BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56160.1
Length=1034
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474684 jgi|Araly1|474684|fgenesh2_kg.1__4638__AT1G56160.1 1297 0.0
> Ahg474684 jgi|Araly1|474684|fgenesh2_kg.1__4638__AT1G56160.1
Length=912
Score = 1297 bits (702), Expect = 0.0
Identities = 848/915 (93%), Gaps = 24/915 (3%)
Strand=Plus/Plus
Query 1 ATGGGGAAAGGAAGAGCACCATGCTGCGACAAGAACAAAGTGAAGAGAGGGCCATGGAGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAAAGGAAGAGCACCATGCTGCGACAAGAACAAAGTGAAGAGAGGGCCATGGAGC 60
Query 61 CCTCAAGAAGATCTCACTCTCATCACTTTTATTCAAAAACATGGCCATCAAAACTGGAGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTCAAGAAGATCTCACTCTCATCACTTTTATTCAAAAACATGGCCATCAAAACTGGAGA 120
Query 121 TCTCTTCCCAAGCTTGCTGGATTGTTGAGATGTGGGAAAAGTTGCCGACTAAGATGGATA 180
|||||||||||||||||||| ||| ||||||||||||| ||||||||||| |||||||||
Sbjct 121 TCTCTTCCCAAGCTTGCTGGGTTGATGAGATGTGGGAAGAGTTGCCGACTGAGATGGATA 180
Query 181 AACTATCTGAGACCGGACGTGAAGCGAGGCAACTTTAGCAAAAAGGAGGAAGATGCTATC 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 181 AACTATCTGAGACCGGACGTGAAGCGAGGTAACTTTAGCAAAAAGGAGGAAGATGCCATC 240
Query 241 ATTCACTACCATCAAACCCTTGGAAACAAGTGGTCAAAGATCGCGTCCTTCTTGCCGGGA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 ATTCACTACCATCAAACCCTTGGAAACAAGTGGTCAAAGATCGCGTCCTTCTTGCCCGGA 300
Query 301 AGAACTGACAACGAGATCAAAAACGTGTGGAACACGCATCTCAAGAAACGACTCACTCCA 360
||||| |||||||||||||| |||||||||||||| ||||||||||||||| | | || |
Sbjct 301 AGAACGGACAACGAGATCAAGAACGTGTGGAACACTCATCTCAAGAAACGATTAA-TC-A 358
Query 361 TCTTCTTCTTCTTCATCCCTCTCTAGCACTCATGACCAAAGCACAAAAGCAGATCATGAC 420
|| | |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 359 -CTCCATCTTCTTCCTCAATCTCTAGCACTCATGACCAAAGCACAAAAGCAGATCATGAC 417
Query 421 AAGAACTGTGACGGGGCTCAAGAAGAAATACATTCAGGGTTAAATGAGAGCCAAAACTCA 480
||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||
Sbjct 418 AAGAACTGTGACGGGGCTCAAGAAGAAATGCATTCAGGGTTAAAAGAGAGCCAAGACTCA 477
Query 481 GCTACTTCGTCACATCACCAAGGCGAGTGTATGCACACAAAACCAGAGCTTCATGAGGTT 540
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GCTACTTCGTCACATCCCCAAGGCGAGTGTATGCACACAAAACCAGAGCTTCATGAGGTT 537
Query 541 AATGGACTCAACGAGATCCAGTTCCTGCTCGACCATGATGACTTTGATGATATAACCTCT 600
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 538 AATGAACTCAACGAGATCCAATTCCTGCTCGACCATGATGACTTTGATGATATAACCTCT 597
Query 601 GAGTTTCTTCAGGATAACGATATCTTATTTCCGCTAGACTCTCTTCTTCATAACCACCAA 660
|||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| ||
Sbjct 598 GAGTTTCTTCAGGATAACGAAATGTTATTTCCGCTAGACTCTCTTCTTCATTACCACGAA 657
Query 661 ACTCACATTTCAACC-CAAGAA-A-TGACTCGAGAGGT---AACCAAATCGCAATCATTT 714
|||||||||||||| || | | |||||| |||||| ||||||||||||||||| |
Sbjct 658 TCTCACATTTCAACCACATGCGGAGTGACTCAAGAGGTGGTAACCAAATCGCAATCATCT 717
Query 715 GATCATCCTCAACC-GGA--TATCCCATGCGGATTTGAAGACACAAACGAAGAATCCGAC 771
||||||||||||| ||| |||||||| |||||||| |||||||||| ||||||| ||
Sbjct 718 GATCATCCTCAACTAGGACGTATCCCATATGGATTTGAGGACACAAACGGAGAATCCAAC 777
Query 772 TTGAGGAGACAGCTGGTTGAATCAACCACAC---C---TA-----A-CAATGAGTACGAC 819
||| |||||||| |||||||||||||||||| | || | |||||||||||||
Sbjct 778 TTGTGGAGACAGGTGGTTGAATCAACCACACATACACCTAGTCTTAACAATGAGTACGAC 837
Query 820 GAGTGGTTCAACTTCATTGACAACCAAACTTACTTTGATGATTTTAATTTCGTCGGAGAA 879
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GAGTGGTTCAACTTCATCGACAACCAAACTTACTTTGATGATTTTAATTTCGTCGGAGAA 897
Query 880 GTATGTCTATGAATG 894
||||||| |||||||
Sbjct 898 GTATGTCCATGAATG 912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38466023253
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5