BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56080.1
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474675 jgi|Araly1|474675|fgenesh2_kg.1__4629__AT1G56080.1 1639 0.0
> Ahg474675 jgi|Araly1|474675|fgenesh2_kg.1__4629__AT1G56080.1
Length=1124
Score = 1639 bits (887), Expect = 0.0
Identities = 1052/1127 (93%), Gaps = 30/1127 (3%)
Strand=Plus/Plus
Query 1 AAAAAGTGCGAATCTTCCAATAAAAACACGCCACGTAGTTTATTTAGGCAGCCGAAGATC 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 AAAAAGTGCGAATCTTCCAATAAAAACACGCCACGTAGTTTATTTGGGCAGCCGAAGATC 60
Query 61 CCGAG-GGCC-CTTT---GCGAT---GTCTCAAAGCGGCGGTGACTTCAACCTCTCCGAC 112
||||| | || ||| || || |||||||||| |||||||||||| ||||||||||
Sbjct 61 CCGAGAGACCTTTTTCGAGCAATGGAGTCTCAAAGCAGCGGTGACTTCAGCCTCTCCGAC 120
Query 113 GAGATTCTCGCCGTGATTCCCACCGACCCTTATGATCAACTCGACCTCGCCAGGAAGATC 172
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GAGATTCTCGCCGTGATTCCCACCGACCCTTATGATCAACTCGATCTCGCCAGGAAGATC 180
Query 173 ACTTCCATGGCTATCGCTTCAAGGGTTTCGAATCTGGAATCTCAAGTCTCCGGCTTGAGA 232
||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 181 ACTTCCATGGCCATAGCTTCGAGGGTTTCGAATCTGGAATCACAAGTCTCCGGCTTGAGA 240
Query 233 CAGAAGCTTCTTGAGAAGGATCGGCTTGTTCATGAACTTGAAGACAGAGTCTCTTCCTTT 292
||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||
Sbjct 241 CAGAAGCTTCTTGAGAAAGATCGGCTTGTCCGTGAACTTGAAGACAGAGTCTCTTCCTTT 300
Query 293 GAAAGACTTTACCATGAAGCTGACTCGAGTTTGAAGAATGTTGTCGATGAAAATATGAAA 352
||||||||||||||||| |||||||| | ||||||||||||||| |||||||||||||||
Sbjct 301 GAAAGACTTTACCATGAGGCTGACTCTACTTTGAAGAATGTTGTTGATGAAAATATGAAA 360
Query 353 CTGACTCAAGAACGAGATTCACTGGCAATCACTGCGAAGAAACTCGGTCGTGATTATGCA 412
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 361 CTAACTCAAGAACGAGATTCACTGGCTATCACTGCGAAGAAACTCGGTCGTGATTTTGCA 420
Query 413 AAGTTGGAAGCATTCAAGAGACAATTGATGCAGTCATTGAATGATGATAATCCATCTCAA 472
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 AAGTTGGAAGCATTCAAGAGACAATTGATGCAGTCATTGAATGATGACAATCCATCTCAA 480
Query 473 ACTGAGACTGCTGATGTCAGAATGGTTCCTCGAGGCAAAGATGAGAATTC-AA------A 525
|||||||| |||||||||||| |||||||||||||||||||||||||||| || |
Sbjct 481 ACTGAGACAGCTGATGTCAGAGTGGTTCCTCGAGGCAAAGATGAGAATTCGAATGGCTTA 540
Query 526 T--G-G-A----TCCTACTCAAACAATGAAGGTTTAAGTGAAGCGAGGCAAAGACAGTCT 577
| | | | |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 541 TCGGCGCACGGTTCCTACTCAAACAACCAAGGTTTAAGTGAAGCGAGGCAAAGACAGTCT 600
Query 578 ATGACTCCGCAGTTCTCTCCCGCG-TTTACACCAAGCGGAACACCAAAGATCTTATCTAC 636
||||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 601 ATGACTCTGCAATTCTCTCCCG-GTTTTACACCAAGCGGAACACCAAAGATCTTATCTAC 659
Query 637 TGCTGCTTCTCCGAGAAGCTACTCTGCTGCTTCATCGCCAAAGCTATTCTCTGGAGCTGC 696
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGGTGCTTCTCCGAGAAGCTACTCTGCTGCTTCATCGCCAAAGCTATTCTCTGGAGCTGC 719
Query 697 ATCTCCAACATCTTCACATTATGATATACGTATGTGGTCTTCAACTAGCCAGCAATCTTC 756
||| |||||| |||||||||||||||||||||||||||||||| | |||||||| |||||
Sbjct 720 ATCCCCAACAACTTCACATTATGATATACGTATGTGGTCTTCATCAAGCCAGCAGTCTTC 779
Query 757 AGTAGCAAACTCTCCTCCACGCTCGCATTCTGTTTCAGCTCGGCATCCGCGGATTGATGG 816
|||||||||||||||||| || ||||||||| ||||||||| |||||||||||||||||
Sbjct 780 AGTAGCAAACTCTCCTCCTCGGTCGCATTCTACTTCAGCTCGCCATCCGCGGATTGATGG 839
Query 817 GAAAGAGTTCTTTAGACAAGCCAGGAGCCGTTTGTCTTACGAACAGTTCAGTGCATTCCT 876
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GAAAGAATTCTTTAGACAAGCCAGGAGCCGTTTGTCTTACGAACAGTTCAGTGCATTCCT 899
Query 877 GGCTAACATCAAGGAACTTAACGCCCGGAAGCAGGGCCGCGAGGAAACATTACAGAAAGC 936
|||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||
Sbjct 900 GGCTAACATCAAGGAACTAAACGCTCGGAAGCAGAGCCGCGAGGAAACATTACAGAAAGC 959
Query 937 AGAGGAAATATTTGGAAAGGAAAACAATGATCTTTACATATCCTTTAAGGGACTTCTCAC 996
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 960 AGAGGAAATATTTGGAAAGGAAAACAATGATCTATACATATCGTTTAAGGGACTTCTCAC 1019
Query 997 AAGTGGGCGTTGAAACAAAAACTCACCAACTTCTAAGCTTTCTTTTCATGACCAAT--T- 1053
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1020 AAGTGGGCGTTGAAACAAAAAC--ACCAACTTCTAAGCTTTCTTTTCATGACCAATAATT 1077
Query 1054 AGTCATGACTGATTTCAAATTTGTAAAACCTCTTTAACCATAGAAGA 1100
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AGTCATGACTGATTTCAAATTTGTAAAACCTCTTTAACCATAGAAGA 1124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48797333760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5