BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56010.2
Length=1393
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914738 jgi|Araly1|914738|Al_scaffold_0001_4992 1452 0.0
Ahg924120 jgi|Araly1|924120|scaffold_105401.1 527 9e-149
Ahg474667 jgi|Araly1|474667|fgenesh2_kg.1__4621__AT1G56000.1 220 2e-56
> Ahg914738 jgi|Araly1|914738|Al_scaffold_0001_4992
Length=957
Score = 1452 bits (786), Expect = 0.0
Identities = 916/976 (94%), Gaps = 20/976 (2%)
Strand=Plus/Plus
Query 138 ATGGAGACGGAAGAAGAGATGAAGGAAAGTAGTATAAGCATGGTGGAGGCAAAGTTGCCT 197
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGACGGAAGAAGAGATGAAGGAAAATAGTATAAGCATGGTGGAGGCAAAGTTGCCA 60
Query 198 CCGGGATTCAGATTTCACCCGAAGGACGATGAGCTTGTCTGCGATTACTTGATGAGACGA 257
||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||
Sbjct 61 CCGGGATTCAGATTTCACCCGAAGGACGACGAGCTTGTGTGCGATTACTTGATGAAACGA 120
Query 258 TCGCTTCACAATAATCATCGACCACCTCTTGTCCTGATCCAAGTCGATCTCAACAAGTGT 317
|||||||||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||
Sbjct 121 TCGCTTCACAATAATCCTCGACCACCTCTCGTCTTGATCCAAGTCGACCTCAACAAGTGT 180
Query 318 GAGCCTTGGGACATCCCAAAAATGGCATGCGTGGGAGGGAAGGATTGGTATTTCTACAGC 377
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GAGCCTTGGGACATCCCAAAAATGGCATGCGTGGGAGGGAAGGATTGGTATTTCTATAGC 240
Query 378 CAAAGAGACCGAAAATACGCGACGGGGCTGAGAACTAACCGAGCAACGGCCACCGGATAT 437
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 241 CAAAGAGACCGGAAATACGCGACGGGGCTGAGAACAAACCGAGCAACGGCCACTGGATAT 300
Query 438 TGGAAAGCCACCGGCAAAGACAGAACCATTCTAAGAAAGGGTAAGCTAGTTGGGATGAGG 497
|||||||| ||||||||||||||| ||||||| |||||||||||||| ||||||||||||
Sbjct 301 TGGAAAGCTACCGGCAAAGACAGAGCCATTCTGAGAAAGGGTAAGCTTGTTGGGATGAGG 360
Query 498 AAGACATTGGTTTTCTATCAAGGTCGAGCTCCTCGAGGCCGTAAAACCGATTGGGTCATG 557
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 AAGACATTGGTGTTCTATCAAGGTCGAGCTCCTCGAGGTCGTAAAACCGATTGGGTCATG 420
Query 558 CACGAATTCCGTCTCCAAGGATCTCATCATCCTCCCAATCATTCTCTGAGCTCTCCAAAG 617
|||||||||||||||||||||||| |||||||| || || | | | ||
Sbjct 421 CACGAATTCCGTCTCCAAGGATCTTATCATCCT-CC---CA-------A----T-C--AG 462
Query 618 GAAGACTGGGTCTTGTGTAGGGTATTCCATAAGAATACGGAAGGAGTTATATGTAGAGAC 677
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 463 GAAGACTGGGTCTTGTGTAGGGTGTTCCATAAGAATACAGAAGGAGTTATATGTAGAGAC 522
Query 678 AACATGGGAAGCTGTTTTGATGAGACAGCCTCTGCATCGCTTCCTCCACTGATGGATCCT 737
||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||||||
Sbjct 523 AACATGGGAAGCTGTTTCGATGAGACAGCCTCCGCATCTCTTCCTCCATTGATGGATCCT 582
Query 738 TACATCAACTTTGACCAAGAACCCTCTTCTTATCTCAGTGATGATCATCACTACATCATC 797
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 583 TACATCAACTTTGACCAAGAACCCTCTTCTTACCTCAGTGATGATCATCACTTCATCATC 642
Query 798 AATGAGCACGTACCCTGCTTCTCCAATTTGTCACAGAACCAAACCTTAAACTCGAACCTA 857
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 643 AATGAGCACGTACCCTGCTTCTCCAATTTGTCACAGAACCAAACCTTAAACTCAAACCTA 702
Query 858 ACCAACTCAGTCTCTGAACTCAAGATTCCATGCAAGAACCCTAACCCCTTGTTTACTGGT 917
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 703 ACCAACTCAGTCTCTGAACTCAAGATTCCATGCAAGAACCCTAACCCTTTGTTTACTGGT 762
Query 918 GGTTCAGCCTC-AGCCACGCTCACAGGCCTCGACTCATTCTGTTCTTCAGATCAGATGGT 976
|||||||| || ||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 763 GGTTCAGC-TCCAGCTACGCTCACAGGCCTCGACTCGTTCTGTTCTTCAGATCAGATGGT 821
Query 977 TCTCAGAGCTCTACTCAGTCAGCTCACTAAGATTGATGGAAGCCTCGGGCCTAAAGAATC 1036
||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||
Sbjct 822 TCTCAGAGCTCTACTCAGTCAGCTCACTAAGATCGATGGAAGCCTCGGGGCTAACGAATC 881
Query 1037 ACAGAGTTATGGAGAAGGTAGCTCGGAGAGCCTCCTGACCGACATCGGTATTCCAAGCAC 1096
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 882 ACAGAGTTATGGAGAAGGTAGCTCGGAGAGCCTGTTGACCGACATTGGTATTCCAAGCAG 941
Query 1097 TGTTTGGAATTGCTGA 1112
|| |||||||||||||
Sbjct 942 TGCTTGGAATTGCTGA 957
> Ahg924120 jgi|Araly1|924120|scaffold_105401.1
Length=649
Score = 527 bits (285), Expect = 9e-149
Identities = 325/344 (94%), Gaps = 3/344 (1%)
Strand=Plus/Plus
Query 792 ATCATCAATGAGCACGTACCCTGCTTCTCCAATTTGTCACAGAACCAAACCTTAAACTCG 851
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 306 ATCATCAATGAGCACGTACCCTGCTTCTCCAATTTGTCACAGAACCAAACCTTGAACTCA 365
Query 852 AACCTAACC---AACTCAGTCTCTGAACTCAAGATTCCATGCAAGAACCCTAACCCCTTG 908
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 AACCAAACCTTGAACTCAGTCTCTGAACTCAAGATTCCATGCAAGAACCCTAACCCCTTG 425
Query 909 TTTACTGGTGGTTCAGCCTCAGCCACGCTCACAGGCCTCGACTCATTCTGTTCTTCAGAT 968
|||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||
Sbjct 426 TTTACTGGTGGTTCAGCCCCAGCGACGCTCACAGGCCTCGACTCGTTCTGTTCTTCAGAT 485
Query 969 CAGATGGTTCTCAGAGCTCTACTCAGTCAGCTCACTAAGATTGATGGAAGCCTCGGGCCT 1028
||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||
Sbjct 486 CAGATGGTTCTCAGAGCTCTACTCAGTCAGCTCACTAAGATCGACGGAAGCCTCGGGGCT 545
Query 1029 AAAGAATCACAGAGTTATGGAGAAGGTAGCTCGGAGAGCCTCCTGACCGACATCGGTATT 1088
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||
Sbjct 546 AAAGAATCACAGAGTTATGGAGAAGGTAGCTCGGAGAGCCTGTTGACCGACATTGGTGTT 605
Query 1089 CCAAGCACTGTTTGGAATTGCTGATGATCGAGTGTAACGAGAGT 1132
||||||| || ||||||||||||||||||||||||||| |||||
Sbjct 606 CCAAGCAGTGCTTGGAATTGCTGATGATCGAGTGTAACCAGAGT 649
> Ahg474667 jgi|Araly1|474667|fgenesh2_kg.1__4621__AT1G56000.1
Length=1598
Score = 220 bits (119), Expect = 2e-56
Identities = 140/150 (93%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 1246 AAAATACCACTTATGACGCTAGAC--ATACATATATTTCATCGTAGTTCCATTTGTTTCA 1303
|||||||||||||||||| || || ||| ||||||||||||||||||||||||||||||
Sbjct 1598 AAAATACCACTTATGACGTTATACATATATATATATTTCATCGTAGTTCCATTTGTTTCA 1539
Query 1304 AGGTATTAAGGACCTCTAGAACAATTGATCAAAAAGATAATATGAAACATCACTACCTGT 1363
|||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1538 AGGTATTAGGGACCTCTAGAACGATTGATCAATAAGATAATATGAAACATCACTACCTGT 1479
Query 1364 GTACATGATGGGATAGGTGATTGAATAGCC 1393
| ||||||||||||||||||||| ||||||
Sbjct 1478 GGACATGATGGGATAGGTGATTGCATAGCC 1449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52069364915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5