BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56210.1
Length=1384
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474782 jgi|Araly1|474782|fgenesh2_kg.1__4736__AT1G56210.1 1618 0.0
> Ahg474782 jgi|Araly1|474782|fgenesh2_kg.1__4736__AT1G56210.1
Length=1345
Score = 1618 bits (876), Expect = 0.0
Identities = 1232/1394 (88%), Gaps = 63/1394 (5%)
Strand=Plus/Plus
Query 1 AATCTTTTGCATTCCCCAACACACACTCCTGtctctc-tt-tctatctctctct-TC-CA 56
|||||||||| |||||||||| ||||||||||||||| || ||| ||||||||| || |
Sbjct 1 AATCTTTTGCCTTCCCCAACATACACTCCTGTCTCTCTTTATCTCTCTCTCTCTCTCTCT 60
Query 57 CT-TC--AAACTTCAAAGATCTCACAACTTCTTTGAGTTTTGTAATGGCAACAGATGAAA 113
|| || ||||||||||||||||||||| || || ||| | | | ||| |
Sbjct 61 CTCTCTTTCCCTTCAAAGATCTCACAACTTC-TT---TTGTGT--T--CTGTA-ATG--A 109
Query 114 TGAAATCAGAAACTaaaaaaaCAGAACATAAGCAAAAACAATCTACACAAATCAAACAAG 173
||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||| |||
Sbjct 110 TGAAACCAGAAACTAAAAAAACAGAACAAAAGCAAAAACAATCTTCACAAATCAAAGAAG 169
Query 174 ACCTTCCTCCTCCGACCATACCACCTCTTCCACTTCCTTACAAGTCATGCACCTTGAAAG 233
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 170 ACCTTCCTCCTCCGACCATACCACCTCTTCCACTTCCTTACAAGTCATGCAGCTTGAAAG 229
Query 234 TTTCTATTCACTGCGAAGGCTGC-AAAAGAAAAGTCaaaaaaaTACTTACCAGCATTGAA 292
||||||||||||| ||||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct 230 TTTCTATTCACTGTGAAGGCTGCAAAAAG-AAAGTGAAAAAAATACTTACCAGTATTGAA 288
Query 293 GGTGTTTTTAAAGTGGACATTGATGTGAAACAGCATAAAGTAACGGTGATAGGAATCATC 352
||||||| ||||||||||||||||||||| || |||||||||||||| ||||||||| |
Sbjct 289 GGTGTTTATAAAGTGGACATTGATGTGAAGCAACATAAAGTAACGGTAATAGGAATCGTT 348
Query 353 TCGCCGGAGATTCTGTTAAAGAAGCTTAACAAAGCTGGTAAAAACGCTGAACAACTGCCG 412
|| ||||||||||| |||||||||||| |||| || ||||||||||| ||| | |||
Sbjct 349 TCACCGGAGATTCTTTTAAAGAAGCTTCACAAGGCAGGTAAAAACGCCGAATTGTTACCG 408
Query 413 GAGATACCCGACCCGGTTGACAACAAACCCAAACCCGTCGACCCgaaagagaagaacaag 472
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 409 GAGATACCCGACCCGGTTGAGAACAAACCCAAAACCGTCGACCCGAAAGAGAAGAACAAG 468
Query 473 aagaagaagaaagaagagaaa-gTGCAAATAACC-AATGAAGCTACTTCTTCCGGTATAG 530
|| |||||||||||||| ||| |||||| |||| || ||||||||||||||||||| |
Sbjct 469 AAAAAGAAGAAAGAAGA-AAATGTGCAACGAACCGAA-GAAGCTACTTCTTCCGGTACGG 526
Query 531 ATAATCCGGAAAAACCCG--GTTCTGG-AGAGTGTGATAAACCGGAATCTGAAAAACCCG 587
|||| ||||||||| ||| | || || | || ||||||||||||||||||||||| |||
Sbjct 527 ATAAACCGGAAAAAACCGAAG-TC-GGCA-AGAGTGATAAACCGGAATCTGAAAAAACCG 583
Query 588 TCGACGAAAAGTGTCT-TTCCGGTGACGGCGGTGAAACTTCCGGTCCTGTGAAAGAGGaa 646
|| || | ||||| | | ||||||||||| ||| || || | ||| |||||||| |
Sbjct 584 ACGCCGGAGAGTGT-TGTACCGGTGACGGCTGTG-AAGTT--GCTCCGGTGAAAGA-G-- 636
Query 647 aaaaaGGACGTTCTTAAGGAGAAAGATTCTGGGAAGGAAGAATCTCCGTCACCACCGGCG 706
|||||||| ||||||||||||||| |||||| ||||||||||||||||||| ||||| |
Sbjct 637 AAAAAGGATGTTCTTAAGGAGAAACATTCTGTCAAGGAAGAATCTCCGTCACTACCGGAG 696
Query 707 GATTCTTCGGCTCCGGCGGCGGAGAAGAAAGCTGAAGACACCGGTGGAGCTGTCCCTGAT 766
|||||| ||||||||||||||||||||||||||||||| |||||||||| | || |
Sbjct 697 GATTCTCCGGCTCCGGCGGCGGAGAAGAAAGCTGAAGAAACCGGTGGAG--G----TGGT 750
Query 767 AATGGCAAAGTTGGTaaaaagaagaaaaagaaagGGCAAAGTTTGGCTACTACTAACAAT 826
|||||||||| ||||||||| ||||||||||||||||||| |||| | ||| |||||||
Sbjct 751 AATGGCAAAGCTGGTAAAAAAAAGAAAAAGAAAGGGCAAAATTTGACCACTTGTAACAAT 810
Query 827 CCTACCGATGGACCTGCCCGTACTCAATCACTTCCTCCGCCCACTGCAACAGATTATGAC 886
||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 811 CCTACCGATGGACCTGCCCGTACTCAATCACTTCCTCCGCCCACTACAACAGATCACGAC 870
Query 887 CGTCCAATTAATCAGATCAACGACCACCATATAACAACCACTAATAATCCGCCACGTCAC 946
|||||| ||||||||||||| ||||||||||||| ||||| ||| ||||| |||||||||
Sbjct 871 CGTCCATTTAATCAGATCAATGACCACCATATAATAACCAATAACAATCCACCACGTCAC 930
Query 947 GATCTGTATCCTTATCCTGCACAAGGCTATTATGCGCCGCAAGTCATGTATGGCGTAAGT 1006
||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 931 GATATGTATCCTTATCCTGCACCAGGCTATTATGCGCCGCAAGTCATGTACGGCGTAAGT 990
Query 1007 TATAACGTTGCTCAACCTCCGGTGAGTGTAGACGCTGCGTCGTATTATACACCTCCACCA 1066
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 991 TATAACGTTGCTCAACCTCCGGTGAGTGTAGACGCTGCGTCGTATTATAGACCTCCACCA 1050
Query 1067 CCGTATTCGTATGCGTACATGCACAACGGTTATCAACCGTCCGATCAAAACCCTTGTCAA 1126
||||||||||| |||||||||||||| |||||||||||||||||||||||| ||| ||||
Sbjct 1051 CCGTATTCGTACGCGTACATGCACAATGGTTATCAACCGTCCGATCAAAACTCTTATCAA 1110
Query 1127 CCTCGGCCGTCAGATTCGTTTGAGTTATTCAGCGATGAGAATCCAAACGGTTGTGCGATA 1186
||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| || ||
Sbjct 1111 CCTCGACCGTCGGATTCATTTGAGTTATTCAGCGATGAGAATCCAAACGGTTGTTCGGTA 1170
Query 1187 ATGTGATGTCAAATTACCAAAAGGACCTTGAACTCTGCTTATACGCCTTGTATGACTTAA 1246
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 ATTTGATGTCAAATTACCAAAAGGACCTTGAACTCTGCTTATACGCCTTGTATGACTTAA 1230
Query 1247 GGATGGTTTCGTAATTTGAAGTTCTTTCACGTGCAAGTTAGCTTAATGGTGTTTCTAGTT 1306
||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||
Sbjct 1231 GGATGGTTTCGTAATTTGAAGTTCTA-CACGTGCAAGTTAGCTTAATGGTCTTTTTAGTT 1289
Query 1307 AAGTTTATTTTAATGAATGTTGTATTAGTTTTATAACTATGATTATGATTATGTTAAGAT 1366
| |||||| ||||||||||||| | ||||||||||||||||||||
Sbjct 1290 AGGTTTAT------GAATGTTGTATTA-T-----------GATTATGATTATGTTAAGAT 1331
Query 1367 AAAGATTAAGCTTT 1380
||||||||||||||
Sbjct 1332 AAAGATTAAGCTTT 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51809044203
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5