BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G56060.1 Length=436 Score E Sequences producing significant alignments: (Bits) Value Ahg474673 jgi|Araly1|474673|fgenesh2_kg.1__4627__AT1G56060.1 551 2e-156 > Ahg474673 jgi|Araly1|474673|fgenesh2_kg.1__4627__AT1G56060.1 Length=410 Score = 551 bits (298), Expect = 2e-156 Identities = 379/417 (91%), Gaps = 9/417 (2%) Strand=Plus/Plus Query 1 CAGACATAGCAATGGCTCAGTATCATCAACAGCATGAAATGAAGCAGACAATGGCAGAGA 60 |||||||| |||||||||||||||||||||| || |||||||||||||||||| |||||| Sbjct 1 CAGACATATCAATGGCTCAGTATCATCAACAACACGAAATGAAGCAGACAATGACAGAGA 60 Query 61 CACAGTATGTGACAGCGCCGCCACCGATGGGTTACCCGGTGATGATGAAAGACTCTCCCC 120 ||| |||||||||||| |||||||| ||||||||||||||||||| ||| || ||||||| Sbjct 61 CACCGTATGTGACAGCTCCGCCACCAATGGGTTACCCGGTGATGAAGAAGGAATCTCCCC 120 Query 121 AAACTGTGCAGCCTCCTCATGAG-GGTCAGAGCAAAGGCAGTGGTGGATTTTTACGTGGA 179 ||||||||||||||||| || || | ||||||||||||| |||||| |||||||||||| Sbjct 121 AAACTGTGCAGCCTCCTAATCAGACG-CAGAGCAAAGGCACTGGTGGCTTTTTACGTGGA 179 Query 180 TGTTTGGCTGCAATGTGCTGCTGCTGCGTTTTGGATTGTGTCTTCTAGGGAATCCTCCCA 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 180 TGTTTGGCTGCAATGTGCTGCTGCTGCGTTTTGGATTGTGTCTTCTAGGGAATCTTCCCA 239 Query 240 CTACACTATACACACAGCTTCTACTGATCTTTTTGTCTTGATTCTTGATGTTTTCTTTGT 299 | | || | |||||||||||||| |||||||||||||||||||||||| |||||| ||| Sbjct 240 C-A-AC-A--CACACAGCTTCTACGGATCTTTTTGTCTTGATTCTTGATTTTTTCTCTGT 294 Query 300 ACatttttataaagttttgatt-gagtgtttgctatttctgattttgttacatttggttg 358 || ||||||| |||||||| || ||||||| |||||||||||||||||||||||||||| Sbjct 295 ACCTTTTTATTAAGTTTTGGTTTGAGTGTT-GCTATTTCTGATTTTGTTACATTTGGTTA 353 Query 359 ttgttttgTAATTACATTCTTATTCTTTTGTATATTAGTTATTTCCCTGTTCTGAGT 415 ||| ||||||||||| |||||| ||||||| |||||||||||||||||||||||| Sbjct 354 CTGTACTGTAATTACATCCTTATTATTTTGTACATTAGTTATTTCCCTGTTCTGAGT 410 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15720102668 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5