BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56290.1
Length=2416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924306 jgi|Araly1|924306|scaffold_105587.1 3306 0.0
> Ahg924306 jgi|Araly1|924306|scaffold_105587.1
Length=2116
Score = 3306 bits (1790), Expect = 0.0
Identities = 1996/2095 (95%), Gaps = 15/2095 (1%)
Strand=Plus/Plus
Query 157 ATATTGTTAATATGTTTTCTGGGATAAAGATCATACCTCGTGATGAGGTGCATGATGATA 216
|||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 10 ATATTGTTAACATGTTTTCTGGGATAAAGATCATACCTCGTGATGAAGTGGTTGATGATA 69
Query 217 GTTGGGAGGGGGAAAGA-GAGAAATCTAAAGGTGGGAAGGATAGAAGAAGAAAGAACAAG 275
||| ||| ||||||| | ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 70 GTTCGGATGGGGAAA-ATGAGAAATCTAAAGGTGGGAAGGACAGAAGAAGAAAGAACAAG 128
Query 276 GACGTAAATAGAAAGGAGCGTAGGGGAGAAGGAAGTAAGAGAGATGGGAAGAAGATTGCC 335
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 GACGTTGATAGAAAGGACCGTAGGGGAGAAGGAAGTAAGAGAGATGGGAAGAAGATTGCC 188
Query 336 AAGAGTGGAGATGGCGAGACCGTTGATGATGACTTGCTTGAAGGGGATATTGTTAGAAAG 395
|||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||
Sbjct 189 AAGAGTGGAGATGGCGAGACCGTTCATGATGACTTTCTTGAAGGGGATATAGTTAGAAAG 248
Query 396 AAAATGGGTCTCGATTGGATGCTGCCGCCAACCCGAAAGGCTGATCCAAACCCTGCTTCA 455
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 AAAATTGGTCTCGATTGGATGCTGCCGCCAACCCGAAAGGCTGATCCAAACCCTGCTTCA 308
Query 456 GATGTAGAGGATAAATTTGAAGAAAGTGCACCTGAGGTAACTAAAGTTAACCCAAGGGAA 515
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 309 GATGTAGAGGATAAATTCGAAGAAAGTGCACCTGAGGTAACTAAAGTGAACCCAAGGGAA 368
Query 516 CTAAATCCTTATTTGAAAGAAAATGGAACCGGTTATCCAGAGGAAGAATCTGAGAAAAAA 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 CTAAATCCTTATTTGAAAGAAAATGGAACCGGTTATCCAGAGGAAGAATCTGAGAAAAAA 428
Query 576 CATGGTAAAGACCAGCTTTTACCTTCTTCGGTTGTTGGAGATGGGGGTGCAAGTTGGAGA 635
||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 429 CATGGTAAAGACCAGCTTTTACCATCTTCGGTTGTTGGGGATGGGGGTGCGAGTTGGAGA 488
Query 636 ATGAAAGCACTCAAGCGTGCGAAAG-AACAGGCTGCGAGAGAAGGGCTAAGGCTTGAGGA 694
|||||||||||||| ||||| |||| ||||||||||||||||||| | ||||||||||||
Sbjct 489 ATGAAAGCACTCAAACGTGC-AAAGGAACAGGCTGCGAGAGAAGGCCAAAGGCTTGAGGA 547
Query 695 GGTTGCTGGCGAGCGATATGGTTCTCTTGGTAACCTTGTTGAGTCTGTCGCATCTCAAAG 754
|||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 548 TGTTGCTGGAGAGCGATGGGGTTCTCTTGGTAACCTTGTTGAGTCTGTGGCATCTCAAAG 607
Query 755 AGCAGCTCCATCTCGTGCCCATTTGAATGCCATAAATAATAGAAGAAGAGGGGAAAATGA 814
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 608 AGCAGCTCCATCTCGTGCGCATTTGAATGCCATAAATAACAGAAGAAGAGGGGAAAATGA 667
Query 815 AAAGAATGATTCAGaaaaaaaaCCAAAAGAAAGAATTTCTGAGAAGGGTAATAATCGGGA 874
|||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 668 AAAGAATGATACAGAAAAAAAACCA---GAAAGAATTTCTGAGAAGGGTAATGATCGGGA 724
Query 875 GTATTTGAAAGGTGAGTCGTTGAACCATCGTGTATTGAGAGCCCCCAAAACCGACCCTTC 934
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 725 GTATTTGAAAGGTGACTCGTTGAACCATCGTGTATTGAGAGCCCCCAAAACTGACCCTTC 784
Query 935 TTTATCCTGGGGAAAGAGAAAGAGCCAAACTCATAGAAACGAAGACTCGAAGCTGATATC 994
||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 785 ATTATCTTGGGGAAAGAGAAAGAACCAAACTCATAGAAACGAAGACTCGAGGCTGATATC 844
Query 995 TGAAGCTGCAGCTCACATGAATAAGTTTTCCAATGACGGAAATTTCATGAAGGAAATGCT 1054
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 845 TGAAGCTGCAGCTCACTTGAATAAGTTTTCCAATGACGGGAATTTCATGAAGGAAATGCT 904
Query 1055 TTCTAAGCAGAAGAATGTATCAGTGTCTCCCGTAGAGACTCGTGGAGATCACAGAAGTGA 1114
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 905 TTCTAAGCAAAAGAATGTATCAGTGTCTCCCGTAGAGACTCGTGGAGATCACAGAAATGA 964
Query 1115 TGTGGAGCAGGAAGCATTACCGTCAGAGACCAATAAGGATGACGAAGGGACTCTTCCGAG 1174
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 965 TGTGGAGCAGAAAGCATTACCGTCAGAGACCAATAAGGATGGTGAAGGGACTCTTCCAAG 1024
Query 1175 TATGGAAAATTTAAGTGTGAATAAACTGGCTGCTAAAGCCTTACAGCTCCGTATGAAGGG 1234
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1025 TATGGAAACCTTAAGTGTGAATAAACTGGCTGCTAAAGCCTTCCAGCTCCGTATGAAAGG 1084
Query 1235 GAAACATGAAGAAGCCCAGAAAATTATGGAAGAAGCGGAAAGGCTGAAAGCAAAACAAGC 1294
|||||||||||||||||||||| ||||||||||||| || |||||||||||| |||||||
Sbjct 1085 GAAACATGAAGAAGCCCAGAAACTTATGGAAGAAGCAGAGAGGCTGAAAGCAGAACAAGC 1144
Query 1295 TGTTGGAGACGATTCATCCAAAGACCACCACTCCATCAGAACCGCAGTGAGATATCCTGT 1354
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1145 TGGTGGAGACGATTCATCCAAAGACCAC---TCCATCAGAACCGCAGTGAGATATCCTGT 1201
Query 1355 CAAAGATATGTCGGGTAGAAGGAAGAATGAAGATGATA---CGGATATGCATCTAGCCAA 1411
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1202 CAAAGATATGTCGGGTAGAAGGAAGAATGAAGATGATAATACGGATATGCATCTAGCCAA 1261
Query 1412 GAGCATAATGCAGAACAAACAGTACAAAACATCGAATCAAGCTGCTGATGATGAGTATGA 1471
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1262 GAGCATAATGCAGAACAAACAGTACAAAACATCTAATCAAGCTGCTGATGATGAGTATGA 1321
Query 1472 ATATGGAGACGCTCCAAGCAAAAAGTCCCGGAAGCGGGAATCGTCAAGTAACATTCCTGA 1531
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1322 ATACGGAGACGCTCCAAGCAAAAAGTCCCGGAAGCGGGAATCGTCCAGTAACATTCCTGA 1381
Query 1532 AAAGGACAACCGTGTGAAACGTATTATGACCCAGCAAGAACGCTGTCTCTTCTGTTTTGA 1591
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1382 AAAGGATAACCGTGTGAAACGTATTATGACTCAACAAGAACGCTGTCTCTTCTGTTTTGA 1441
Query 1592 GAACCCAAAGCGGCCGAAACATTTAGTTGTGTCCATTGCCAACTTCACCTATCTGATGTT 1651
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1442 GAACCCAAAGCGGCCGAAACATTTAGTTGTGTCCATTGCAAACTTCACCTATCTGATGTT 1501
Query 1652 ACCACAACATCAGCCCCTTGTCCAAGGCCATTGCTGTATCTTGCCAATGCAGCACGAGGC 1711
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1502 ACCACAACATCAGCCTCTTGTCCCAGGCCATTGCTGTATCTTGCCAATGCAGCACGAGGC 1561
Query 1712 AGCCAGCAGAAGTGTTGACGACAATGTTTGGGACGAGATTCGTAATTTCAAAAAGTGTCT 1771
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1562 AGCCAGCAGAAGTGTTGACGACAATGTTTGGGACGAAATTCGTAATTTCAAGAAGTGTCT 1621
Query 1772 TATAATGATGTATGCAAAAGAAGGAAAAGACGCAGTGTTTCTGGAGACAGTGATTGGTTT 1831
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1622 TATAATGATGTATGCAAAAGAAGGAAAAGACGCAGTGTTTCTGGAGACAGTGATAGGTTT 1681
Query 1832 GTCTCAGCAACGTCGCCACTGTTTGATCGAGTGTATCCCAATCCCCCAAGAGATAGCAAA 1891
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1682 GTCTCAGCAACGTCGCCACTGTTTGATCGAGTGTATCCCAATCCCCCAGGAGATAGCAAA 1741
Query 1892 AGAAGGTCCTTTATACTTCAAGAAGGCGATCGATGAAGCGGAAAGTGAATGGAGTCAGCA 1951
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1742 AGAAGGTCCACTATACTTCAAGAAGGCGATTGATGAAGCGGAAAGTGAATGGAGTCAGCA 1801
Query 1952 CAATGCGAAGAAGCTCATAGACACTAGCGTGAAAGG-TCTGAGGAACTCTATACCGAAGA 2010
|||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||| ||||
Sbjct 1802 CAATGCAAAGAAGCTCATAGACACTAGCGT-AAAGGGTCTGAGAAACTCTATACCCAAGA 1860
Query 2011 ATTTCCCTTACTTCCACGTTGAGTTTGGTTTAGACAAAGGGTTTGTTCACGTGATTGATG 2070
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1861 ATTTCCCTTACTTCCACGTTGAGTTTGGTCTAGACAAAGGGTTTGTTCACGTGATTGATG 1920
Query 2071 ATGAACAACAGTTCAATAGCAATCTTGGACTAAATGTAATCAGAGGAATGCTCGAGTTAC 2130
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1921 ATGAACAACAGTTCAATAGCAATCTTGGACTAAATGTTATCAGAGGAATGCTCGAGTTAC 1980
Query 2131 CAGAAGAAGATATGTATAGACGTAGAAGGCAGGAGTCGGTGGAGAGCCAGAAGAAGGCGG 2190
|||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1981 CAGAAGAAGACATGTACAGACGAAGAAGGCAGGAGTCGGTAGAGAGCCAGAAGAAGGCGG 2040
Query 2191 TTGCGACCTTTGCCCGCGAATGGGAACACTTTGATTGGACGAAACAGCTTGATTA 2245
||| || |||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 2041 TTGTGAGCTTTGCTCGCGAATGGGAACACTTTGATTGGACTAAACAACTTGATTA 2095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91035685550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5