BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G56060.1

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg474673 jgi|Araly1|474673|fgenesh2_kg.1__4627__AT1G56060.1         551    2e-156


> Ahg474673 jgi|Araly1|474673|fgenesh2_kg.1__4627__AT1G56060.1
Length=410

 Score =  551 bits (298),  Expect = 2e-156
 Identities = 379/417 (91%), Gaps = 9/417 (2%)
 Strand=Plus/Plus

Query  1    CAGACATAGCAATGGCTCAGTATCATCAACAGCATGAAATGAAGCAGACAATGGCAGAGA  60
            |||||||| |||||||||||||||||||||| || |||||||||||||||||| ||||||
Sbjct  1    CAGACATATCAATGGCTCAGTATCATCAACAACACGAAATGAAGCAGACAATGACAGAGA  60

Query  61   CACAGTATGTGACAGCGCCGCCACCGATGGGTTACCCGGTGATGATGAAAGACTCTCCCC  120
            ||| |||||||||||| |||||||| ||||||||||||||||||| ||| || |||||||
Sbjct  61   CACCGTATGTGACAGCTCCGCCACCAATGGGTTACCCGGTGATGAAGAAGGAATCTCCCC  120

Query  121  AAACTGTGCAGCCTCCTCATGAG-GGTCAGAGCAAAGGCAGTGGTGGATTTTTACGTGGA  179
            ||||||||||||||||| || ||  | ||||||||||||| |||||| ||||||||||||
Sbjct  121  AAACTGTGCAGCCTCCTAATCAGACG-CAGAGCAAAGGCACTGGTGGCTTTTTACGTGGA  179

Query  180  TGTTTGGCTGCAATGTGCTGCTGCTGCGTTTTGGATTGTGTCTTCTAGGGAATCCTCCCA  239
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  180  TGTTTGGCTGCAATGTGCTGCTGCTGCGTTTTGGATTGTGTCTTCTAGGGAATCTTCCCA  239

Query  240  CTACACTATACACACAGCTTCTACTGATCTTTTTGTCTTGATTCTTGATGTTTTCTTTGT  299
            | | || |  |||||||||||||| |||||||||||||||||||||||| |||||| |||
Sbjct  240  C-A-AC-A--CACACAGCTTCTACGGATCTTTTTGTCTTGATTCTTGATTTTTTCTCTGT  294

Query  300  ACatttttataaagttttgatt-gagtgtttgctatttctgattttgttacatttggttg  358
            || ||||||| |||||||| || ||||||| |||||||||||||||||||||||||||| 
Sbjct  295  ACCTTTTTATTAAGTTTTGGTTTGAGTGTT-GCTATTTCTGATTTTGTTACATTTGGTTA  353

Query  359  ttgttttgTAATTACATTCTTATTCTTTTGTATATTAGTTATTTCCCTGTTCTGAGT  415
             |||  ||||||||||| |||||| ||||||| ||||||||||||||||||||||||
Sbjct  354  CTGTACTGTAATTACATCCTTATTATTTTGTACATTAGTTATTTCCCTGTTCTGAGT  410



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15720102668


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5