BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56020.1
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474670 jgi|Araly1|474670|fgenesh2_kg.1__4624__AT1G56020.1 1620 0.0
> Ahg474670 jgi|Araly1|474670|fgenesh2_kg.1__4624__AT1G56020.1
Length=1318
Score = 1620 bits (877), Expect = 0.0
Identities = 1118/1226 (91%), Gaps = 50/1226 (4%)
Strand=Plus/Plus
Query 72 AATGGCTTCCGCTTGCGTTAAAAGTGCCGGTGTTTCGCCGGAGAAGTTCTCGTCGTACGG 131
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 36 AATGGCTTCCGCTTGCGTGAAAAGTGCCGGTGTTTCGCCGGAGAAGTTTTCGTCGTACGG 95
Query 132 ATGGACGAGCCCTCGGATGTCTTTAACCAGAGACGACAACAGACGCTCTTCCTCCGTTGA 191
||||||||||||||| |||||||||||| |||| ||||||| ||||||||||||||| ||
Sbjct 96 ATGGACGAGCCCTCGAATGTCTTTAACCCGAGAAGACAACACACGCTCTTCCTCCGTCGA 155
Query 192 CAAGCAACAATCTGACCCATTACCGGAAATCCAAGATCCAGTTGTGGATTTCGAGTTTTG 251
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 156 CAAGCAACAATCTGACCCATCACCGGAAAACCAAGATCCAGTTGTGGATTTCGAGTTTTG 215
Query 252 CCTTGAGGATCCGGTCACAATGCTCTCTGCCGATGAGCTCTTCTCCGACGGAAAGCTCGT 311
|| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 216 TCTCGAAGATCCGGTCACAATGCTCTCCGCCGATGAGCTCTTCTCCGACGGAAAGCTCGT 275
Query 312 ACCTTTGAAGTTCTCTGGCCCTAAgacgacgacgacgacgacgTCAACGACAGTCAACAC 371
|||||||||||||||||| || | | | | ||||||| ||| |||| |||
Sbjct 276 ACCTTTGAAGTTCTCTGG-CC-----C--C-A--A-GACGACG---ACG---GTCAGCAC 317
Query 372 AACTACCACCGAACCAAGAGGATCACCAGAGGTTCTGAAATCATGCCGGAGACTTGAGAT 431
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 318 AACTACCACCGAACCAAGAGGATCACCGGAGGTTCTTAAATCTTGCCGGAGACTTGAGAT 377
Query 432 GGAGATCTCTGACCTCTTCTCTCCTAAAGCTCCTCGTTGTACGACTCGATGGAGAGAGCT 491
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 378 GGAGATCTCTGACCTCTTCTCTCCTAAAGCTCCTCGTTGTACGACTCGATGGAAAGAGCT 437
Query 492 TTTAGGTCTCAAGAGACTCGTCAACGCCAAGGAACAAGAAGAATCTATTAAAGCTTCTTC 551
|||||||||||||||||| |||||| |||| | | | |||||||| |||||||||||||
Sbjct 438 TTTAGGTCTCAAGAGACTTGTCAACTCCAA--AGC-ACAAGAATCTGTTAAAGCTTCTTC 494
Query 552 TTCTTCTTCATCCACAAACCCCAAAACGTCATCGTTTAAGCAATTTCTTCACCGGGGATC 611
||||||||| |||||||| | |||||||| |||||||||||||||||||||||||||||
Sbjct 495 ATCTTCTTCACCCACAAACGCAAAAACGTCGTCGTTTAAGCAATTTCTTCACCGGGGATC 554
Query 612 TAAATCTT------CTA------CCG---CCGCATCGTCGCCGTTGCAAAAAGAATCAGA 656
|||||||| | | ||| |||||||||| ||||||||||||||||||||
Sbjct 555 TAAATCTTCCGCCGCCACCGCCGCCGCCACCGCATCGTCTCCGTTGCAAAAAGAATCAGA 614
Query 657 TATCTCCGAATCAATCTCAGTCGCATCTTCACGTCTCTCACTCTCTTCATCGTCTTCCTC 716
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 615 TATCTCCGAATCAATCTCAATCGCATCTTCACGTCTCTCACTCTCTTCATCGTCTTCCTC 674
Query 717 TAGCCACGAGATCGATGATCTTCCAAGACTCTCGCTTGACCTCGATAAACCAAGTGCGAA 776
|||||||||||||||||| |||||||||||||||||||| |||||||||||||| | ||
Sbjct 675 TAGCCACGAGATCGATGACCTTCCAAGACTCTCGCTTGATATCGATAAACCAAGTCCTAA 734
Query 777 TCCCTTTGCTCCGTCGCGGACTCATTCACGAAACCTTAACCAACCAAGAATCAGATTAGC 836
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 735 TCCCTTTGCTCCGTCGCGGACTCACTCACGAAACCTTAACCAACCAAGAATCAGATTAGC 794
Query 837 CAAACCAAGACGG-A-A-TCATCCACCGTCGACGCCTTCCGTTGACGGATCATCATCATC 893
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 CAAACCAAGACGGCATAATCATCCACCGTCGACGCCTTCCGTTGACGGATCATCATCATC 854
Query 894 GTCGGCGTGTATCGAATCTCGGGGTCTCACCGTGACGGCGGATAGTCCGAGACTCAACGC 953
|||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 855 ATCGGCGAACATCGAATCTCGAGGACTCACCGTGACGGCGGATAGTCCGAGACTTAACGC 914
Query 954 CTCCGGTAAAATCGTGTTTCATGGACTTGAAAGAAGCTCGAGTAGTCCCGGAAGCTTCAC 1013
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 915 CTCCGGTAAAATCGTGTTTCACGGACTTGAAAGAAGCTCGAGTAGTCCCGGAAGCTTCAC 974
Query 1014 CGGTGGACCTAGAATGAAGCAGCACCATGGAATGCCTAGATCGTACTCTGCTAATGTCAG 1073
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 975 CGGTGGACCTAGAATGAAGCAGTACCATGGAATGCCGAGATCGTACTCTGCTAATGTCAG 1034
Query 1074 AATCACGCCGGTGCTTAATGTTCCGGTTTGTTC-TCTGAAATCAGGGCTTTTCTTTGGCC 1132
||||||||||||||| ||||||||||||||||| | | ||||||||||||||||| || |
Sbjct 1035 AATCACGCCGGTGCTCAATGTTCCGGTTTGTTCGT-TAAAATCAGGGCTTTTCTTCGGTC 1093
Query 1133 AGCTTTTCTCATCTTCGTCTTCATC---GTCTTC-T--TC-T-T-CTCCGTCTCCGGGGA 1183
|| |||||||||| ||||| ||||| |||||| | || | | |||||||||||||||
Sbjct 1094 AGATTTTCTCATCGTCGTCGTCATCTTCGTCTTCATCGTCATCTTCTCCGTCTCCGGGGA 1153
Query 1184 ACAAATCTCAGTTACAGAGCAACGGAAGCAAGAACCGGATTAATCGAACCAGGCTTGAAC 1243
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1154 ACAAATCTCAGTTACAGAGCAACGGCGGCAAGAACCGGATTAATCGAACCAGGCTTGAAC 1213
Query 1244 CGAAATTCGAACAATTAGAGAAGTAA 1269
| ||||||||||||||||| ||||||
Sbjct 1214 CAAAATTCGAACAATTAGAAAAGTAA 1239
Score = 89.8 bits (48), Expect = 5e-17
Identities = 58/63 (92%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 1335 GGGTCGTTTTGTAAACTGAAGTTTTCTTTGGGGGCTGAATATGTAAATACGGTTTAACAA 1394
|||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1256 GGGTTGTTTTGTAAACTGAAGTTAAATTTGGGGACTGAATATGTAAATACGGTTTAACAA 1315
Query 1395 TTT 1397
|||
Sbjct 1316 TTT 1318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52488357610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5