BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56260.1
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474790 jgi|Araly1|474790|fgenesh2_kg.1__4744__AT1G56260.1 891 0.0
> Ahg474790 jgi|Araly1|474790|fgenesh2_kg.1__4744__AT1G56260.1
Length=776
Score = 891 bits (482), Expect = 0.0
Identities = 678/768 (88%), Gaps = 31/768 (4%)
Strand=Plus/Plus
Query 58 AACACAAAGCTTCTGTTTTTATTCAGCCTCGTCGGAGATTTAAGCGAAGCACGATTC-AA 116
|||||||||| |||| |||||| ||||||||||||||||| || ||||||||| | ||
Sbjct 12 AACACAAAGCCTCTG--TTTATTGAGCCTCGTCGGAGATTTTAGTGAAGCACGAAACAAA 69
Query 117 ACCCTTTTCGTATCTGTGTTAGGAATCAGATTGAAATCGAGGGTTTTGCTTTGTTGGAAC 176
|||||||||| ||| || | || || | |||| | | || ||||||| |||
Sbjct 70 ACCCTTTTCGCATC-----TATG-AT-AG---G-AATC-A--G-ATT--TTTGTTGAAAC 112
Query 177 TACAAAAACT-GATGGCTAAAT-CACAAATTGAACCTGGTGTTCCCATTACTCTACAAGA 234
|| ||||| | |||||| ||| | | ||| ||||| |||||||||||||||||||||||
Sbjct 113 TATAAAAA-TCGATGGC-GAATACTCGAATCGAACCCGGTGTTCCCATTACTCTACAAGA 170
Query 235 GCTTTATCCTTCTTCTCTGTTTTACAAAGAAGGTGTTTCACTTAGAGTTACAGCTATGTT 294
||||||||||||||||| ||||||||| |||| |||||||||||||||||||| |||||
Sbjct 171 GCTTTATCCTTCTTCTCAGTTTTACAAGGAAGCTGTTTCACTTAGAGTTACAGGAATGTT 230
Query 295 AAGAGGATATTCAGTTGAAACAGCTATAGGTGTTATTGAAGATGGAGGCAGAAGTCTCAA 354
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 231 GAGAGGATATTCAGTTGAAACAGCTATAGGTGTTATTGAAGATGGAGGCAAAAGTCTTAA 290
Query 355 AATCAATACTCAGAACATAAGAGATGTTAGTTTCAGGGTTGGCTCTATTTATCAGTTTAT 414
|||||||||||||||| || ||||| ||||||||||||||||||| ||||||||||||||
Sbjct 291 AATCAATACTCAGAACCTACGAGATATTAGTTTCAGGGTTGGCTCCATTTATCAGTTTAT 350
Query 415 TGGAGAGCTTCACATTGAACAACCCAATAATGAGGCGATCTTGCAGGCTCGAACAGGAAG 474
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 351 TGGAGAGCTTCACATTG---AGCCCAATAATGAGGCGATCTTGCAGGCTCGAACAGGAAG 407
Query 475 AAATGTGGACGGGATCGATATGAACCTCTACCGGAAAACAATCGAACTCCTAAGGCAGTT 534
||||||||| || |||||||||||||||||||| |||||| | ||||||||||| | ||
Sbjct 408 AAATGTGGATGGAATCGATATGAACCTCTACCGTAAAACAGTTGAACTCCTAAGAAAATT 467
Query 535 TCTAAAAGAAGAAGACAACAGCAATATGGTTGAGTGAGGCTAATTATCAGTTGCTATCCA 594
|||||||||||||| |||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 468 TCTAAAAGAAGAAGGCAACAGCAATATGGTTGAATAAAGCTAATTATCAGTTGCTATCCA 527
Query 595 AGTAACATAACCCACCCACATTTTCATATTTTGTTCCTTTATTACCTTGTCTTTCACTTG 654
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 528 AGTAACATAACCCACCCACATTTTCATATTTTGTTCCTTTATTATCTTGTCTTTCACTTG 587
Query 655 TAGATGAATCTTAGGAT-GGTGGATATGTTTTGGTCTGCTTTTTCATATGAGCAATTTTC 713
|||||||||||||| || ||||||| |||||||||||||||||||||||||| |||||||
Sbjct 588 TAGATGAATCTTAGAATTGGTGGATTTGTTTTGGTCTGCTTTTTCATATGAGTAATTTTC 647
Query 714 TGAAACGAATTTGTTTGAAATTGGCTAACCTGAAGG-AGT-TCGGTTTGGTAAATCGGTT 771
|||||||||| |||||||| |||||||||| | ||| | | | |||||||||| | ||||
Sbjct 648 TGAAACGAATGTGTTTGAATTTGGCTAACCGGGAGGGAATCT-GGTTTGGTAAGTTGGTT 706
Query 772 AAACCGGTTGGCTTTCCACGGTAAATAAGCTCAAGTAGTTCCGttttt 819
|||||||| || |||| | ||| ||| |||||||||| ||||||||||
Sbjct 707 AAACCGGTCGGTTTTCGATGGTGAATTAGCTCAAGTAATTCCGTTTTT 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34844346138
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5