BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56090.1
Length=1285
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474677 jgi|Araly1|474677|fgenesh2_kg.1__4631__AT1G56090.1 1417 0.0
> Ahg474677 jgi|Araly1|474677|fgenesh2_kg.1__4631__AT1G56090.1
Length=1163
Score = 1417 bits (767), Expect = 0.0
Identities = 1059/1189 (89%), Gaps = 64/1189 (5%)
Strand=Plus/Plus
Query 38 TTCACTCGCCATTATTGttcc-ctcttcttcttcttcttattctctggatctctccttct 96
||||||||||||||||||||| |||||||||||||||| |||||||||||||| | ||
Sbjct 1 TTCACTCGCCATTATTGTTCCTTTCTTCTTCTTCTTCTTCTTCTCTGGATCTCT-C-TCC 58
Query 97 ccctctcttctttctACAGTTATTTCGCTTTAGCAGAT-TACTTAAATCCACGGTTTCTT 155
||||||||||| |||||| ||||| ||||| ||| | || ||||||| ||||||||||
Sbjct 59 CCCTCTCTTCTCTCTACA---ATTTCTCTTTATCAG-TATAGTTAAATCTACGGTTTCTT 114
Query 156 CTTCTCCGGGAGCATTTATGGCGTCAGCGGTGACGGCGTCAGGCAAGGTGGAGAAAGGAC 215
|||||||||||| |||||| | || | |||||||||| |||||| || |
Sbjct 115 CTTCTCCGGGAGTATTTAT---G---GC----A-----TCAGGCAAGGAGGAGAAGGGGC 159
Query 216 ATCAGCTATATAGAGACGGCAAGTATAAGGAGGCGCTTCTCTTCTATACGGAGGCTCTTA 275
|||||||||| | ||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 160 ATCAGCTATACAAAGACGGCAAGTATAAAGAGGCGCTTCTCTTCTTTACGGAGGCTCTTA 219
Query 276 CT-GCTGCTAAAGCTAAACCACAGAAGATCGCTCTTCACAGCAACCGCGCCGCTTGTTAC 334
| ||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 220 -TGGCTGCTAAAGCCAAGCCTCAGAAGATCGCTCTTCACAGCAACCGCGCCGCTTGTTTT 278
Query 335 TTGAAATTGCACGATTTCATTAAGGCAGCAGAAGAATGCACTTGTGTTCTTGAGCTTGAT 394
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 279 TTGAAATTGAACGATTTCAATAAGGCAGCAGAAGAATGCACTTGTGTTCTTGAGCTTGAT 338
Query 395 CAGAAACATAGCGGAGCGTTGATG-CTGAGGGCTCAGACTTTAGTCACTCTTAAAGAATA 453
||||||||||| || ||||||| | |||||||||||||| ||||||||||||||||||||
Sbjct 339 CAGAAACATAGTGGTGCGTTGA-GTCTGAGGGCTCAGACATTAGTCACTCTTAAAGAATA 397
Query 454 CCAATCTGCTCTTTTTGATGTCACCAGGCTTATGGAGTTGAACCCTGATTCTGAGGTTTA 513
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 398 CCAATCTGCTCTTTTTGATGTCACCAGACTTATGGAGTTGAACCCTGATTCCAAGGTTTA 457
Query 514 TCAGAACCTCGAAGCTCGCTTGAGGACGCAGTTGTCCCTTGCTCCAATTCCTGAGTCTGA 573
||||||||| ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 458 TCAGAACCTTGAAGCTCGCTTGAGGACGCAGTTGTCCCTTGCTCCAATT-C-----CTG- 510
Query 574 AGCAGAATTGGAAGAAGAGAGTGA--C-GTTGAACAAGACGCTGAAGATAAAG-AAAGTA 629
| || | | |||||||||||||| | | ||||||||| | ||||| ||| ||||||
Sbjct 511 A--AG-A-T-GAAGAAGAGAGTGACGCAGAAGAACAAGACACACAAGAT-AAGAAAAGTA 564
Query 630 GAGAAGTTGAGCTTGGTG-TCAATGAGAGAAGAGATAAGAGGTTTGAGTCGGTAGTTTCC 688
|| |||||||| |||||| || | |||||||||||| |||||||||||||||||||||||
Sbjct 565 GACAAGTTGAGTTTGGTGTTC-ACGAGAGAAGAGATCAGAGGTTTGAGTCGGTAGTTTCC 623
Query 689 CTTAGAAGAGATCTAGAGA-CTACAGGAGAAGATGC-G--ATAAACAAGGGGGAAGTTGT 744
||||||||||| |||||| | | |||||||||||| | ||||||||||||||||||||
Sbjct 624 ATTAGAAGAGATATAGAGACCCA-AGGAGAAGATGCAGATATAAACAAGGGGGAAGTTGT 682
Query 745 TGCACCTAAAACACCAGAGGTTAGAGAACAGAACAGCAAGGAAGTGCC---AATGTCTGG 801
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 683 TGCACCTAAAACACCAGAGGTTAGAGAACAGAACAGCAAGGAAGTGCCGTTGTTGTCTGG 742
Query 802 AAAGCAATCTAATGCATGGCAAGCCATACCTAAGCCTAAGGGTCATTCAACACTCGATTA 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 AAAGCAATCTAATGCATGGCAAGCCATACCTAAGCCTAAGGGTCATTCAACACTCGATTA 802
Query 862 CGCCCGTTGGAATACAGTTGAAGATGATTCCAGTGAAGAAGAAGACGATGAAGACAGCGA 921
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 803 CGCCCGTTGGGATACAGTTGAAGATGATTCCAGCGAAGAAGAAGACGATGAAGACAGCGA 862
Query 922 TGACAGTGATGAGTCGCCACCTCAGTACAGATTCCGTGTTAAGACAGTCGGGGTGCGTCC 981
|||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 863 TGACAGTGATGAATCTCCACCCCAGTACAGATTCCGTGTCAAGACAGTCGGGGTGCGTCC 922
Query 982 TGTGAAGTGAAACATTGTAGATAGGAACATGGGATGGTTT-CTTTCATCCTGATATATTG 1040
|||||||||||| | ||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 923 TGTGAAGTGAAAAACTGTAGATAGGAACATGGGATGGTTTACTT-CATCCTGATATATTG 981
Query 1041 CATA-T-T-GCACAGGAGAGCTGTGAAAAAAGCATTAGAGTGAAGGGGATAGTG-A-T-- 1093
|||| | | |||||| |||||||||||||| ||||||||| ||||||| ||||| | |
Sbjct 982 CATAGTGTTGCACAGAAGAGCTGTGAAAAA-GCATTAGAGAGAAGGGGCTAGTGTAGTGT 1040
Query 1094 ACCAAAGCAGACTAGTCATGTTTTGAATTGCCTCTTCTGTAATTGGTTTCAGCGGTCACC 1153
||||||||||||| |||||||||| ||||||||| |||| |||||| |||||| ||||||
Sbjct 1041 ACCAAAGCAGACTCGTCATGTTTTAAATTGCCTCATCTGCAATTGGCTTCAGCAGTCACC 1100
Query 1154 ATGTATCAATGTGCTGTGTCTTTTTATACATCTTCGAAAAGAAACATAC 1202
|||||||| |||| ||||||| ||||||||||||| |||||||| ||||
Sbjct 1101 ATGTATCAGTGTGATGTGTCTATTTATACATCTTCCAAAAGAAAGATAC 1149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48034875420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5