BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56200.1
Length=715
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474690 jgi|Araly1|474690|fgenesh2_kg.1__4644__AT1G56200.1 804 0.0
> Ahg474690 jgi|Araly1|474690|fgenesh2_kg.1__4644__AT1G56200.1
Length=571
Score = 804 bits (435), Expect = 0.0
Identities = 526/567 (93%), Gaps = 17/567 (3%)
Strand=Plus/Plus
Query 50 GCTTTAGCCATGGCTATGGCGGCGTCTATTATCCAATCTTCTCCGCTCTCCTTCAATAGC 109
||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1 GCTTTTGCCATGGCTATGGCGGCGTCTATCATCCAATCTTCTCCGCTCTCATTCAATAGT 60
Query 110 AACAACGCAAAGCCACGGATTCATAGTTCAGGATCGCTCGGCGGAATCAAA-AGCCAAAA 168
| ||||| ||||| |||||||||||||||||||||||||| ||||||||| | |||||
Sbjct 61 AGCAACGAAAAGCTGCGGATTCATAGTTCAGGATCGCTCGGTGGAATCAAATTG-CAAAA 119
Query 169 TAGAGTCTCTCCATTGAGTGCGGTTGGATTAAGCTCAGGCCTTGGAAGTAGAAGGAAATC 228
|||||| |||||| | | | ||||| |||||||||||||||||||||||| ||||
Sbjct 120 TAGAGTGTCTCCA-T---T---G--GGATTGAGCTCAGGCCTTGGAAGTAGAAGGCAATC 170
Query 229 TCTTTTGATATGTCACTCAGCCATTAACGCGAAATGCAGTGAAGGACAAACACAGACCGT 288
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 171 TCTTTTGATATGTCACTCAGCTATTAACGCGAAATGCAGTGAAGGACAAACACAGACCGT 230
Query 289 TACTCGGGAGTCACCGACTATAACACAGGCTCCTGTACACTCTAAGGAGAAATCACCAAG 348
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 231 TACTCGGGAGTCACCGACAATAACACAGGCTCCTGTACACTCTAAGGAGAAATCACCAAG 290
Query 349 CCTAGACGATGGAGGAGACGGGTTCCCACCGCGAGATGATGGAGATGGTGGTGGAGGAGG 408
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 291 CCTAGACGATGGAGGAGACGGGTTCCCACCACGAGATGATGGAGATGGAGGTGGTGGAGG 350
Query 409 AGGGGGTGGAGGCAACTGGTCGGGTGGGTTCTTCTTCTTTGGTTTTCTGGCCTTCTTGGG 468
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 351 AGGGGGTGGAGGCAACTGGTCAGGTGGGTTCTTCTTCTTTGGTTTTCTGGCCTTCTTGGG 410
Query 469 TCTATTGAAGGATAAAGAGGGCGAGGAAGATTACCGAGGGAGCAGAAGGCGATA-ATAAT 527
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 411 TCTATTGAAGGATAAAGAGGGCGAGGAAGATTACCGAGGGAGCAGAAGGCGATAGAAAAT 470
Query 528 ATGGGC-CACTCTTGGTTA-TCTTATTACAGCTACAGGACTCATTTTGTATCTGTTTCGT 585
||| | || | ||||| | |||||||||||||||||| |||||||||||||||||||||
Sbjct 471 ATGA-CACA-T-TTGGTCAATCTTATTACAGCTACAGGTCTCATTTTGTATCTGTTTCGT 527
Query 586 TGAGTGGGGGATGATATGCCTTGTATT 612
||||||||||||||||||| |||||||
Sbjct 528 TGAGTGGGGGATGATATGCGTTGTATT 554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26304812730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5