAGATTCTACTAGAATCATGTAAAATGACAA 1260
Query 1253 TGACAATCTCCCTCGTGAACTCTATCGGCCGATGAAACAGATACATATCGGAATATCATG 1312
|||| | | |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1261 CGACAGTGTTCCTCGTGAACTCTATCCGCCGATGAAACAGATACATATCGGAATATCATG 1320
Query 1313 TGATCTTCCTAAATCTCTACTTTGTTCCTTGAGAAATGATAGCCAGCGCAGTTCTATCGA 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TGATCTTCCTAAATCTCTACTTTGTTCCTTGAGAAATGATAGCCAGCGCAGTTCTATCGA 1380
Query 1373 TGAAAGTGCCAGTCGCAGTGCTTTTTGATGGATTTAATTGGCAACATCTACGAAAGAACC 1432
||||||||||| || | |||||| | |||||||| ||||||||||||||||||||||||
Sbjct 1381 TGAAAGTGCCATTCACGGTGCTTATCGATGGATTCGATTGGCAACATCTACGAAAGAACC 1440
Query 1433 ACTGCCTTGGCTATTCAATCACCTATCCCATCATGTACACAGGTAGTGATGTTTCATATT 1492
| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1441 AGTGCCTTGGCTATGCAATCACCTATCCCATCATGTCCACAGGTAGTGATGTTTCATATT 1500
Query 1493 ATCTTTTTGATCAATTGTTCTAGAGGTCCTTAATACCTTGAAACAAATGGAACTACGATG 1552
||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1501 ATCTTATTGATCAATCGTTCTAGAGGTCCCTAATACCTTGAAACAAATGGAACTACGATG 1560
Query 1553 AAATATATGTAT--GTCTAGCGTCATAAGTGGTATTTT 1588
|||||||| ||| || || ||||||||||||||||||
Sbjct 1561 AAATATATATATATGTATAACGTCATAAGTGGTATTTT 1598
> Ahg914725 jgi|Araly1|914725|Al_scaffold_0001_4979
Length=1203
Score = 1735 bits (939), Expect = 0.0
Identities = 1026/1067 (96%), Gaps = 9/1067 (1%)
Strand=Plus/Plus
Query 97 TTTCTGGAGCCGTGTGTGCATCGACTCTGGCAAGGAATGGCGTCTCCGTCACTATCTTCG 156
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 146 TTTCTGGAGCCGTGTGTGCATCGACTTTGGCAAGGAATGGCGTCTCCGTCACTATCTTCG 205
Query 157 ACTCGGGTCGTGGACCTGGTGGACGCATGTCTCAAAGAAGAGAGATTGGAGAAGATGGGA 216
| | || ||| | ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 206 A--C---TC-TGG---TCGTGGACGCATGTCTCAAAGGAGAGAGATTGGAGAAGATGGGA 256
Query 217 AGGAGTTGATGTTCGACCATGGAGCTCCATTTTTCTGTGTGAGCAACTCTGATGCCATGG 276
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 257 AGGAGTTGATGTTCGACCATGGAGCTCCATTTTTCTGTGTGGGCAACTCTGATGCAATGG 316
Query 277 CTCTTGTTCATGAGTGGGAATCCAGAGGTTTTGTTTCTGAATGGAAACAAGTTTTTGGGA 336
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 317 CTCTTGTTCATGAGTGGGAGTCCAGGGGTTTTGTTTCTGAATGGAAACAAGTTTTTGGGA 376
Query 337 GTTTTGATTGTGCCTCCAACAAGTTTCTTGGCATCCAACAGGAAGGGGATGCAAAGAAGT 396
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 GTTTCGATTATGCCTCCAACAAGTTTCTTGGCATCCAACAGGAAGGGGATGCAAAGAAGT 436
Query 397 ATGTGGGTGTTCCGGGCATGAACTCTATATCTAAGGCCTTGTGTAATGAGTCTGGTGTTA 456
|||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 437 ATGTGGGTGTTCCGGGCATGAACTCTATATCTAAGGCCTTGTGTCACGAGTCAGGTGTTA 496
Query 457 AGAGTATGTTTGGAACTGGTATTGCCAAGATGGAATGGTTGGAAGAAGAGATACCATGGT 516
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 497 AAAGTATGTTTGGAACTGGTATTGCCAAGCTGGAATGGTTGGAAGAAGAGATACCATGGT 556
Query 517 TGTTGACAGATTCAAAAGGAGAAAATTTGGGTCGTTTCGATGGAGTGGTTGCATCAGATA 576
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 557 TGTTGACAGATTCAAAAGGAGAAAATTTGGGTCGTTTCGATGGAGTTGTTGCATCAGATA 616
Query 577 AAAACATTGTTTCTCCAAGGTTTACTCAAGTAACTGGACTCCCACCGCCTCTGGACTTAA 636
|||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 617 AAAACATTGTTTCTCCCAGGTTTACTCAAGTAACCGGACTCTCACCGCCTCTGGACTTAA 676
Query 637 GTCTAGTCCCGGAGTTGGCGACTAAGCTGCAAAACATTCCTGTTCTACCATGCTTCTCTC 696
|||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 677 GTCTAGTCCCAGAGTTGGCGACTAAGCTGCAAAATATTCCTGTTCCACCATGCTTCTCTC 736
Query 697 TTATGCTAGCTTTCAAGGAGCCGTTGTCCTCGATACCAGTAAAGGGCTTATCTTTCAAGA 756
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 737 TTATGCTAGCTTTCAAGGAGCCGTTGTCTTCGATACCAGTAAAGGGCTTATCTTTCAAGA 796
Query 757 ATTCAGAGATTTTGAGCTGGGCTCACTGTGAAAGCACCAAGCCGGGACGGTCTACTGATA 816
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 797 ATTCAGAGATTTTGAGCTGGGCTCACTGTGATAGCACCAAGCCTGGACGGTCTACTGATA 856
Query 817 GTGAAAGGTGGATACTGCATTCTACTCCAGACTATGCCAACAGTGTTATTGCTAAGACCG 876
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 857 GTGAAAGATGGATACTGCATTCTACTCCAGACTATGCCAACAGTGTTATTGCCAAGACGG 916
Query 877 GCCTCCAAAAGCTATCGAGTGAAACACTAAACAAAATATCTGAAGAGATGTTCAAAGAGT 936
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 917 GCCTCCAAAAGCTATCCAGTGAAACACTAAACAAAATATCCGAAGAGATGTTCAAAGAGT 976
Query 937 TTCAGTGCTCAGGCCTTGTTAGTTCTCTCCCCTTTTTCATGAAAGCCCACAGATGGGGAA 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 TTCAGTGCTCAGGCCTTGTTAGTTCTCTCCCCTTTTTCATGAAAGCCCACAGATGGGGAA 1036
Query 997 GTGCGTTTCCAGCCAAAAGCATAGCCGTAGAGGAGAGGTGCCTTTGGGATAGAAACAGGA 1056
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GTGCATTTCCAGCCAAAAGCATAGCCGTAGAGGAGAGGTGCCTTTGGGATAGAAACAGGA 1096
Query 1057 ATCTAGCAATCTGTGGAGATTTCTGTGTCAGCCCAAATGTTGAAGGTGCAATTCTCAGTG 1116
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1097 ATCTAGCAATCTGTGGAGATTTCTGTGTCAGCCCAAATGTCGAAGGTGCCATTCTCAGTG 1156
Query 1117 GCTTAGCTGCAGCGTCAAAGCTTTTGCAGACTTCTAGCTGCTTATAG 1163
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 GCTTAGCTGCAGCGTCAAAGCTTTTGCAGACTTCTAGCTGCTTATAG 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59496962690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5