BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56100.1
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924149 jgi|Araly1|924149|scaffold_105430.1 322 2e-87
Ahg924087 jgi|Araly1|924087|scaffold_105368.1 222 2e-57
Ahg337696 jgi|Araly1|337696|fgenesh1_pg.C_scaffold_1004261 183 1e-45
Ahg943664 jgi|Araly1|943664|scaffold_604208.1 165 4e-40
Ahg913200 jgi|Araly1|913200|Al_scaffold_0001_3454 110 2e-23
Ahg892980 jgi|Araly1|892980|Al_scaffold_0006_976 106 2e-22
Ahg950324 jgi|Araly1|950324|scaffold_802211.1 104 9e-22
Ahg346389 jgi|Araly1|346389|fgenesh1_pg.C_scaffold_4002731 104 9e-22
> Ahg924149 jgi|Araly1|924149|scaffold_105430.1
Length=500
Score = 322 bits (174), Expect = 2e-87
Identities = 207/223 (93%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 1 ATGACGATAATGATCAAGTTTCTCCTGTTAGCTCTGCTCGTGATCTCTCCGATTTGCGCC 60
|||||||| |||||||||| |||||| ||| |||| |||||||||||||||||||||||
Sbjct 21 ATGACGATGATGATCAAGTATCTCCTTTTAACTCTTCTCGTGATCTCTCCGATTTGCGCT 80
Query 61 GAGAAGGACCTGATGA-AAGAGGAATGCCATAATGCACAAGTTCCGACCATTTGCATGCA 119
|||||||||||||||| || |||||||| | ||||| ||||| |||||||||||||||||
Sbjct 81 GAGAAGGACCTGATGATAA-AGGAATGCAACAATGCCCAAGTCCCGACCATTTGCATGCA 139
Query 120 ATGTCTTGAATCCGACCCAACCTCCGTTCATGCAGACCGTGTTGGCATCGCCGAGATCAT 179
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 140 ATGTCTTGAATCCGACCCAACCTCCGTTCATGCTGACCGTGTTGGCATCGCCGATATCAT 199
Query 180 CATACACTGTCTCGACTCTCGTCTCGATATCATCACCAAGCAA 222
||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 200 CATACACTGTCTCGACTCTCGCCTCCATATCATCACCAAGCAA 242
> Ahg924087 jgi|Araly1|924087|scaffold_105368.1
Length=1640
Score = 222 bits (120), Expect = 2e-57
Identities = 183/212 (86%), Gaps = 10/212 (5%)
Strand=Plus/Plus
Query 333 GAAAGCTTTAAAAGTTGTAGATAATCTTCTAGCTGAATTAAACCAAACA-ACTGATGATG 391
||||||||||| ||||| ||||||||| || |||||||||||| || | ||||||||||
Sbjct 410 GAAAGCTTTAATGGTTGTGGATAATCTTTTAACTGAATTAAACC-AATATACTGATGATG 468
Query 392 CTGAGAAAGAAGGGATC--A-TAGATGTTGTTAATGCTACTTCTGAAGCTATTGAAAACG 448
|||||| ||||| || | ||||| |||||||||||||||||||||| ||| ||||||
Sbjct 469 TTGAGAACGAAGGTCTCATAGTAGATCTTGTTAATGCTACTTCTGAAGCAATTAAAAACG 528
Query 449 AAACTGAAG-T-CGATCTCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGAGAAGCC 506
|||||| || | || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 AAACTG-AGATGGGAAC-CAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGAGAAGCC 586
Query 507 TAAAAAGAAAAAG-GAGCAAAGAAAGTCAAGA 537
||| |||||||| || ||||||||| |||||
Sbjct 587 TAAGAAGAAAAAAAGATCAAAGAAAGGCAAGA 618
> Ahg337696 jgi|Araly1|337696|fgenesh1_pg.C_scaffold_1004261
Length=987
Score = 183 bits (99), Expect = 1e-45
Identities = 163/193 (84%), Gaps = 8/193 (4%)
Strand=Plus/Plus
Query 351 AGATAATCTTCTAGCTGAATTAAACCAAACAACTGATGATGCTGAGAAAGAAGGGATCAT 410
|||||||||| || |||||||| ||||||| |||||||||||||||| ||||| ||||
Sbjct 663 AGATAATCTTTTAACTGAATTATACCAAACTTCTGATGATGCTGAGAACGAAGGTCTCAT 722
Query 411 AGATGTTGTTAATGCTACTTCTGAAGCTATTG-AAA--ACGAAACT-GAAGTCGATCTC- 465
|||| |||||||||||||| | |||| |||| ||| |||||||| | | | | | |
Sbjct 723 AGATCCTGTTAATGCTACTTGTCAAGCAATTGAAAACTACGAAACTGGGA-TGGGT-ACA 780
Query 466 AAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGAGAAGCCTAAAAAGAAAAAG-GAGCA 524
|||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 781 AAGGAAGAAGATGGTGATGAGGAGGCTAAATCTGAGAAGCCTAAGAAGAAAAAAAGAGCA 840
Query 525 AAGAAAGTCAAGA 537
| ||||| |||||
Sbjct 841 AGGAAAGACAAGA 853
> Ahg943664 jgi|Araly1|943664|scaffold_604208.1
Length=559
Score = 165 bits (89), Expect = 4e-40
Identities = 182/224 (81%), Gaps = 17/224 (8%)
Strand=Plus/Plus
Query 10 ATGATCAAGTTTCTCCTGTTAGCTC-TGCTCGTGATCTCT--C----CGATTTGCGCCGA 62
|||||||||||||| || ||| | | || | ||||||||| | |||| ||||||||
Sbjct 30 ATGATCAAGTTTCTGCTATTAACACTTG-TGGTGATCTCTCCCATATCGATATGCGCCGA 88
Query 63 GAAGGACCTGATGA-AAGAGGAATGCCATAATGCACAAGTTCCGA-CCATTTGCATGCAA 120
|||||||||||||| || | |||||||| |||||| | | ||| | |||| |||||||||
Sbjct 89 GAAGGACCTGATGATAA-ATGAATGCCACAATGCAGACG-TCCCAGCCATATGCATGCAA 146
Query 121 TGTCTTGAATCCGACCCAACCTCCGTTCATGC-AGACCGTGTT-GGCATCGCCGAGATCA 178
|||||||||||||||||||||||| ||||||| | ||| | || ||||| || | |||
Sbjct 147 TGTCTTGAATCCGACCCAACCTCCATTCATGCCA-ACCAT-TTAGGCATAGCTGCCATCG 204
Query 179 TCATACACTGTCTCGACTCTCGTCTCGATATCATCACCAAGCAA 222
||||| |||||||||| || | ||| ||||||||||||| |||
Sbjct 205 TCATAAACTGTCTCGAATCCCACCTCCATATCATCACCAA-CAA 247
> Ahg913200 jgi|Araly1|913200|Al_scaffold_0001_3454
Length=180
Score = 110 bits (59), Expect = 2e-23
Identities = 89/102 (87%), Gaps = 7/102 (7%)
Strand=Plus/Plus
Query 440 TTGA-AAACGAAACTGAAG-T-CGATCTCAAGGAAAAAGATGGTGATGAGGAGGCTAAAT 496
|||| ||| ||||||| || | || | ||||||||||||||||||||||||||||||||
Sbjct 26 TTGAGAAA-GAAACTG-AGATGGGAAC-CAAGGAAAAAGATGGTGATGAGGAGGCTAAAT 82
Query 497 CTGAGAAGCCTAAAAAGAAAAAG-GAGCAAAGAAAGTCAAGA 537
||||||||||||| |||||||| || ||||||||| |||||
Sbjct 83 CTGAGAAGCCTAAGAAGAAAAAAAGATCAAAGAAAGGCAAGA 124
> Ahg892980 jgi|Araly1|892980|Al_scaffold_0006_976
Length=579
Score = 106 bits (57), Expect = 2e-22
Identities = 87/100 (87%), Gaps = 7/100 (7%)
Strand=Plus/Plus
Query 440 TTGA-AAACGAAACTGAAG-T-CGATCTCAAGGAAAAAGATGGTGATGAGGAGGCTAAAT 496
|||| ||| ||||||| || | || | ||||||||||||||||||||||||||||||||
Sbjct 425 TTGAGAAA-GAAACTG-AGATGGGAAC-CAAGGAAAAAGATGGTGATGAGGAGGCTAAAT 481
Query 497 CTGAGAAGCCTAAAAAGAAAAAG-GAGCAAAGAAAGTCAA 535
||||||||||||| |||||||| || ||||||||| |||
Sbjct 482 CTGAGAAGCCTAAGAAGAAAAAAAGATCAAAGAAAGGCAA 521
> Ahg950324 jgi|Araly1|950324|scaffold_802211.1
Length=318
Score = 104 bits (56), Expect = 9e-22
Identities = 70/76 (92%), Gaps = 4/76 (5%)
Strand=Plus/Plus
Query 465 CAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGAGAAGCCTAA-AA-A-GAAAAAGGA 521
||||||||||||||||||||||||||||||||||||||||||||| || | ||||||| |
Sbjct 214 CAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGAGAAGCCTAAGAAGAAGAAAAAG-A 272
Query 522 GCAAAGAAAGTCAAGA 537
||||||||| |||||
Sbjct 273 TCAAAGAAAGGCAAGA 288
> Ahg346389 jgi|Araly1|346389|fgenesh1_pg.C_scaffold_4002731
Length=321
Score = 104 bits (56), Expect = 9e-22
Identities = 84/96 (88%), Gaps = 7/96 (7%)
Strand=Plus/Plus
Query 440 TTGA-AAACGAAACTGAAG-T-CGATCTCAAGGAAAAAGATGGTGATGAGGAGGCTAAAT 496
|||| ||| ||||||| || | || | ||||||||||||||||||||||||||||||||
Sbjct 167 TTGAGAAA-GAAACTG-AGATGGGAAC-CAAGGAAAAAGATGGTGATGAGGAGGCTAAAT 223
Query 497 CTGAGAAGCCTAAAAAGAAAAAG-GAGCAAAGAAAG 531
||||||||||||| |||||||| || |||||||||
Sbjct 224 CTGAGAAGCCTAAGAAGAAAAAAAGATCAAAGAAAG 259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25694846058
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5