BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56220.3
Length=757
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474784 jgi|Araly1|474784|fgenesh2_kg.1__4738__AT1G56220.3 872 0.0
> Ahg474784 jgi|Araly1|474784|fgenesh2_kg.1__4738__AT1G56220.3
Length=714
Score = 872 bits (472), Expect = 0.0
Identities = 622/688 (90%), Gaps = 35/688 (5%)
Strand=Plus/Plus
Query 12 ACAAC-AGATTTTAAAAAACCCCAAAAACTTTACATTCTTAACAATTTCAACCCTATGGG 70
||||| || ||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ACAACAAG-TTTCAAAAAACCCCAAAAACTTTAGATTCTTAACAATTTCAACCCTATGGG 59
Query 71 CTTACTTGATCATCTCTGGGATGATACTGTCGCTGGTCCACGGCCAGAGAACGGCCTTGG 130
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 60 CTTACTTGATCATCTCTGGGATGATACCGTCGCTGGTCCACGGCCAGAAAACGGCCTTGG 119
Query 131 CAAGCTTCGTAAACACCATACCTTCAGTTTCCGACCTAGCTCCGGCAATGATCAATCGGA 190
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 120 CAAGCTTCGTAAACACCATACCTTCAGTTTCCGACCTAGCTCCGGCAATGAACAACCGGA 179
Query 191 AGCTGGAAGTGCGAGATCGTACGGTGAGGATTCGCTACCGGAAGAAGCAGTGAAAGTTAC 250
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 180 AGCTGGAAGTGCGAGATCGTACGGTGAGGATTCGCTACCGGAAGAGGCTGTGAAAGTTAC 239
Query 251 ACGTAGTATCATGATAATTAAACCACCGGGTTACCAAGGCAGTTCAGCTCCAGCTTC--- 307
| | || |||||||| ||||||||||||||||| |||||| |||||||||| |||||
Sbjct 240 AAGAAGCATCATGATTATTAAACCACCGGGTTATCAAGGCGGTTCAGCTCCGGCTTCTCC 299
Query 308 G-C--CT--G-CCGGTTCAACTCCGCCGCTATCACCTTTCTCTCCGCCGCTGTCTCCGTT 361
| | || | |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 300 GGCTTCTCCGGCCGGTTCAACTCCGCCGCTATCTCCTTTCTCTCCGCCGCTGTCTCCGTT 359
Query 362 CTCTGCAAACGCAGGGGGAAAGGAACCCTTTCGGTTTAGGAGACGGTCGACGTCGGATGC 421
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTCTGCAAACGCAGGAGGAAAGGAACCCTTTCGGTTTAGGAGACGGTCGACGTCGGATGC 419
Query 422 GTTCGAGAAGGCAGCAGGAGGATCAGAGACTGGACCAAGGAGCTCTCCTCCTACTTACGG 481
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTTCGATAAGGCAGCAGGAGGATCAGAGACTGGACCAAGGAGCTCTCCTCCTACTTACGG 479
Query 482 CATGTGATCTCTAACACACAACACAAGTCTTGAAAAAGAGAAGA-GAAGAAGAAAACAGA 540
|||||||||||||| | | || || | |||||||||| || ||| |||||||||||
Sbjct 480 CATGTGATCTCTAATA-A-AAT-CA--T---GAAAAAGAGA-GAAGAACAAGAAAACAGA 530
Query 541 GTACCCACCCTTAAACGATGTCGTTTAGACTGCATGAAGTGGTGGtttttttGCTTTTGT 600
|||||| |||| || |||||||| || ||||||||||| ||||||| ||||||||
Sbjct 531 GTACCC----TTAACCGCTGTCGTTTTCACAACATGAAGTGGTTGTTTTTT-GCTTTTGT 585
Query 601 AGGCCAAAGAGGTGTTCAGTGTTCTCTTATGTATGCGTGTATGAgtttgtttgtgtgttt 660
||||||||||||||||| | || | ||| |||||||||||||||||||||||||||
Sbjct 586 AGGCCAAAGAGGTGTTC--T---CT-T-ATGGGTGCGTGTATGAGTTTGTTTGTGTGTTT 638
Query 661 gttttttatatgtaatctcgt-tttttt 687
|||| | |||||||||||||| ||||||
Sbjct 639 GTTTCT-ATATGTAATCTCGTCTTTTTT 665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27905975244
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5