BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56240.1
Length=1142
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924303 jgi|Araly1|924303|scaffold_105584.1 1201 0.0
> Ahg924303 jgi|Araly1|924303|scaffold_105584.1
Length=890
Score = 1201 bits (650), Expect = 0.0
Identities = 785/852 (92%), Gaps = 1/852 (0%)
Strand=Plus/Plus
Query 158 AAAGGAAGAAGATGATGATGTTACCTGAAGCATGCGTAGCCAACATCCTTGCCTTCACAT 217
||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 12 AAA-GAAGAAGAAAATGATGTTACCAGAAGCATGTGTAGCCAACATCCTTGCCTTCACAT 70
Query 218 CTCCAGCCGATGCATTTTCGTCATCGGAAGTCTCTTCGGTGTTCCGGTTAGCGGGAGACT 277
|||| || |||||||| || || |||||||||||||| | ||||||||||| |||||||
Sbjct 71 CTCCGGCGGATGCATTCTCTTCGTCGGAAGTCTCTTCCATTTTCCGGTTAGCCGGAGACT 130
Query 278 CCGATTTTGTATGGGAAAAGTTTCTACCGTCCCATTACAAAAGCCTCATCTCTCAATCTA 337
| ||||| ||||||||||||||| | || || ||||| ||||| |||| |||||||| |
Sbjct 131 CTGATTTCGTATGGGAAAAGTTTTTGCCTTCAGATTACCAAAGCATCATTTCTCAATCCA 190
Query 338 CTGATCACCATCGGATTTTTTCGTCCAAAAAGGAGATTTATCGATGTTTATGTGACTCTC 397
||||||| ||| ||| |||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 191 CTGATCATCATAGGAGTTTTTCTTCCAAAAAGGAGATTTATCGATGTTTGTGTGACTCTC 250
Query 398 TTCTCATCGATAATGCTCGAAAGCTGTTCAAGATCAATAAATTTTCCGGGAAAATTTCCT 457
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 251 TTCTCATCGATAATGCTCGAAAGCTCTTCAAGATCAATAAATTTTCCGGGAAAATTTCCT 310
Query 458 ACATTTTATCAGCAAGAGATATTTCCATAACTTATAGTGACCATGCATCGTACTGCTCTT 517
||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||
Sbjct 311 ACATTTTATCAGCAAGAGATATTTCCATAACACATAGTGACCATGCATCTTACTGGTCTT 370
Query 518 GGAGCAATGTCTCAGATTCTAGATTTTCAGAGTCAGCTGAACTTATAACAACAGACCGAT 577
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 371 GGAGCAATGTCTCAGATTCTAGATTTTCGGAGTCAGCTGAACTTATAACGACAGATCGAT 430
Query 578 TAGAAATCAAGGGTAAAATTCAAACCACAGTTTTATCACCAAACACAAAATATGGAGCAT 637
|||||||||||||||||||||||||| |||||| ||||||||||||| ||| |||||||
Sbjct 431 TAGAAATCAAGGGTAAAATTCAAACCGGAGTTTTGTCACCAAACACAAGATACGGAGCAT 490
Query 638 ATCTCATCATGAAAGTAACTAACGGTGCTTACGGACTAGACCTAGTTCCGGCGGAGACAT 697
||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 491 ATCTCATAATGAAAGTCACTAAAGGTGCTTACGGACTAGACCTAGTTCCAGCGGAGACTT 550
Query 698 CGGTTAAATCTAAGAATGGTCAAAATAATAAGAACACAACTTATCTATGTTGCTTGGATG 757
|||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 551 CGGTAAAATCTAAGAATGGTCAAAATATTAAGAACACAACTTATTTATGTTGCTTGGATG 610
Query 758 AGAAGAAACAGCAAATGAAGCGGCTATTTTACGGGAACCGAGAAGAGCGAATGGCGATGA 817
|||||||||| |||||||||||| ||||||| || ||||||||||| |||||||||||||
Sbjct 611 AGAAGAAACAACAAATGAAGCGGTTATTTTATGGAAACCGAGAAGAACGAATGGCGATGA 670
Query 818 CTGTGGAGGCCGTAGGCGGAGACGGGAAAAGGAGGGAGCCGAAAGCTAGAGACGACGGGT 877
||||||| | ||||||||||||||||||||||| ||||| |||| |||||||||||| |
Sbjct 671 CTGTGGAAACGGTAGGCGGAGACGGGAAAAGGAGAGAGCCAAAAGGTAGAGACGACGGTT 730
Query 878 GGTTGGAGATTGAGTTAGGAGAGTTTGTGACACGAGAAGGAGAAGATGATGAAGTCAATA 937
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 731 GGATGGAGATTGAGTTAGGAGAGTTTGAGACACGAGAAGGAGAAGATGATGAAGTCAATA 790
Query 938 TGAGTCTTACGGAGGTGAAAGGATATCAACTGAAAGGTGGAATTGTGATTGATGGTATTG 997
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 791 TGAGTCTTACGGAGGTGAAAGGATATCAACTTAAAGGTGGAATTGTGATCGATGGTATTG 850
Query 998 AAGTGAGGCCTA 1009
||||||||||||
Sbjct 851 AAGTGAGGCCTA 862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42583298289
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5