BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56040.1
Length=1458
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924140 jgi|Araly1|924140|scaffold_105421.1 1927 0.0
Ahg914740 jgi|Araly1|914740|Al_scaffold_0001_4994 424 1e-117
Ahg924139 jgi|Araly1|924139|scaffold_105420.1 224 1e-57
> Ahg924140 jgi|Araly1|924140|scaffold_105421.1
Length=1357
Score = 1927 bits (1043), Expect = 0.0
Identities = 1218/1302 (94%), Gaps = 14/1302 (1%)
Strand=Plus/Plus
Query 164 AGTCTCTAGTGTCTTGCGTTTTCGATATGGCAATGGTGGAAAACTCCTATGTCTTATTCG 223
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 43 AGTCTCTAGTGTCTTGCATTTTCGATATGGCAATGGTGGAAAATTCCTATGTCTTATTCG 102
Query 224 CTCGTTTATGCGTAGAGCTTTTTCACGAGCTTCCTCCACTTCCATCAGATGAATCTCACG 283
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 103 CTCGCTTATGCGTAGAGCTTTTTCACGAGCTTCCTCCTCTTCCATCAGATGAATCTCACG 162
Query 284 GCGATATTACAACTTTTGAGAGACTGTTCTTGCGCAAATGCAGAATTGAGCTTGAAAACG 343
|||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||
Sbjct 163 GCGATATTACAACTTTTGAGAGACTGTTTTTGCGTAAATGCCGAATTGAGCTTGAAAACT 222
Query 344 CATCCCCTAAAACAGAACATTTACCACTTGTTTATGTTGATGAAACAAACTATTACAGAT 403
||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 223 CATCCCCCAAAACAGAACATTTACCACTTGTTTATGTTGATGAATCAAACTGTTACAGAT 282
Query 404 TCATCAAAACCGTAAGGGTTTTAGCTGAAGTTTAT-AAGAAT-AGCAAGATCACAGAAAC 461
||||||||||||||||||||||||||||||||| | |||||| || |||||||| |||||
Sbjct 283 TCATCAAAACCGTAAGGGTTTTAGCTGAAGTTT-TCAAGAATAAG-AAGATCACTGAAAC 340
Query 462 AACCCGGAAAAGTATGATTCAGGTGCTTATGAATCCCATCTTACCACCTGAGAGGATTAC 521
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 341 AACCCGTAAAAGCATAATTCAGGTGCTTATGAATCCCATCTTACCACCTGAGAGGATCAC 400
Query 522 CGATGCGATGAATTTATTTCGGTCCATCATTGGAAAACTAGCTGACTTCCATTTTTCTGA 581
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 401 CGATGCGATGAATTTATTTCTGTCCACCATTGGAAAACTAGCTGACTTCCATTTTTCTGA 460
Query 582 TGAAAAATTCAATCAGCTAGTTCGTAGTTCTCGGG-TAGTAGAGTTGGAGGGAAATTACA 640
|||||| |||||||||||| |||| |||||||||| | |||||||| ||| |||||||||
Sbjct 461 TGAAAATTTCAATCAGCTAATTCGAAGTTCTCGGGCT-GTAGAGTTAGAGAGAAATTACA 519
Query 641 ATGAAGAAGTAAAGCTTAGGAAAGAAGCAGAAGATGCACTTGCTATG-AAAAAGGAAGAT 699
|||| |||||||||||||||||||||||||||||||||||||||| | |||||| ||||
Sbjct 520 ATGACGAAGTAAAGCTTAGGAAAGAAGCAGAAGATGCACTTGCTA-GAAAAAAGAAAGAA 578
Query 700 GTAGAGATGATGGAACAG-TTGCTTGAGTCTTACAAGGAAGAACAAGGTAAATTGCAACT 758
|| ||||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 579 GTGGAGATGATGGAAC-GATTACTTGAGTCTTACAAGGAAGAACAAGGTAAATTGCAACT 637
Query 759 ACAAGCTAAAGCCTTGGAGCACAAGCTTGAAGCAGAGTTGAGGCATAGGAAAGAAACAGA 818
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 638 TCAAGCTAAAGCCTTGGAGCACAAGCATGAAGCAGAGTTGAGGCATAGGAAAGAAACTGA 697
Query 819 AACCTTGCTTGCCATAGAACGGGATAGGATAGAGAAGGTAAAGATTCAACTGGAAACTGT 878
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 698 AACCTTGCTTGCCATAGAACGGGAGAGGTTAGAGAAGGTAAAGATTCAACTGGAAACTGT 757
Query 879 TGAAAATGAAATTGATAATACGCGTTTGAAGGCTGAGGAGTTTGAAAGAAAGTACGAGGG 938
|||||||||| ||| ||||||||||||||||| | ||||| ||||| |||||||||||
Sbjct 758 TGAAAATGAACGCGATGATACGCGTTTGAAGGCTAAAGAGTTCGAAAGCAAGTACGAGGG 817
Query 939 TGAGATGATTCTCAGGAGAGAATCAGAGATTGCGCTGGagaaagaaaagaaagagttgga 998
||||||||||||||||| || |||||||| ||||||||| ||||||| ||||||||||||
Sbjct 818 TGAGATGATTCTCAGGATAGGATCAGAGAGTGCGCTGGATAAAGAAAGGAAAGAGTTGGA 877
Query 999 agaagtaaagctaaagcttgaaacctacgaaagagagcaagaGAATCTGTCCTCAGAGGT 1058
||||||||||||| ||||||||||||| ||| ||||||||||| |||| ||||||||||
Sbjct 878 AGAAGTAAAGCTACTGCTTGAAACCTACAAAACAGAGCAAGAGAGTCTGACCTCAGAGGT 937
Query 1059 CAGAACTTGGCAGGACAAGTACGAGCAAGAGTCG-AGTCTTCGGAAACTAAGTGAGTATG 1117
|||||||||||||||||||||||||||||||| | |||| ||||||||| | ||| |||
Sbjct 938 CAGAACTTGGCAGGACAAGTACGAGCAAGAGT-GTCGTCTACGGAAACTAGGGGAGGATG 996
Query 1118 CACTTTCTAGAGAACAAGAAGAGCTTCAGATAGTCAAAGGACTGCTAGAATTTTACAATG 1177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 997 CACTTTCTAGAGAACAAGAAGAGCTTCAGATAGTCAAAGGACTGCTAGAATTTTACAACG 1056
Query 1178 GAGAAGCAGATGCGATGCGGGAAGAGAGGGACAAAGCTCTCAAAACAGCAAAAGAGCAAA 1237
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||
Sbjct 1057 GAGAAGCAGATGCGATGCGAGAAGAGAGGGACAATGCTCTCAAAACAGCAAAAGAGCTAA 1116
Query 1238 TGGAAAAGCGTCAACCTCCGTCATCGTTTTTCTGCCCTATCACACAGGAGGTCATGAAAG 1297
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
Sbjct 1117 TGGAAAAGCGTCAACCTCCATCATCGTTTTTCTACCCTATCACACAGGAGGTCATGAATG 1176
Query 1298 ATCCACACTTTGCTGCCGATGGATTCACATACGAAGCAGAATCTATTAGGAAATGGCTTA 1357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1177 ATCCACACTTTGCTGCCGATGGATTCACATACGAAGCAGAATCTATTAGGAAATGGTTTA 1236
Query 1358 GCACAGGTCACCAGACGTCGCCGATGACAAATCTCC-GACTTTCACATCTCACTCTTGTC 1416
| |||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||
Sbjct 1237 GAACAGGTCACCAGACGTCGCCGATGACAAATCTCCCG-CTTCCACATCTCACTCTTGTC 1295
Query 1417 CCTAACCGTGCTCTCCGCTCTGCGATTGAGGAGTTGGTTTGA 1458
||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1296 CCTAATCGTGCTCTCCGGACTGCGATTGAGGAGTTGGTTTGA 1337
> Ahg914740 jgi|Araly1|914740|Al_scaffold_0001_4994
Length=1215
Score = 424 bits (229), Expect = 1e-117
Identities = 462/572 (81%), Gaps = 26/572 (5%)
Strand=Plus/Plus
Query 900 GCGTTTGAAGGCTGAGGAGTTTGAAAG-AAAGTACGAGGGTG-AGATGATTCTCAGGAGA 957
||||| ||||||||||||||| || || || ||| || || || || | |||||||||
Sbjct 657 GCGTTGGAAGGCTGAGGAGTTCGAGAGCGAA-TACAAGAATGAAG-TGGTACTCAGGAGA 714
Query 958 GAATCAGAGATTGCGCTGGagaaagaaaagaaagagttggaagaag-t-aaagctaa-ag 1014
|||||||| | ||||||||| ||||||| ||||||||||| || | | |||| || |
Sbjct 715 GAATCAGAAACTGCGCTGGATAAAGAAAGGAAAGAGTTGG-AGGGGATAAAAG--AACTG 771
Query 1015 cttgaaacctacgaaagagagcaagaGAATCTGTCCTCAG-AGGTCAGAACTTGGCAGGA 1073
|||||||| | | | ||| |||||||| ||| || | ||| | ||| ||||| ||
Sbjct 772 CTTGAAACTTGTGTCACAGAACAAGAGAACCTGAATTC-GCTGGTGATAACATGGCAAGA 830
Query 1074 CAAGTACGAGCAAGAGTCGAGTCTTCGGAAACTAAGTGAGTATGCACTTTCTAGAGAACA 1133
||||||||| |||||||| | | || | ||| || ||| |||| ||||||| || |
Sbjct 831 CAAGTACGACCAAGAGTCAATTATTAGAAAAGAAAAAGAGGATGCTCTTTCTA-CTAAAA 889
Query 1134 AGA-AGAGCTTC-AGA-TAGTCAAAGGACT-GCTAGAATTTTACAATGGAGAAGCAGATG 1189
| | ||||| || ||| | ||||||||||| | | |||| ||||| |||||||||||
Sbjct 890 AAACAGAGC-TCGAGACT-GTCAAAGGACTAG-TCGAATCGTACAAACAAGAAGCAGATG 946
Query 1190 CGATGCGGGAAGAGAGGGACAAAGCTCTCAAAACAGCAAAAGAGCA-AATGGAAAAGCGT 1248
||||||| ||||||||||||| ||||||||||||||| ||||| | | |||| |||
Sbjct 947 CGATGCGACAAGAGAGGGACAATGCTCTCAAAACAGCACAAGAG-ATAGTGGACGAGCAA 1005
Query 1249 CAACCTCCGTCATCGTTTTTCTGCCCTATCACACAGGAGGTCATGAAAGATCCACACTTT 1308
|||||||| | || |||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1006 CAACCTCCACCTTCATTTTTCTGCCCTATCACACAGGAGGTCATGCAAGATCCACACATG 1065
Query 1309 GCTGCCGATGGATTCACATACGAAGCAGAATCTATTAGGAAATGGCTTAGCACAGGTCAC 1368
||||| |||||||||||||||||| |||| |||||| ||| ||| ||| ||||||||||
Sbjct 1066 GCTGCTGATGGATTCACATACGAATTAGAAGCTATTAAGAATTGGATTAACACAGGTCAC 1125
Query 1369 CAGACGTCGCCGATGACAAATCTCC-GACTTTCACATCTCA-CTCTTGTCCCTAACCGTG 1426
||||| || |||||||||||||||| | ||| ||||||||| || ||||||||||||| |
Sbjct 1126 CAGACCTCACCGATGACAAATCTCCCG-CTTCCACATCTCAACT-TTGTCCCTAACCGAG 1183
Query 1427 CTCTCCGCTCTGCGATTGAGGAGTTGGTTTGA 1458
||||||||||||| ||||||||||||| ||||
Sbjct 1184 CTCTCCGCTCTGCCATTGAGGAGTTGGGTTGA 1215
> Ahg924139 jgi|Araly1|924139|scaffold_105420.1
Length=1103
Score = 224 bits (121), Expect = 1e-57
Identities = 176/201 (88%), Gaps = 9/201 (4%)
Strand=Plus/Plus
Query 646 GAAGTAAAGCTTAGGAAAGAAGCAGAAGATGCACTTGCTATGAA-AAAGGAAGATGTAGA 704
||||| ||||||||| |||| ||||||||||||| ||| ||| ||||||||| |||||
Sbjct 345 GAAGTCAAGCTTAGG---GAAGGAGAAGATGCACTTTCTA-GAACAAAGGAAGAAGTAGA 400
Query 705 GATGATGGAACAGTTGCTTGAGTCTTACAAGGAAGAACAAGGTAAATTGCAACTACAAGC 764
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 401 GATGATGGAACAGTTACTTGAGTCTTACAAGGAAGAACAAGGTAAATTGCAACTTCAAGT 460
Query 765 TAAAGCCTTGGAGCACAAGCTTGAAGCAGAGTTG-AGGCATAGGAAAGAAACAGAAACCT 823
|||||||||||||||||| | ||||||||||||| || | ||||| |||||| |||| |
Sbjct 461 TAAAGCCTTGGAGCACAAACATGAAGCAGAGTTGCAG-CGTAGGACAGAAACTGAAATCG 519
Query 824 TGCTT-GCCATAGAACGGGAT 843
| || ||||||||||| |||
Sbjct 520 CG-TTAGCCATAGAACGTGAT 539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54545230840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5