BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56110.1
Length=1782
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474678 jgi|Araly1|474678|fgenesh2_kg.1__4632__AT1G56110.1 2867 0.0
> Ahg474678 jgi|Araly1|474678|fgenesh2_kg.1__4632__AT1G56110.1
Length=1749
Score = 2867 bits (1552), Expect = 0.0
Identities = 1689/1755 (96%), Gaps = 10/1755 (1%)
Strand=Plus/Plus
Query 30 TTAGGGTTTTAGTTTCTTCTCCTCAAAAAATGGCGATGTATGTTATCTACGAGTCTTCTT 89
|||||||||||||||||||||||| ||||||||||||||||||| || |||| |||||||
Sbjct 1 TTAGGGTTTTAGTTTCTTCTCCTCCAAAAATGGCGATGTATGTTCTCCACGAATCTTCTT 60
Query 90 CCGGCTATGGTCTCTTCGAGGTTCACGGACTAGATGAGATCGGACAGAACACTGAGGCGG 149
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCGGCTATGCTCTCTTAGAGGTTCACGGACTAGATGAGATCGGACAGAACACTGAGGCGG 120
Query 150 TTCGGACTTCTGTCTCCGACCTCAGTCGCTTTGGCCGTGTTGTTCAGCTCACAGCGTTTC 209
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCGGACCTCCGTCTCCGACCTCAGTCGCTTTGGCCGTGTTGTTCAGCTCACAGCGTTTC 180
Query 210 ATCCCTTTGAGTCTGCTCTCGATGCTCTCAACCAAGTCAACGCCGTCTCTGAAGGTGTTA 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCCCTTTGAGTCTGCTCTCGATGCTCTCAACCAAGTCAACGCCGTCTCTGAAGGTGTTA 240
Query 270 TGACTGATGAGCTTAGAAGTTTTCTGGAGTTGAATCTTCCTAAGGTCAAGGAGGGAAAGA 329
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 241 TGACTGATGAGCTTAGAAGTTTTCTGGAGTTAAATCTTCCTAAAGTCAAGGAGGGAAAGA 300
Query 330 AACCCAAGTTCAGTTTAGGATTGGCTGAGCCTAAACTCGGTTCACATATATTTGAAGCTA 389
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 AGCCCAAGTTCAGCTTAGGATTGGCTGAGCCTAAACTCGGTTCACATATATTTGAAGCCA 360
Query 390 CTAAAATCCCATGCCAGAGCAATGAGTTTGTTCTTGAGCTTCTCAGAGGTGTTCGCCAGC 449
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 CTAAAATCCCATGCCAGAGCAATGAGTTTGTTCTTGAGCTTCTCAGAGGTGTACGCCAGC 420
Query 450 ATTTTGATAGGTTTATCAAGGACTTAAAGCCTGGTGATCTTGAAAAATCTCAGCTTGGAT 509
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 ATTTTGATAGGTTTATCAAGGACCTAAAGCCTGGTGATCTTGAAAAATCTCAGCTTGGAT 480
Query 510 TAGCTCACAGCTACAGCAGAGCCAAGGTGAAGTTCAATGTTAACCGAGTGGATAACATGG 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TAGCTCACAGCTACAGCAGAGCCAAGGTGAAGTTCAATGTTAACCGAGTGGATAACATGG 540
Query 570 TTATTCAAGCTATCTTCATGCTTGACACGCTTGATAAGGATATCAATTCCTTTGCCATGA 629
||||||||||||| ||| | |||||||||||||| |||||||||||||||||||||||||
Sbjct 541 TTATTCAAGCTATTTTCCTTCTTGACACGCTTGACAAGGATATCAATTCCTTTGCCATGA 600
Query 630 GAGTCAGGGAATGGTATTCGTGGCACTTCCCCGAACTAGTGAAGATAGTCAATGACAACT 689
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 601 GAGTCAGGGAATGGTATTCGTGGCACTTCCCTGAACTAGTGAAGATAGTCAATGACAACT 660
Query 690 ATCTTTACGCCCGTGTTTCAAAGATGATTGATGACAAGTCAAAGTTGACTGAAGATCACA 749
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 661 ATCTTTACGCCCGCGTTTCAAAGATGATTGATGACAAGTCAAAGTTGACTGAAGACCACA 720
Query 750 TCCCCATGCTTACTGAAGTCTTAGGGGATGAAGATAAGGCAAAGGAGGTCATCGAAGCTG 809
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 721 TCCCAATGCTTACTGAAGTCTTAGGGGATGAAGATAAGGCAAAGGAGGTTATCGAAGCTG 780
Query 810 GAAAAGCATCCATGGGCTC-GGATTTATCACCGCTTGACTTAATCAACGTACAGACCTTT 868
||||||||||||||||| | ||||||||||||||||||||| |||||||| ||||| |||
Sbjct 781 GAAAAGCATCCATGGGC-CAGGATTTATCACCGCTTGACTTGATCAACGTTCAGACATTT 839
Query 869 GCTCAGAAAGTTATGGACCTTGCTGACTACAGGAAGAAGCTCTATGATTATCTTGTCACT 928
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GCCCAGAGAGTTATGGACCTTGCTGACTACAGGAAGAAGCTCTATGATTATCTTGTCACT 899
Query 929 AAGATGAGCGACATTGCCCCTAATTTGGCTGCTTTGATTGGAGAAATGGTCGGTGCCCGT 988
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 900 AAGATGAGCGACATTGCCCCTAATTTGGCAGCTTTGATTGGAGAGATGGTCGGTGCCCGT 959
Query 989 TTGATTTCACATGCTGGAAGTCTGACTAACCTTGCTAAATGCCCATCTTCCACCCTCCAG 1048
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 960 TTGATTTCACATGCTGGAAGTCTGACTAACCTTGCTAAATGCCCATCTTCTACCCTCCAG 1019
Query 1049 ATTCTTGGAGCCGAGAAGGCTCTTTTCAGGGCACTTAAAACACGTGGAAACACTCCCAAG 1108
|| ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 1020 ATCCTTGGAGCCGAGAAGGCACTTTTCAGGGCGCTTAAAACTCGTGGAAACACTCCCAAG 1079
Query 1109 TATGGATTGATTTTCCATTCTTCCTTCATTGGCCGAGCATCTGCTAAGAACAAGGGCCGT 1168
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TATGGGTTGATTTTCCATTCTTCCTTCATTGGCCGAGCATCTGCTAAGAACAAGGGCCGT 1139
Query 1169 ATCGCTCGTTATCTTGCAAACAAGTGCTCTATAGCATCCCGGATTGATTGTTTTGCTGAT 1228
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 ATTGCTCGCTATCTTGCAAACAAGTGCTCTATAGCATCCCGGATTGATTGTTTTGCTGAT 1199
Query 1229 GGTGCAACTACTGCTTTTGGTGAGAAGCTTCGCGAACAAGTTGAGGAAAGGCTAGAATTT 1288
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1200 GGTGCAACTACTGCCTTTGGTGAGAAGCTTCGCGAACAAGTTGAAGAAAGGCTAGAATTT 1259
Query 1289 TATGACAAAGGTGTTGCCCCACGCAAGAACGTGGATGTAATGAAGGAGGTGATAGAGAAT 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TATGACAAAGGTGTTGCCCCACGCAAGAACGTGGATGTAATGAAGGAGGTGATAGAGAAT 1319
Query 1349 CT--AAA-GCAAGAAGAGGAAGGGAAGGAGCCAGTTGATGCCTCGGTgaagaaaagcaag 1405
|| ||| |||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1320 CTGCAAAAGCAAGACGAGGAAGGGAAGGAGCCAGTGGAGGCCTCGGTGAAGAAAAGCAAG 1379
Query 1406 aagaagaaggcaaagggtgaagaagaagaagaggtggtggcaatggaggaggacaagtca 1465
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1380 AAGAAGAAGGCAAAGGGTGAAGA-G--GAAGAGGTGGTGGCAATGGAGGAGGACAAGTCA 1436
Query 1466 gagaaaaagaagaagaaagagaagaggaagatggagactgcagaggagaacgagaaatca 1525
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1437 GAGAAAAAGAAGAAGAAAGAGAAGAGGAAGATGGAGACAGCAGAGGAGAATGAGAAATCA 1496
Query 1526 gagaagaagaagacaaagaagagtaaagctggaggagaagaggagaCTGATGATGGTCAC 1585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 GAGAAGAAGAAGACAAAGAAGAGTAAAGCTGGAGGAGAAGAGGAGACTGATGATGGTCAC 1556
Query 1586 AGCACCaagaagaagaagaagaagTCTAAGAGCGCTGAATAGAAAGGGATGCAACATTAA 1645
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||
Sbjct 1557 AGCACCAAGAAGAAGAAGAAGAAGTCTAAGAGCTCTGAATAGAGAGGGATGCAACAT-AA 1615
Query 1646 CAAACCCTGTATTGTAttttttttttGAGCTAAATTAATGTCGTCTGTTTTTCGTAGTGA 1705
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1616 CATACCCTGTATTGTATTTTTTTTT-GAGCTAAATTAATGTCGTCTGTTTTTCGTAGTGA 1674
Query 1706 ACATCGGAGAATTTTTGTTTTGGTCTGGAAACGATTCAAGGTTTGGCAATATCTTAAGTT 1765
|| | ||| ||||||||||||| ||||||||||| |||| |||||||||||||||||||
Sbjct 1675 ACTTTGGATAATTTTTGTTTTGCCCTGGAAACGATGCAAGATTTGGCAATATCTTAAGTT 1734
Query 1766 TGTTTAGGTTTTCAC 1780
|||||||||||||||
Sbjct 1735 TGTTTAGGTTTTCAC 1749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66886470220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5