BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G56230.1 Length=2447 Score E Sequences producing significant alignments: (Bits) Value Ahg474787 jgi|Araly1|474787|fgenesh2_kg.1__4741__AT1G56230.1 3592 0.0 > Ahg474787 jgi|Araly1|474787|fgenesh2_kg.1__4741__AT1G56230.1 Length=2401 Score = 3592 bits (1945), Expect = 0.0 Identities = 2256/2407 (94%), Gaps = 17/2407 (1%) Strand=Plus/Plus Query 43 ATGTCTTGTCTTTAGATACTATCTTACTCTCTCTTCGAGAACTT-ATGTCT-TTAGAACG 100 |||||||||||||||||||| || |||||||||| ||||||||| |||||| || ||||| Sbjct 1 ATGTCTTGTCTTTAGATACTCTCCTACTCTCTCTCCGAGAACTTAATGTCTCTT-GAACG 59 Query 101 GTCGGAGTTCGTCGACGGTGTTGCGGCACGGAGTCTCAGTGAGATCTCAGAAGTTGACGC 160 ||||||||||| |||||||||||||||||| ||||| || ||||| |||||||||||||| Sbjct 60 GTCGGAGTTCGCCGACGGTGTTGCGGCACGAAGTCTAAGCGAGATTTCAGAAGTTGACGC 119 Query 161 CGTGAGAATTGGAGGTGATATTATATCTTCAGCGAGACGTCTCATCGCACTTTTAAGGTC 220 ||||||||| ||| ||||||| |||||||||||||||||||||||||||| |||||||| Sbjct 120 CGTGAGAATCGGAACTGATATTGTATCTTCAGCGAGACGTCTCATCGCACTATTAAGGTC 179 Query 221 CGTAGGAGATTGTCAATGGCTTCATCATCCACCCGTTATTGCTGAAGCTATTAGAAGGTA 280 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 CGTCGGAGATTGTCAATGGCTTCATCATCCACCCGTTATTGCTGAAGCTATTAGAAGGTA 239 Query 281 TGATGAGCTATGGATGCCGTTGATTTCTGATCTAACGGTTGGTTTAAAGCCACCGATGAT 340 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 240 TGATGAGCTATGGATGCCGTTGATTTCTGATCTAACGGTTGGTTTGAAGCCACCAATGAT 299 Query 341 TTTGCCTCCTCTTGATGTTGAATGGGTTTGGTTTTGTCACTGTTTGAATCCAGTGAGTTA 400 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 300 TTTGCCTCCTCTTGATGTTGAATGGGTTTGGTTTTGTCATTGTTTGAATCCAGTGAGTTA 359 Query 401 TAGTG-ATTACTGTGAAAGGAGATTCTCAAAACTTATAGGGAAGCCTGCGATTTACGACG 459 || || |||||||||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct 360 TA-TGGATTACTGTGAAAAGAGATTCTCAAAACTTATAGGGAAGCCTGCGATTTACGATG 418 Query 460 AAGAGAACGAGGATTACGCGGTTTTACAATGCGA-AAAGATCTGGAGTTTACGATATCCT 518 |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 419 AAGAGAACGAGGATTACGCGGTTTTACAATGCGAGAAA-ATCTGGAGTTTACGATATCCG 477 Query 519 TTAGAGAGTTTTGAGAACAGAGCTGATCCTGATTCACTTGAGACTGTTTCTTTAGTTAAT 578 || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 478 TTGGAGAGTTTTGAGAACAGAGCTGATCCTGATTCACTTGAGACTGTTTCTTCAGTTAAT 537 Query 579 GAAGATATTAAAAGTCTAGTGAAGAAGCAGATGTTTCTTTGGGAGAAGTTTTCAGCTCCT 638 ||||||||||||||||||||| ||||||||| || ||||||||||||||||||||| ||| Sbjct 538 GAAGATATTAAAAGTCTAGTGGAGAAGCAGAAGTGTCTTTGGGAGAAGTTTTCAGCGCCT 597 Query 639 TACATGTCTGAAACCGTTTACTTGATCGCTGCTCGGTTACGTTACAAAGGGTTTTTGTTG 698 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 TACATGTCTGAAACCGTTTACTTGATCGCTGCTCGGTTACGTTACAAAGGGTTTTTGTTG 657 Query 699 ATACTACACAAGTTTAAGGATGAGGTTTCTAGTCTTATTCCAGCTTCTGATATACTTCTT 758 || ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 658 ATTCTACATAAGTTTAAAGATGAGGTTTCTAGTCTTATTCCAGCTTCTGATATACTTCTT 717 Query 759 ATGTGGCTTACGCATCAGAGCTACCCGACAGTATATAAAGATGATGTTGATGAAATGTTG 818 ||||||||||||||||| || |||||||| |||||||||||||||||||||||| ||||| Sbjct 718 ATGTGGCTTACGCATCAAAGTTACCCGACGGTATATAAAGATGATGTTGATGAAGTGTTG 777 Query 819 GAGGAGATGACGAGAAAGGTGGTACAAGTTGGAGAAAAGGTAGAGAAAACAGAAGTGGAA 878 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 778 GAGGAGATGACGAGAAAAGTAGTACAAGTTGGAGAAAAGGTAGAGAAAACAGAAGTGGAA 837 Query 879 ACAACAAAAGAACTGTGGGATAGATACTTCAATCAACCATATGAGAAAGCAGGCGGTGAG 938 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 838 ACAACGAAAGAACTGTGGGATAGATACTTCAATCAACCGTATGAGAAAGCAGGCGGCGAA 897 Query 939 TTGTCGATAATAGCGAATGAGTCTGGTTTAAGTAACAACACAATGTTTTATTGGCCTGTC 998 ||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 898 TTGACGATAATATCGAATGAGTCTGGTTTAAGTAACAACACTGTGTTTTATTGGCCTGTC 957 Query 999 TCTGATATGGATGTTAACACTGCGTATAAGTCCATTCGACCTAGATTTGTCTTGGAATTA 1058 |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 958 TCTGATATGGATGTTAACACCGCGTATAAGTCCATTCGACCTAGATTTGTTTTGGAATTG 1017 Query 1059 TGTATATTTTTAAGGTTGAATCCAAAGGCAGAGCAG-AATGAGTCGATAGATCGGAGTTT 1117 ||| ||||| ||||| ||||||||||||||||| || ||||||||||| ||||||||||| Sbjct 1018 TGTGTATTTCTAAGGCTGAATCCAAAGGCAGAG-AGGAATGAGTCGATGGATCGGAGTTT 1076 Query 1118 TCTACGGTTGAGAGTTGCTAGATGTCATAGGAAGCTGCAGCTGGATAAGAAAATGACTGA 1177 ||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 1077 TCTTCGTTTGAGAGTTGCTAGATGTCATAGAAAGCTGCAACTGGATAAGAAAATGACTGA 1136 Query 1178 TTTGTCTAGCGAAGCGTCGTGGCAAAAAGCGTGGCATCTTTACTGTGAGTTTGGAACACT 1237 ||| ||| |||| ||||||||||| ||||||||||||||||||||||||||||| || | Sbjct 1137 TTTATCTTGCGATGCGTCGTGGCAGAAAGCGTGGCATCTTTACTGTGAGTTTGGTACGTT 1196 Query 1238 AGGGTTTATTTTGGAATCACATTGTGACCGTTCTCGTGGAATTTGTTTTAAAAGCGGAAA 1297 ||||||| ||||||||||||||||||||||| ||||||| ||||| || ||||||||||| Sbjct 1197 AGGGTTTGTTTTGGAATCACATTGTGACCGTCCTCGTGGGATTTGCTTCAAAAGCGGAAA 1256 Query 1298 ACCAGAAGGGATGATAGAGTTTCCGTGGAATGATCTGTTAAGAGCGCATTCTCTAGCGTC 1357 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1257 ACCAGAAGGGATGATTGAGTTTCCTTGGAATGATCTGTTAAGAGCGCATTCTCTAGCGTC 1316 Query 1358 TGGTAGGTTTCTTGGTAAGCAAGTGAGTGTGTTTGCTTCAGTTACACCTCCAGTTCAAGC 1417 |||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 1317 TGGTAGGTTTCTCGGTAAGCAAGTGAGTGTGTTTGCTTCGGTTACACCCCCAGTTCAAGC 1376 Query 1418 GCCCTACTTGCTGAGATTTGTACCGGATCGAGTTACCGATGATTCAGGTGCTATGATATC 1477 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1377 GCCCTACTTGCTGAGATTTGTACCGGATCGAGTTACAGATGATTCAGGTGCTATGATATC 1436 Query 1478 TGATTCAGTTCAAAGAACAAACAACTTCCGACCTCAAGAAGGAAGATGGCTTACTCGGAC 1537 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 1437 TGATTCAGTTCAAAGAACAAATAACTTCCGACCTCAAGAAGGAAGATGGCTTACCCGGAC 1496 Query 1538 CGTGCTTGATCACGCTGGACGGGAATGCTTCGTTATCCGTATTCGAGTTGGGAAGGGAGT 1597 |||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||| Sbjct 1497 TGTGCTTGATCACGCAGGACGGGAATGCTTTGTTATCCGCATTCGCGTTGGGAAGGGAGT 1556 Query 1598 GTTTAAACGTGGAGGTGAAGTTCCATCCCCGGTGAAATCAGAGGAGCGGATCACAGAGGT 1657 ||||||||| ||| |||||||||||||||||||||| |||||||||||||| |||||| | Sbjct 1557 GTTTAAACGCGGAAGTGAAGTTCCATCCCCGGTGAAGTCAGAGGAGCGGATAACAGAGAT 1616 Query 1658 TCGAGTAGGTTCTTGGTCTTATGTCGAGGGTTCAATCGGTAAAGCTCCAGCGAAGGTGGT 1717 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1617 TCGAGTAGGTGCTTGGTCTTATCTCGAGGGTTCAATCGGTAAAGCTCCAGCGAAGGTGGT 1676 Query 1718 TGGAACCGTGACGCCTAAGGAACCAATGGAGGATTGGGAGGCAGCATGGGAATTTTCTAC 1777 ||||||||||||||||||||||||| |||||||||||||||| || ||||||||||| || Sbjct 1677 TGGAACCGTGACGCCTAAGGAACCAGTGGAGGATTGGGAGGCTGCTTGGGAATTTTCAAC 1736 Query 1778 TGGTGATGAATTGTGCATCCGTTGGGACTCATTAGGAACTATCTCAGAACTTCGTTTATA 1837 ||| || ||||||||||||||||||||| ||| |||||| |||||||||||| ||||||| Sbjct 1737 TGGAGACGAATTGTGCATCCGTTGGGACGCATCAGGAACCATCTCAGAACTTGGTTTATA 1796 Query 1838 TTCAAGAAACCCCGGTTCGCTGGTTCGGCTATTAACTGGACGGAGAATGCAATATAAAGG 1897 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1797 TTCAAGAAACCCGGGTTCGCTGGTTCGGCTATTAACTGGACGGAGAATGCAGTATAAAGG 1856 Query 1898 AGAAGATGAAGAAGACGACGAGGGTTTTGTAACAGTTGTTAGATCAACAGAAGAAGATCC 1957 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 1857 AGAAGATGAAGAAGACGACGAGGGTTTTATAACAGTGGTTAGATCAACAGAAGAAGATCC 1916 Query 1958 AACTGAAAAAGCAACTGCTCTGATCGACTGGAAGCATCAAGCCGTGGAATTTCTTCCTGA 2017 ||| ||||||||||||||||| |||||||||||||||||||| || |||||||| ||||| Sbjct 1917 AACAGAAAAAGCAACTGCTCTCATCGACTGGAAGCATCAAGCGGTTGAATTTCTGCCTGA 1976 Query 2018 GGAAGACGCGGTTTTCGTCTTGTTATTGTCGGTATCGATTCTAAGGAGTGTTACACATAA 2077 |||||||||||||||||||||| |||||||| |||| |||||||| ||||| ||||| || Sbjct 1977 GGAAGACGCGGTTTTCGTCTTGCTATTGTCGATATCAATTCTAAGAAGTGTAACACAGAA 2036 Query 2078 AAGAAGAGAAGATGTTGGTAAATTGTTGGTGCGGAAGAGGATAACAGAAGCTACCGGTGA 2137 |||||||||||||||||||||||||||||| || ||||||||||| |||||||| ||||| Sbjct 2037 AAGAAGAGAAGATGTTGGTAAATTGTTGGTACGAAAGAGGATAACCGAAGCTACAGGTGA 2096 Query 2138 ACGGGATTGGGGATCGGTTATTGTCGATGCTTCGTCAACAAATGTATCTTCTTCTTCCAG 2197 ||||||||||||||| || || ||||||||||| ||||||||||||||||||||||| || Sbjct 2097 ACGGGATTGGGGATCAGTAATCGTCGATGCTTCATCAACAAATGTATCTTCTTCTTCAAG 2156 Query 2198 TCCATACGTAGAACCGTGGTATCGAAACTCCGGTAAGGTTATGGCAATGGAGGAGAAA-- 2255 ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 2157 TCCATACGTAGAACCGTGGTATCGAAACTCCAGTAAGGTTATGGCGATGGAGGAGAAATC 2216 Query 2256 -GCACAAGTTGC-ACGATATCCATATCCTGTTATGAGCTATTCTAACGTTGATGGTGGTG 2313 ||||||||||| | |||||||||||||||||||||||||||| ||| |||||||||| | Sbjct 2217 AGCACAAGTTGCTA-GATATCCATATCCTGTTATGAGCTATTCAAACATTGATGGTGGCG 2275 Query 2314 ATAATTTGTACAAACATGTAATATTCGGGTGAAACTTCAAAAAGATTGCATAAT-TATTA 2372 |||||||||||||||| |||||||||||||||||||||||||||| |||| || | ||| Sbjct 2276 ATAATTTGTACAAACACGTAATATTCGGGTGAAACTTCAAAAAGACAGCATTATCT-TTA 2334 Query 2373 GTCAGATGGAT-GGTGTAACCAAAAGTAATACGATGCTTGGGATGTCTTAATCTCTATAA 2431 ||||||||||| ||||||||| ||| ||||| |||||||||||||||| |||||||| || Sbjct 2335 GTCAGATGGATTGGTGTAACCTAAATTAATAGGATGCTTGGGATGTCTCAATCTCTAGAA 2394 Query 2432 ATTTATG 2438 ||||||| Sbjct 2395 ATTTATG 2401 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92216483145 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5