BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56030.1
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914740 jgi|Araly1|914740|Al_scaffold_0001_4994 556 9e-158
Ahg924140 jgi|Araly1|924140|scaffold_105421.1 484 4e-136
Ahg924139 jgi|Araly1|924139|scaffold_105420.1 294 8e-79
> Ahg914740 jgi|Araly1|914740|Al_scaffold_0001_4994
Length=1215
Score = 556 bits (301), Expect = 9e-158
Identities = 398/443 (90%), Gaps = 14/443 (3%)
Strand=Plus/Plus
Query 96 GAGACAGTTTTTGCGTAATTGTCAAATGGAGCTTGAAAACTTGTCCCTCAAAACAGAGCT 155
|||||||||||||||||| || ||||| |||||||||||||| ||| || ||||||| ||
Sbjct 90 GAGACAGTTTTTGCGTAAATGCCAAATAGAGCTTGAAAACTTCTCCATCGAAACAGATCT 149
Query 156 ACCACTTGTTTATGTTGATGAATCAAAATATTGGAGATTCATCAAAACTGTTAGGGTTTT 215
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 150 TCCACTTGTTTATGTTGATGAATCAAATTATTGGAGATTCATCAAAACTGTTAGGGTTTT 209
Query 216 GGCTGAGGTTTTTAACAATATGAAGA-CTACTCGAACAACACGGAAAAGTATCATTCAGG 274
|||||| ||||| || |||||||||| | ||| ||||||||||||||||||| |||||||
Sbjct 210 GGCTGACGTTTTCAAGAATATGAAGATC-ACTGGAACAACACGGAAAAGTATAATTCAGG 268
Query 275 TGCTTATGAATCCCATCTTACCATCTGAGAGAAGCACCGATGCAATGAATTTATTTCTGT 334
|||| |||||||||||||| ||| ||||||| ||||| ||||||||||| ||||||||||
Sbjct 269 TGCTGATGAATCCCATCTTGCCACCTGAGAGGAGCACTGATGCAATGAAATTATTTCTGT 328
Query 335 CCACCATTGAAAAACTAGCTGACTTGCAGTTTTCTGATGAAGATTTCAATCAGCTTTTTG 394
||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 329 CCACCATTGGAAAACTAGCTGACTTACAGTTTTCTGATGAAAATTTCAATCAGCTTTTTT 388
Query 395 TAAGTTCTCGGCTTGATTTACAG--T--T---G-G----AGAATAAGTACAATGACAAAG 442
|||||||||||||| |||||||| | | | | ||||||||||||||||| |||
Sbjct 389 TAAGTTCTCGGCTTAATTTACAGGCTACTATAGAGTTGGAGAATAAGTACAATGACGAAG 448
Query 443 TCGAAGTGAAGCTTAGGAAAGAAGCAGAAGATGCACTTGCTAGAAAAATTAAGGAAGTAG 502
||||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 449 TCGAAGTCAATCTTAGGAAGGAAGCAGAAGATGCACTTGCTAGAAAGTTTAAGGAAGTAG 508
Query 503 TAGATTTGACGGAACGGTTACTT 525
|||||||||||||||||||||||
Sbjct 509 TAGATTTGACGGAACGGTTACTT 531
Score = 209 bits (113), Expect = 3e-53
Identities = 156/176 (89%), Gaps = 5/176 (3%)
Strand=Plus/Plus
Query 937 ACA-GATGTCATGAAAAATCCACACATGGCTGCTGATGGATTCACATACGAATTAGAAGC 995
||| || |||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 ACAGGAGGTCATGCAAGATCCACACATGGCTGCTGATGGATTCACATACGAATTAGAAGC 1097
Query 996 TATTCAAAAAT-GGATTAACACAGGTCAC-AGGACGTCGCCGATGACTAATCTCAAACTT 1053
|||| || ||| ||||||||||||||||| || || || |||||||| |||||| |||
Sbjct 1098 TATT-AAGAATTGGATTAACACAGGTCACCAG-ACCTCACCGATGACAAATCTCCCGCTT 1155
Query 1054 TCACATTTCAGCTTTTTCCCTAACCGAGCTCTCCGCTCTGCAATTGAGGAGTTGGG 1109
||||| ||| |||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1156 CCACATCTCAACTTTGTCCCTAACCGAGCTCTCCGCTCTGCCATTGAGGAGTTGGG 1211
> Ahg924140 jgi|Araly1|924140|scaffold_105421.1
Length=1357
Score = 484 bits (262), Expect = 4e-136
Identities = 456/544 (84%), Gaps = 35/544 (6%)
Strand=Plus/Plus
Query 1 ATGGTGAAAAACTCCTATGTATTATTCGCTCGTTTATGCGTAGAGC---TT------C-- 49
|||||| |||| |||||||| ||||||||||| ||||||||||||| || |
Sbjct 75 ATGGTGGAAAATTCCTATGTCTTATTCGCTCGCTTATGCGTAGAGCTTTTTCACGAGCTT 134
Query 50 CC-CCTCTTCCATCAGATGAATCTCACGGCGAAATTACAACTGTAGAGAGACAGTTTTTG 108
|| ||||||||||||||||||||||||||||| ||||||||| | ||||||| |||||||
Sbjct 135 CCTCCTCTTCCATCAGATGAATCTCACGGCGATATTACAACTTTTGAGAGACTGTTTTTG 194
Query 109 CGTAATTGTCAAATGGAGCTTGAAAACTTGTCCCTCAAAACAGAGC---TACCACTTGTT 165
||||| || | ||| ||||||||||||| |||| ||||||||| | |||||||||||
Sbjct 195 CGTAAATGCCGAATTGAGCTTGAAAACTCATCCCCCAAAACAGAACATTTACCACTTGTT 254
Query 166 TATGTTGATGAATCAAAATATTGGAGATTCATCAAAACTGTTAGGGTTTTGGCTGAGGTT 225
||||||||||||||||| | || |||||||||||||| || |||||||| ||||| |||
Sbjct 255 TATGTTGATGAATCAAACTGTTACAGATTCATCAAAACCGTAAGGGTTTTAGCTGAAGTT 314
Query 226 TTTAACAATATGAAGACT-ACTCG-AACAACACGGAAAAGTATCATTCAGGTGCTTATGA 283
|| || |||| ||||| | ||| | |||||| || ||||| || ||||||||||||||||
Sbjct 315 TTCAAGAATAAGAAGA-TCACT-GAAACAACCCGTAAAAGCATAATTCAGGTGCTTATGA 372
Query 284 ATCCCATCTTACCATCTGAGAGAAGCACCGATGCAATGAATTTATTTCTGTCCACCATTG 343
|||||||||||||| ||||||| | ||||||||| |||||||||||||||||||||||||
Sbjct 373 ATCCCATCTTACCACCTGAGAGGATCACCGATGCGATGAATTTATTTCTGTCCACCATTG 432
Query 344 AAAAACTAGCTGACTTGCAGTTTTCTGATGAAGATTTCAATCAGCT-TTTTGTAAGTTCT 402
||||||||||||||| || |||||||||||| ||||||||||||| || | |||||||
Sbjct 433 GAAAACTAGCTGACTTCCATTTTTCTGATGAAAATTTCAATCAGCTAATTCG-AAGTTCT 491
Query 403 C-GGCTTGATTTACAGTTGGAGAATAAGTACAATGACAAAGTCGAAGTGAAGCTTAGGAA 461
| ||| || || |||| || | || | ||| |||| | |||||| |||||||||||
Sbjct 492 CGGGC-TG---TAGAGTT--AG-A-GAG-A-AATTACAATGACGAAGTAAAGCTTAGGAA 541
Query 462 AGAAGCAGAAGATGCACTTGCTAGAAAAATTAAGGAAGTAGTAGATTTGACGGAACGGTT 521
||||||||||||||||||||||||||||| || ||||| | |||| || |||||| ||
Sbjct 542 AGAAGCAGAAGATGCACTTGCTAGAAAAAAGAAAGAAGTGG-AGAT--GATGGAACGATT 598
Query 522 ACTT 525
||||
Sbjct 599 ACTT 602
> Ahg924139 jgi|Araly1|924139|scaffold_105420.1
Length=1103
Score = 294 bits (159), Expect = 8e-79
Identities = 346/429 (81%), Gaps = 41/429 (10%)
Strand=Plus/Plus
Query 522 ACTTCAAGTCGAAGCCTTGGAGCACAAACATAAAGCAAAGTTGCAGCTTAGGACAGAAAC 581
||||||||| |||||||||||||||||||| ||||| ||||||||| ||||||||||||
Sbjct 452 ACTTCAAGTTAAAGCCTTGGAGCACAAACATGAAGCAGAGTTGCAGCGTAGGACAGAAAC 511
Query 582 TGAAACCGCGGTAGCCATAGAACGTGATTATATGCGTTGGAAGGCTGAA-ATTTTCGAGA 640
||||| |||| ||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 512 TGAAATCGCGTTAGCCATAGAACGTGATTATATGCGTTGGAAGGCTGAGTATTT-CGAGA 570
Query 641 GCGAATTCAAC-AATCAATTGGTACTCAGGAGAGAATCAGAAATTGCACTTGATAAAGAA 699
|||||| |||| || || ||| || |||||||||| || | | | |||
Sbjct 571 GCGAATACAACGAAG-AACTGGCACGCAGGAGAGAA---GA-----C----G-T---GAA 613
Query 700 AGGAAAGAGCTGGAGGGTATTAAA--AATCTGCTTGAAACTTGTT-TCACAGGACAAAAG 756
|| | ||||||| ||||| || |||| ||||||| || | | || | |||||
Sbjct 614 AGC---GT--TGGAGGGG-TTAAAGCAA-CTGCATGAAACT-GTAATAATAGAAAAAAAG 665
Query 757 AACCTGAAATCGCAGGTGATAACATGGAAAGACAAGTACGACCAAGGGTCAAGTATTAGG 816
|||||||| || ||||||||||||||| |||||||||||||||||| ||||| ||||||
Sbjct 666 AACCTGAATTCACAGGTGATAACATGGCAAGACAAGTACGACCAAGAGTCAATTATTAGA 725
Query 817 AAAGAAAA-AGAGG-TTGCTCTTTCTACTAAGAA-ACTAGAACTCGAGATTTTCAAAC-A 872
||| |||| ||||| || | ||||||||||| || ||||| ||| ||||| ||||| |
Sbjct 726 AAA-AAAACAGAGGATT-CGCTTTCTACTAA-AATACTAGCGCTCAAGATTGTCAAAGGA 782
Query 873 GCTAGCCGGATCGTACAAACAAGATGCAGATGCGATGCGACAAGAGAGAG-ACAATGCTC 931
| | || ||||||||||||||| ||||||| ||||||||||||| || |||||||||
Sbjct 783 ATT-GTCGAATCGTACAAACAAGAAACAGATGCAATGCGACAAGAGA-AGGACAATGCTC 840
Query 932 TCAAAACAG 940
| |||||||
Sbjct 841 TTAAAACAG 849
Score = 211 bits (114), Expect = 8e-54
Identities = 154/173 (89%), Gaps = 3/173 (2%)
Strand=Plus/Plus
Query 937 ACA-GATGTCATGAAAAATCCACACATGGCTGCTGATGGATTCACATACGAATTAGAAGC 995
||| ||||||||| || |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 905 ACAGGATGTCATGGAAGATCCACACATGGCTGCCGATGGATTCACATACGAATTAGAAGC 964
Query 996 TATTCAA-AAATGGATTAACACAGGTCACAGGACGTCGCCGATGACTAATCTCAAACTTT 1054
|||| || |||||||||| ||||||||||| ||||||||||||||| ||||||||||| |
Sbjct 965 TATT-AAGAAATGGATTAGCACAGGTCACAAGACGTCGCCGATGACAAATCTCAAACTGT 1023
Query 1055 CACATTTCAGCTTTTTCCCTAACCGAGCTCTCCGCTCTGCAATTGAGGAGTTG 1107
||||| ||| | || |||||||||| |||||| |||||| ||| ||||||||
Sbjct 1024 CACATCTCAACCTTGTCCCTAACCGTGCTCTCTACTCTGCGATTCAGGAGTTG 1076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41592102447
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5