BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56300.1
Length=928
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474793 jgi|Araly1|474793|fgenesh2_kg.1__4747__AT1G56300.1 1048 0.0
> Ahg474793 jgi|Araly1|474793|fgenesh2_kg.1__4747__AT1G56300.1
Length=817
Score = 1048 bits (567), Expect = 0.0
Identities = 756/839 (90%), Gaps = 46/839 (5%)
Strand=Plus/Plus
Query 19 aaaaaaaaTATCAAACCCTCTCTCGAAGTTTCCTTC-CATCTCTCTCCTACAAAGATATT 77
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1 AAAAAAAATATCAAACCCTCTCTCGAAGTTTCCTTCTCCTCTCTCTCCTACAAAGATATT 60
Query 78 TTTGTTTCATTCTCTTCTCCATCCACAAAAACCATTCCCTCTCTCAACTCTCTGAATATT 137
|||||||||||||||||||||||||| || | | |||||||||||||
Sbjct 61 TTTGTTTCATTCTCTTCTCCATCCAC---AA--A-----------AGCTCTCTGAATATT 104
Query 138 TTTCTTCTTACGATTTACAAATTTCCGATGCTGTGA----C--A-TTAACGTCTGAGAAC 190
||||| ||| | |||||||||||||||||||||||| | | |||||||||||||||
Sbjct 105 TTTCTCCTTCCAATTTACAAATTTCCGATGCTGTGACTGTCAAATTTAACGTCTGAGAAC 164
Query 191 AGAGAAACACTTCA-AATCTTTGAATTCGTAGTGCGACGGAGACGGAGGAGCCATCAGTT 249
|||||||||| ||| |||||||||| || |||||||||||||||||||||| || ||
Sbjct 165 AGAGAAACACATCACAATCTTTGAAATCACAGTGCGACGGAGACGGAGGAGCGAT---TT 221
Query 250 TCGAAAATGGCGTGCGAAGGTGGAGGATCTAACGTCAGATCTAGCTACTACACCATTCTC 309
|||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 222 TCGAAAATGGCGTGTGAAGGTGGAGGATCTAACGTCAGATCTAGCTACTACAACGTTCTC 281
Query 310 GGGATTCGTAAAGATGCCTCTGTTTCCGATATCCGCACTGCTTATCGTAAGCTAGCTATG 369
|| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 282 GGAATTCGTAAAGACGCCTCCGTTTCCGATATCCGTACTGCTTATCGTAAGCTAGCTATG 341
Query 370 AAATGGCATCCGGATAGATATGCTCGAAATCCTGGAGTCGCCGGAGAAGCTAAACGTCGG 429
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 342 AAATGGCATCCGGATAGATATGCTCGGAATCCTGGAGTTGCCGGCGAAGCTAAACGTCGG 401
Query 430 TTTCAACAAATCCAGGAAGCCTATTCTGTTTTGAATGATGAGAATAAGAGGTCAATGTAC 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 TTTCAACAAATCCAGGAAGCCTATTCTGTTTTGAATGATGAGAATAAGAGGTCAATGTAC 461
Query 490 GATGTTGGACTATATGATCCTCATGAAGATGATGACGATGACTTCTGTGATTTCATGCAA 549
|||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 462 GATGTTGGGCTTTATGATCCTCATGAAGATGATGACGATGACTTCTGCGATTTCATGCAA 521
Query 550 GAGATGATCTCAATGATGAACAATGTCAAAGACGCGGGAGAGAGCTTGGAAGACTTGCAA 609
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 522 GAGATGATCTCAATGATGAACAATGTCAAAGACGAGGGAGAGAGCTTGGAAGACTTGCAA 581
Query 610 CGAATGTTCACGGATATGGTTGGTGGAGATGGCGTGAGCTATGACTGTAACAATAATCCA 669
|||||||||||||| |||||||||||||||||||||| || |||||||||||| ||||||
Sbjct 582 CGAATGTTCACGGACATGGTTGGTGGAGATGGCGTGAACTTTGACTGTAACAACAATCCA 641
Query 670 AAGGGCAACAAAAGACCACGTGTCAATATCTCGAGGAG-TAGTGCTGCGATGCGTTAAGG 728
||||||| |||||||| |||||||||| |||| ||| | ||||||||||||||||||| |
Sbjct 642 AAGGGCAGCAAAAGACAACGTGTCAATGTCTCTAGG-GCTAGTGCTGCGATGCGTTAACG 700
Query 729 CTTACTTCTTT-TGTGTATGAGTGTCGTGTTGTATCAAAATTT-CAATTCCATGTTCAAT 786
||||||||||| |||||||| | |||||||||||||||||| ||||||||| ||||||
Sbjct 701 CTTACTTCTTTGTGTGTATG--TAACGTGTTGTATCAAAATTTTCAATTCCATTTTCAAT 758
Query 787 TGTCTA----GACC--A--T----AAAATAAATTATCTGTGAAAACCAACTAGAACTAG 833
|||||| |||| | | ||||||||||||||||||| |||||||||||||||
Sbjct 759 TGTCTAAATAGACCCCAAGTCCTTAAAATAAATTATCTGTGAACACCAACTAGAACTAG 817
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34424994051
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5