BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56230.1
Length=2447
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474787 jgi|Araly1|474787|fgenesh2_kg.1__4741__AT1G56230.1 3592 0.0
> Ahg474787 jgi|Araly1|474787|fgenesh2_kg.1__4741__AT1G56230.1
Length=2401
Score = 3592 bits (1945), Expect = 0.0
Identities = 2256/2407 (94%), Gaps = 17/2407 (1%)
Strand=Plus/Plus
Query 43 ATGTCTTGTCTTTAGATACTATCTTACTCTCTCTTCGAGAACTT-ATGTCT-TTAGAACG 100
|||||||||||||||||||| || |||||||||| ||||||||| |||||| || |||||
Sbjct 1 ATGTCTTGTCTTTAGATACTCTCCTACTCTCTCTCCGAGAACTTAATGTCTCTT-GAACG 59
Query 101 GTCGGAGTTCGTCGACGGTGTTGCGGCACGGAGTCTCAGTGAGATCTCAGAAGTTGACGC 160
||||||||||| |||||||||||||||||| ||||| || ||||| ||||||||||||||
Sbjct 60 GTCGGAGTTCGCCGACGGTGTTGCGGCACGAAGTCTAAGCGAGATTTCAGAAGTTGACGC 119
Query 161 CGTGAGAATTGGAGGTGATATTATATCTTCAGCGAGACGTCTCATCGCACTTTTAAGGTC 220
||||||||| ||| ||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 120 CGTGAGAATCGGAACTGATATTGTATCTTCAGCGAGACGTCTCATCGCACTATTAAGGTC 179
Query 221 CGTAGGAGATTGTCAATGGCTTCATCATCCACCCGTTATTGCTGAAGCTATTAGAAGGTA 280
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGTCGGAGATTGTCAATGGCTTCATCATCCACCCGTTATTGCTGAAGCTATTAGAAGGTA 239
Query 281 TGATGAGCTATGGATGCCGTTGATTTCTGATCTAACGGTTGGTTTAAAGCCACCGATGAT 340
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 240 TGATGAGCTATGGATGCCGTTGATTTCTGATCTAACGGTTGGTTTGAAGCCACCAATGAT 299
Query 341 TTTGCCTCCTCTTGATGTTGAATGGGTTTGGTTTTGTCACTGTTTGAATCCAGTGAGTTA 400
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 TTTGCCTCCTCTTGATGTTGAATGGGTTTGGTTTTGTCATTGTTTGAATCCAGTGAGTTA 359
Query 401 TAGTG-ATTACTGTGAAAGGAGATTCTCAAAACTTATAGGGAAGCCTGCGATTTACGACG 459
|| || |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 360 TA-TGGATTACTGTGAAAAGAGATTCTCAAAACTTATAGGGAAGCCTGCGATTTACGATG 418
Query 460 AAGAGAACGAGGATTACGCGGTTTTACAATGCGA-AAAGATCTGGAGTTTACGATATCCT 518
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 419 AAGAGAACGAGGATTACGCGGTTTTACAATGCGAGAAA-ATCTGGAGTTTACGATATCCG 477
Query 519 TTAGAGAGTTTTGAGAACAGAGCTGATCCTGATTCACTTGAGACTGTTTCTTTAGTTAAT 578
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 478 TTGGAGAGTTTTGAGAACAGAGCTGATCCTGATTCACTTGAGACTGTTTCTTCAGTTAAT 537
Query 579 GAAGATATTAAAAGTCTAGTGAAGAAGCAGATGTTTCTTTGGGAGAAGTTTTCAGCTCCT 638
||||||||||||||||||||| ||||||||| || ||||||||||||||||||||| |||
Sbjct 538 GAAGATATTAAAAGTCTAGTGGAGAAGCAGAAGTGTCTTTGGGAGAAGTTTTCAGCGCCT 597
Query 639 TACATGTCTGAAACCGTTTACTTGATCGCTGCTCGGTTACGTTACAAAGGGTTTTTGTTG 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TACATGTCTGAAACCGTTTACTTGATCGCTGCTCGGTTACGTTACAAAGGGTTTTTGTTG 657
Query 699 ATACTACACAAGTTTAAGGATGAGGTTTCTAGTCTTATTCCAGCTTCTGATATACTTCTT 758
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ATTCTACATAAGTTTAAAGATGAGGTTTCTAGTCTTATTCCAGCTTCTGATATACTTCTT 717
Query 759 ATGTGGCTTACGCATCAGAGCTACCCGACAGTATATAAAGATGATGTTGATGAAATGTTG 818
||||||||||||||||| || |||||||| |||||||||||||||||||||||| |||||
Sbjct 718 ATGTGGCTTACGCATCAAAGTTACCCGACGGTATATAAAGATGATGTTGATGAAGTGTTG 777
Query 819 GAGGAGATGACGAGAAAGGTGGTACAAGTTGGAGAAAAGGTAGAGAAAACAGAAGTGGAA 878
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 778 GAGGAGATGACGAGAAAAGTAGTACAAGTTGGAGAAAAGGTAGAGAAAACAGAAGTGGAA 837
Query 879 ACAACAAAAGAACTGTGGGATAGATACTTCAATCAACCATATGAGAAAGCAGGCGGTGAG 938
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 838 ACAACGAAAGAACTGTGGGATAGATACTTCAATCAACCGTATGAGAAAGCAGGCGGCGAA 897
Query 939 TTGTCGATAATAGCGAATGAGTCTGGTTTAAGTAACAACACAATGTTTTATTGGCCTGTC 998
||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 898 TTGACGATAATATCGAATGAGTCTGGTTTAAGTAACAACACTGTGTTTTATTGGCCTGTC 957
Query 999 TCTGATATGGATGTTAACACTGCGTATAAGTCCATTCGACCTAGATTTGTCTTGGAATTA 1058
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 958 TCTGATATGGATGTTAACACCGCGTATAAGTCCATTCGACCTAGATTTGTTTTGGAATTG 1017
Query 1059 TGTATATTTTTAAGGTTGAATCCAAAGGCAGAGCAG-AATGAGTCGATAGATCGGAGTTT 1117
||| ||||| ||||| ||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 1018 TGTGTATTTCTAAGGCTGAATCCAAAGGCAGAG-AGGAATGAGTCGATGGATCGGAGTTT 1076
Query 1118 TCTACGGTTGAGAGTTGCTAGATGTCATAGGAAGCTGCAGCTGGATAAGAAAATGACTGA 1177
||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1077 TCTTCGTTTGAGAGTTGCTAGATGTCATAGAAAGCTGCAACTGGATAAGAAAATGACTGA 1136
Query 1178 TTTGTCTAGCGAAGCGTCGTGGCAAAAAGCGTGGCATCTTTACTGTGAGTTTGGAACACT 1237
||| ||| |||| ||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 1137 TTTATCTTGCGATGCGTCGTGGCAGAAAGCGTGGCATCTTTACTGTGAGTTTGGTACGTT 1196
Query 1238 AGGGTTTATTTTGGAATCACATTGTGACCGTTCTCGTGGAATTTGTTTTAAAAGCGGAAA 1297
||||||| ||||||||||||||||||||||| ||||||| ||||| || |||||||||||
Sbjct 1197 AGGGTTTGTTTTGGAATCACATTGTGACCGTCCTCGTGGGATTTGCTTCAAAAGCGGAAA 1256
Query 1298 ACCAGAAGGGATGATAGAGTTTCCGTGGAATGATCTGTTAAGAGCGCATTCTCTAGCGTC 1357
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1257 ACCAGAAGGGATGATTGAGTTTCCTTGGAATGATCTGTTAAGAGCGCATTCTCTAGCGTC 1316
Query 1358 TGGTAGGTTTCTTGGTAAGCAAGTGAGTGTGTTTGCTTCAGTTACACCTCCAGTTCAAGC 1417
|||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1317 TGGTAGGTTTCTCGGTAAGCAAGTGAGTGTGTTTGCTTCGGTTACACCCCCAGTTCAAGC 1376
Query 1418 GCCCTACTTGCTGAGATTTGTACCGGATCGAGTTACCGATGATTCAGGTGCTATGATATC 1477
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1377 GCCCTACTTGCTGAGATTTGTACCGGATCGAGTTACAGATGATTCAGGTGCTATGATATC 1436
Query 1478 TGATTCAGTTCAAAGAACAAACAACTTCCGACCTCAAGAAGGAAGATGGCTTACTCGGAC 1537
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1437 TGATTCAGTTCAAAGAACAAATAACTTCCGACCTCAAGAAGGAAGATGGCTTACCCGGAC 1496
Query 1538 CGTGCTTGATCACGCTGGACGGGAATGCTTCGTTATCCGTATTCGAGTTGGGAAGGGAGT 1597
|||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 1497 TGTGCTTGATCACGCAGGACGGGAATGCTTTGTTATCCGCATTCGCGTTGGGAAGGGAGT 1556
Query 1598 GTTTAAACGTGGAGGTGAAGTTCCATCCCCGGTGAAATCAGAGGAGCGGATCACAGAGGT 1657
||||||||| ||| |||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct 1557 GTTTAAACGCGGAAGTGAAGTTCCATCCCCGGTGAAGTCAGAGGAGCGGATAACAGAGAT 1616
Query 1658 TCGAGTAGGTTCTTGGTCTTATGTCGAGGGTTCAATCGGTAAAGCTCCAGCGAAGGTGGT 1717
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1617 TCGAGTAGGTGCTTGGTCTTATCTCGAGGGTTCAATCGGTAAAGCTCCAGCGAAGGTGGT 1676
Query 1718 TGGAACCGTGACGCCTAAGGAACCAATGGAGGATTGGGAGGCAGCATGGGAATTTTCTAC 1777
||||||||||||||||||||||||| |||||||||||||||| || ||||||||||| ||
Sbjct 1677 TGGAACCGTGACGCCTAAGGAACCAGTGGAGGATTGGGAGGCTGCTTGGGAATTTTCAAC 1736
Query 1778 TGGTGATGAATTGTGCATCCGTTGGGACTCATTAGGAACTATCTCAGAACTTCGTTTATA 1837
||| || ||||||||||||||||||||| ||| |||||| |||||||||||| |||||||
Sbjct 1737 TGGAGACGAATTGTGCATCCGTTGGGACGCATCAGGAACCATCTCAGAACTTGGTTTATA 1796
Query 1838 TTCAAGAAACCCCGGTTCGCTGGTTCGGCTATTAACTGGACGGAGAATGCAATATAAAGG 1897
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1797 TTCAAGAAACCCGGGTTCGCTGGTTCGGCTATTAACTGGACGGAGAATGCAGTATAAAGG 1856
Query 1898 AGAAGATGAAGAAGACGACGAGGGTTTTGTAACAGTTGTTAGATCAACAGAAGAAGATCC 1957
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1857 AGAAGATGAAGAAGACGACGAGGGTTTTATAACAGTGGTTAGATCAACAGAAGAAGATCC 1916
Query 1958 AACTGAAAAAGCAACTGCTCTGATCGACTGGAAGCATCAAGCCGTGGAATTTCTTCCTGA 2017
||| ||||||||||||||||| |||||||||||||||||||| || |||||||| |||||
Sbjct 1917 AACAGAAAAAGCAACTGCTCTCATCGACTGGAAGCATCAAGCGGTTGAATTTCTGCCTGA 1976
Query 2018 GGAAGACGCGGTTTTCGTCTTGTTATTGTCGGTATCGATTCTAAGGAGTGTTACACATAA 2077
|||||||||||||||||||||| |||||||| |||| |||||||| ||||| ||||| ||
Sbjct 1977 GGAAGACGCGGTTTTCGTCTTGCTATTGTCGATATCAATTCTAAGAAGTGTAACACAGAA 2036
Query 2078 AAGAAGAGAAGATGTTGGTAAATTGTTGGTGCGGAAGAGGATAACAGAAGCTACCGGTGA 2137
|||||||||||||||||||||||||||||| || ||||||||||| |||||||| |||||
Sbjct 2037 AAGAAGAGAAGATGTTGGTAAATTGTTGGTACGAAAGAGGATAACCGAAGCTACAGGTGA 2096
Query 2138 ACGGGATTGGGGATCGGTTATTGTCGATGCTTCGTCAACAAATGTATCTTCTTCTTCCAG 2197
||||||||||||||| || || ||||||||||| ||||||||||||||||||||||| ||
Sbjct 2097 ACGGGATTGGGGATCAGTAATCGTCGATGCTTCATCAACAAATGTATCTTCTTCTTCAAG 2156
Query 2198 TCCATACGTAGAACCGTGGTATCGAAACTCCGGTAAGGTTATGGCAATGGAGGAGAAA-- 2255
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 2157 TCCATACGTAGAACCGTGGTATCGAAACTCCAGTAAGGTTATGGCGATGGAGGAGAAATC 2216
Query 2256 -GCACAAGTTGC-ACGATATCCATATCCTGTTATGAGCTATTCTAACGTTGATGGTGGTG 2313
||||||||||| | |||||||||||||||||||||||||||| ||| |||||||||| |
Sbjct 2217 AGCACAAGTTGCTA-GATATCCATATCCTGTTATGAGCTATTCAAACATTGATGGTGGCG 2275
Query 2314 ATAATTTGTACAAACATGTAATATTCGGGTGAAACTTCAAAAAGATTGCATAAT-TATTA 2372
|||||||||||||||| |||||||||||||||||||||||||||| |||| || | |||
Sbjct 2276 ATAATTTGTACAAACACGTAATATTCGGGTGAAACTTCAAAAAGACAGCATTATCT-TTA 2334
Query 2373 GTCAGATGGAT-GGTGTAACCAAAAGTAATACGATGCTTGGGATGTCTTAATCTCTATAA 2431
||||||||||| ||||||||| ||| ||||| |||||||||||||||| |||||||| ||
Sbjct 2335 GTCAGATGGATTGGTGTAACCTAAATTAATAGGATGCTTGGGATGTCTCAATCTCTAGAA 2394
Query 2432 ATTTATG 2438
|||||||
Sbjct 2395 ATTTATG 2401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92216483145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5