BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G56150.1

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg924157 jgi|Araly1|924157|scaffold_105438.1                        610    3e-174


> Ahg924157 jgi|Araly1|924157|scaffold_105438.1
Length=391

 Score =  610 bits (330),  Expect = 3e-174
 Identities = 375/396 (95%), Gaps = 5/396 (1%)
 Strand=Plus/Plus

Query  26   CTCTTTAGAGGTTCTTTGGACGATGAAACAACTAATCCGCCGTTTATCGCGTGTCGCGGA  85
            ||| ||||||| |||||||||||||||||| |||||||||||| ||||||| ||||||||
Sbjct  1    CTCCTTAGAGG-TCTTTGGACGATGAAACAGCTAATCCGCCGTCTATCGCGAGTCGCGGA  59

Query  86   CTCAACACAGTATAGCCTCCTCCGGTCTGAATCCCAGCGTGGCCGCACCAAGAAGGAGAA  145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   CTCAACACAGTATAGCCTCCTCCGGTCTGAATCCCAGCGTGGCCGCACCAAGAAGGAGAA  119

Query  146  ACACAAATCTTGGGTTCCCGAGGGGCACGTGCCTGTTTACGTAGGCCACGAGATGGAGCG  205
            |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct  120  ACACAAATCTTGGGTTCCCGAGGGACACGTGCCTGTCTACGTAGGCCAAGAGATGGAGCG  179

Query  206  GTTCGTGGTGAATGCGGAGCTGCTCAACCACCCCGTTTTCGTAGCGTTGCTGAAGCAGTC  265
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct  180  GTTCGTGGTGAATGCGGAGCTTCTCAACCACCCCGTTTTCGTAGCGTTGCTGAAGCGGTC  239

Query  266  GGCTCAAGAGTATGGATACGAGCAACAAGGAGTGCTTCGCATCCCTTGCCACGTGCTTGT  325
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  240  GGCTCAAGAGTATGGATACGAGCAACAAGGAGTGCTTCGCATCCCTTGCCACGTACTTGT  299

Query  326  GTTCGAACGCATCTTGGAGTCTCTCCGTCTCGGACTCGCCGATCGAGTCACATGACCTAC  385
            ||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||| 
Sbjct  300  GTTCGAACGCATCTTGGAGTCTCTCCGTCTCGGACTCGCCGA--G--TCACATGACCTAA  355

Query  386  ACGATCTCTTTTGAGATTTAAGAAGTTTCTAGTGTC  421
            | | ||||||||||||  ||||| ||||||||||||
Sbjct  356  ATGGTCTCTTTTGAGACATAAGACGTTTCTAGTGTC  391



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20260617759


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5