BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G56030.1 Length=1116 Score E Sequences producing significant alignments: (Bits) Value Ahg914740 jgi|Araly1|914740|Al_scaffold_0001_4994 556 9e-158 Ahg924140 jgi|Araly1|924140|scaffold_105421.1 484 4e-136 Ahg924139 jgi|Araly1|924139|scaffold_105420.1 294 8e-79 > Ahg914740 jgi|Araly1|914740|Al_scaffold_0001_4994 Length=1215 Score = 556 bits (301), Expect = 9e-158 Identities = 398/443 (90%), Gaps = 14/443 (3%) Strand=Plus/Plus Query 96 GAGACAGTTTTTGCGTAATTGTCAAATGGAGCTTGAAAACTTGTCCCTCAAAACAGAGCT 155 |||||||||||||||||| || ||||| |||||||||||||| ||| || ||||||| || Sbjct 90 GAGACAGTTTTTGCGTAAATGCCAAATAGAGCTTGAAAACTTCTCCATCGAAACAGATCT 149 Query 156 ACCACTTGTTTATGTTGATGAATCAAAATATTGGAGATTCATCAAAACTGTTAGGGTTTT 215 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 150 TCCACTTGTTTATGTTGATGAATCAAATTATTGGAGATTCATCAAAACTGTTAGGGTTTT 209 Query 216 GGCTGAGGTTTTTAACAATATGAAGA-CTACTCGAACAACACGGAAAAGTATCATTCAGG 274 |||||| ||||| || |||||||||| | ||| ||||||||||||||||||| ||||||| Sbjct 210 GGCTGACGTTTTCAAGAATATGAAGATC-ACTGGAACAACACGGAAAAGTATAATTCAGG 268 Query 275 TGCTTATGAATCCCATCTTACCATCTGAGAGAAGCACCGATGCAATGAATTTATTTCTGT 334 |||| |||||||||||||| ||| ||||||| ||||| ||||||||||| |||||||||| Sbjct 269 TGCTGATGAATCCCATCTTGCCACCTGAGAGGAGCACTGATGCAATGAAATTATTTCTGT 328 Query 335 CCACCATTGAAAAACTAGCTGACTTGCAGTTTTCTGATGAAGATTTCAATCAGCTTTTTG 394 ||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 329 CCACCATTGGAAAACTAGCTGACTTACAGTTTTCTGATGAAAATTTCAATCAGCTTTTTT 388 Query 395 TAAGTTCTCGGCTTGATTTACAG--T--T---G-G----AGAATAAGTACAATGACAAAG 442 |||||||||||||| |||||||| | | | | ||||||||||||||||| ||| Sbjct 389 TAAGTTCTCGGCTTAATTTACAGGCTACTATAGAGTTGGAGAATAAGTACAATGACGAAG 448 Query 443 TCGAAGTGAAGCTTAGGAAAGAAGCAGAAGATGCACTTGCTAGAAAAATTAAGGAAGTAG 502 ||||||| || |||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 449 TCGAAGTCAATCTTAGGAAGGAAGCAGAAGATGCACTTGCTAGAAAGTTTAAGGAAGTAG 508 Query 503 TAGATTTGACGGAACGGTTACTT 525 ||||||||||||||||||||||| Sbjct 509 TAGATTTGACGGAACGGTTACTT 531 Score = 209 bits (113), Expect = 3e-53 Identities = 156/176 (89%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 937 ACA-GATGTCATGAAAAATCCACACATGGCTGCTGATGGATTCACATACGAATTAGAAGC 995 ||| || |||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1038 ACAGGAGGTCATGCAAGATCCACACATGGCTGCTGATGGATTCACATACGAATTAGAAGC 1097 Query 996 TATTCAAAAAT-GGATTAACACAGGTCAC-AGGACGTCGCCGATGACTAATCTCAAACTT 1053 |||| || ||| ||||||||||||||||| || || || |||||||| |||||| ||| Sbjct 1098 TATT-AAGAATTGGATTAACACAGGTCACCAG-ACCTCACCGATGACAAATCTCCCGCTT 1155 Query 1054 TCACATTTCAGCTTTTTCCCTAACCGAGCTCTCCGCTCTGCAATTGAGGAGTTGGG 1109 ||||| ||| |||| ||||||||||||||||||||||||| |||||||||||||| Sbjct 1156 CCACATCTCAACTTTGTCCCTAACCGAGCTCTCCGCTCTGCCATTGAGGAGTTGGG 1211 > Ahg924140 jgi|Araly1|924140|scaffold_105421.1 Length=1357 Score = 484 bits (262), Expect = 4e-136 Identities = 456/544 (84%), Gaps = 35/544 (6%) Strand=Plus/Plus Query 1 ATGGTGAAAAACTCCTATGTATTATTCGCTCGTTTATGCGTAGAGC---TT------C-- 49 |||||| |||| |||||||| ||||||||||| ||||||||||||| || | Sbjct 75 ATGGTGGAAAATTCCTATGTCTTATTCGCTCGCTTATGCGTAGAGCTTTTTCACGAGCTT 134 Query 50 CC-CCTCTTCCATCAGATGAATCTCACGGCGAAATTACAACTGTAGAGAGACAGTTTTTG 108 || ||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||||| Sbjct 135 CCTCCTCTTCCATCAGATGAATCTCACGGCGATATTACAACTTTTGAGAGACTGTTTTTG 194 Query 109 CGTAATTGTCAAATGGAGCTTGAAAACTTGTCCCTCAAAACAGAGC---TACCACTTGTT 165 ||||| || | ||| ||||||||||||| |||| ||||||||| | ||||||||||| Sbjct 195 CGTAAATGCCGAATTGAGCTTGAAAACTCATCCCCCAAAACAGAACATTTACCACTTGTT 254 Query 166 TATGTTGATGAATCAAAATATTGGAGATTCATCAAAACTGTTAGGGTTTTGGCTGAGGTT 225 ||||||||||||||||| | || |||||||||||||| || |||||||| ||||| ||| Sbjct 255 TATGTTGATGAATCAAACTGTTACAGATTCATCAAAACCGTAAGGGTTTTAGCTGAAGTT 314 Query 226 TTTAACAATATGAAGACT-ACTCG-AACAACACGGAAAAGTATCATTCAGGTGCTTATGA 283 || || |||| ||||| | ||| | |||||| || ||||| || |||||||||||||||| Sbjct 315 TTCAAGAATAAGAAGA-TCACT-GAAACAACCCGTAAAAGCATAATTCAGGTGCTTATGA 372 Query 284 ATCCCATCTTACCATCTGAGAGAAGCACCGATGCAATGAATTTATTTCTGTCCACCATTG 343 |||||||||||||| ||||||| | ||||||||| ||||||||||||||||||||||||| Sbjct 373 ATCCCATCTTACCACCTGAGAGGATCACCGATGCGATGAATTTATTTCTGTCCACCATTG 432 Query 344 AAAAACTAGCTGACTTGCAGTTTTCTGATGAAGATTTCAATCAGCT-TTTTGTAAGTTCT 402 ||||||||||||||| || |||||||||||| ||||||||||||| || | ||||||| Sbjct 433 GAAAACTAGCTGACTTCCATTTTTCTGATGAAAATTTCAATCAGCTAATTCG-AAGTTCT 491 Query 403 C-GGCTTGATTTACAGTTGGAGAATAAGTACAATGACAAAGTCGAAGTGAAGCTTAGGAA 461 | ||| || || |||| || | || | ||| |||| | |||||| ||||||||||| Sbjct 492 CGGGC-TG---TAGAGTT--AG-A-GAG-A-AATTACAATGACGAAGTAAAGCTTAGGAA 541 Query 462 AGAAGCAGAAGATGCACTTGCTAGAAAAATTAAGGAAGTAGTAGATTTGACGGAACGGTT 521 ||||||||||||||||||||||||||||| || ||||| | |||| || |||||| || Sbjct 542 AGAAGCAGAAGATGCACTTGCTAGAAAAAAGAAAGAAGTGG-AGAT--GATGGAACGATT 598 Query 522 ACTT 525 |||| Sbjct 599 ACTT 602 > Ahg924139 jgi|Araly1|924139|scaffold_105420.1 Length=1103 Score = 294 bits (159), Expect = 8e-79 Identities = 346/429 (81%), Gaps = 41/429 (10%) Strand=Plus/Plus Query 522 ACTTCAAGTCGAAGCCTTGGAGCACAAACATAAAGCAAAGTTGCAGCTTAGGACAGAAAC 581 ||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||| Sbjct 452 ACTTCAAGTTAAAGCCTTGGAGCACAAACATGAAGCAGAGTTGCAGCGTAGGACAGAAAC 511 Query 582 TGAAACCGCGGTAGCCATAGAACGTGATTATATGCGTTGGAAGGCTGAA-ATTTTCGAGA 640 ||||| |||| ||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 512 TGAAATCGCGTTAGCCATAGAACGTGATTATATGCGTTGGAAGGCTGAGTATTT-CGAGA 570 Query 641 GCGAATTCAAC-AATCAATTGGTACTCAGGAGAGAATCAGAAATTGCACTTGATAAAGAA 699 |||||| |||| || || ||| || |||||||||| || | | | ||| Sbjct 571 GCGAATACAACGAAG-AACTGGCACGCAGGAGAGAA---GA-----C----G-T---GAA 613 Query 700 AGGAAAGAGCTGGAGGGTATTAAA--AATCTGCTTGAAACTTGTT-TCACAGGACAAAAG 756 || | ||||||| ||||| || |||| ||||||| || | | || | ||||| Sbjct 614 AGC---GT--TGGAGGGG-TTAAAGCAA-CTGCATGAAACT-GTAATAATAGAAAAAAAG 665 Query 757 AACCTGAAATCGCAGGTGATAACATGGAAAGACAAGTACGACCAAGGGTCAAGTATTAGG 816 |||||||| || ||||||||||||||| |||||||||||||||||| ||||| |||||| Sbjct 666 AACCTGAATTCACAGGTGATAACATGGCAAGACAAGTACGACCAAGAGTCAATTATTAGA 725 Query 817 AAAGAAAA-AGAGG-TTGCTCTTTCTACTAAGAA-ACTAGAACTCGAGATTTTCAAAC-A 872 ||| |||| ||||| || | ||||||||||| || ||||| ||| ||||| ||||| | Sbjct 726 AAA-AAAACAGAGGATT-CGCTTTCTACTAA-AATACTAGCGCTCAAGATTGTCAAAGGA 782 Query 873 GCTAGCCGGATCGTACAAACAAGATGCAGATGCGATGCGACAAGAGAGAG-ACAATGCTC 931 | | || ||||||||||||||| ||||||| ||||||||||||| || ||||||||| Sbjct 783 ATT-GTCGAATCGTACAAACAAGAAACAGATGCAATGCGACAAGAGA-AGGACAATGCTC 840 Query 932 TCAAAACAG 940 | ||||||| Sbjct 841 TTAAAACAG 849 Score = 211 bits (114), Expect = 8e-54 Identities = 154/173 (89%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 937 ACA-GATGTCATGAAAAATCCACACATGGCTGCTGATGGATTCACATACGAATTAGAAGC 995 ||| ||||||||| || |||||||||||||||| |||||||||||||||||||||||||| Sbjct 905 ACAGGATGTCATGGAAGATCCACACATGGCTGCCGATGGATTCACATACGAATTAGAAGC 964 Query 996 TATTCAA-AAATGGATTAACACAGGTCACAGGACGTCGCCGATGACTAATCTCAAACTTT 1054 |||| || |||||||||| ||||||||||| ||||||||||||||| ||||||||||| | Sbjct 965 TATT-AAGAAATGGATTAGCACAGGTCACAAGACGTCGCCGATGACAAATCTCAAACTGT 1023 Query 1055 CACATTTCAGCTTTTTCCCTAACCGAGCTCTCCGCTCTGCAATTGAGGAGTTG 1107 ||||| ||| | || |||||||||| |||||| |||||| ||| |||||||| Sbjct 1024 CACATCTCAACCTTGTCCCTAACCGTGCTCTCTACTCTGCGATTCAGGAGTTG 1076 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41592102447 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5