BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56310.1
Length=1857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914916 jgi|Araly1|914916|Al_scaffold_0001_5170 2566 0.0
> Ahg914916 jgi|Araly1|914916|Al_scaffold_0001_5170
Length=1710
Score = 2566 bits (1389), Expect = 0.0
Identities = 1572/1661 (95%), Gaps = 9/1661 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTTGGATTCT--A-AAGAAGCTGATTTGGAGGTAATAAGAGATGAGAAATCTGAA 57
||||||||||||||| | |||||||||| |||| |||||||| |||||||||| ||| |
Sbjct 1 ATGGGTTTGGATTCTGAAGAAGAAGCTGAGTTGGTGGTAATAAAAGATGAGAAAGCTGGA 60
Query 58 GCAAACACTGTGTGTTTACATGCGTTTTCAGATTTAACCTATGTGTCTCCTGTTGTGTTC 117
||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct 61 GCAAACACTGTGTGTTTACATTCATTTTCAGATTTAACTTATGTGTCTCCTGTTGTGTTC 120
Query 118 TTATACCTACTCAAAGAATGCTATAAACATGGTAGCTTGAAGGCAACAAAAAAGTTCCAA 177
|||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 121 TTATACCTTCTCAAAGAATGTTATAAACATGGAAGCTTGAAGGCAACTAAAAAGTTCCAA 180
Query 178 GCTTTACAGTATCAAGTTCATCGAGTTCTAGCTAATAAACCTCAACCAGGACCTGCTACT 237
||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTTTGCAGTATCGAGTTCATCAAGTTCTAGCTAATAAACCTCAACCAGGACCTGCTACT 240
Query 238 TTCATTATTAATTGTCTCACTTTACTTCCTTTATTTGGGGTATATGGTGAAGGCTTTAGT 297
||||||||||| ||||||||| | |||||| | |||||||||||||||||||| ||||||
Sbjct 241 TTCATTATTAAGTGTCTCACTGTGCTTCCTATGTTTGGGGTATATGGTGAAGGTTTTAGT 300
Query 298 CATTTAGTTATATCAGCTCTTCGCCGCTTCTTTAAAACAGTATCTGAACCAACTAGTGAA 357
||||| |||||||| || || ||||||||||||||| |||||||||||||||| ||||||
Sbjct 301 CATTTGGTTATATCGGCGCTACGCCGCTTCTTTAAATCAGTATCTGAACCAACAAGTGAA 360
Query 358 GAAGATATTTGTT-TGGCGAGAAAGCTAGCTGCTCAGTTCTTCCTTGCTACTGTTGGTGG 416
|||||||| | || | || ||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 361 GAAGATATGTCTTCT-GCTAGAAAACTAGCTGCTCAGTTCTTTCTTGCTACTGTTGGAGG 419
Query 417 ATCTTTAACTTATGATGAGAAGGTTATGGTGCATACTCTTAGAGTGTTTGATGTGAGGTT 476
|||||||||||||||||||||||| ||| |||||||||||| ||||||||||||| ||||
Sbjct 420 ATCTTTAACTTATGATGAGAAGGTGATGATGCATACTCTTAAAGTGTTTGATGTGGGGTT 479
Query 477 AACTAGTATCGATGAAGCCTTGTCTATCTCGGAAGTTTGGCAGAGATATGGGTTTGCTTG 536
|||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||
Sbjct 480 AACTAGTATCGATGAAGCTTTGTCTGTCTCGGAAGTTTGGCAGGGATATGGGTTTGCTAA 539
Query 537 TGGAAATGCGTTTCTGGAACAATACATTTCTGACTTGATCAAGTCGAAATCTTTCATGAC 596
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGGAAATGTGTTTCTGGAACAATACATTTCTGACTTGATCAAGTCGAAATCTTTCATGAC 599
Query 597 GGCTGTGACTCTGTTAGAGCATTTCTCTTTCCGTTTCCCTGGAGAAACTTTTCTTCAACA 656
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 600 GGCTGTGACTCTGTTAGAGCATTTCTCTTTCCGTTTTCCTGGAGAAACTTTTCTTCAACA 659
Query 657 AATGGTTGAGGATAAA-AATTTCCAAGCTGCAGAGAGATGGGCTACCTTCATGGGAAGGC 715
|||| ||||||||||| | ||| |||||||||||||||||||||||||||||||||||||
Sbjct 660 AATGCTTGAGGATAAAGACTTT-CAAGCTGCAGAGAGATGGGCTACCTTCATGGGAAGGC 718
Query 716 CAAGTTTATGCATTCTTGTTCAAGAGTATGGCTCAAGGAATATGCTAAAGCAGGCCTATA 775
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 719 CAAGTTTATGCATTCTTGTTCAAGAATATGGCTCAAGGAATATGCTAAAGCAGGCCTATA 778
Query 776 ATATCATAAATAAGAACTATCTACAGCATGACTTTCCCGAATTGTATCACAAGTGTAAAG 835
|| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 779 ATGTCATAAATAAGAACTATCTCCAGCAGGACTTTCCCGAATTGTATCACAAGTGTAAAG 838
Query 836 AAAGTGCTCTGAAGGTTCTAGCAGAAAAAGCATGTTGGGATGTTGCTGAAATTAAGACAA 895
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 839 AAAGTGCTCTGAAGGTTCTAGCAGAAAAAGCATGCTGGGATGTTGCTGAAAATAAGACAA 898
Query 896 AAGGTGATAGACAGCTTCTGAAGTATCTGGTATACTTGGCAGTGGAAGCTGGATACTTGG 955
||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||
Sbjct 899 AAGGTGATAGACAGCTTCTTAAGTATCTGGTATACTTGGCAATGGAAGCTGGGTACTTGG 958
Query 956 AGAAGGTTG-ATGAACTGTGCGATCGATATTCACTTCAAGGGCTGCCAAAAGCACGAGAG 1014
|||||| || |||||||||| |||||||||||||||||||| |||| |||||||| ||||
Sbjct 959 AGAAGG-TGAATGAACTGTGTGATCGATATTCACTTCAAGGTCTGCGAAAAGCACAAGAG 1017
Query 1015 GCTGAGGTTGCTTTTGTTGAAAAAAGCTTTCTGCGTCTCAACGATCTAGCTGTAGAAGAT 1074
|||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1018 GCTGAGATTGCTTTTGTTCAAAAAAGCTTTCTGCGTCTCAACGATCTAGCTGTGGAAGAT 1077
Query 1075 GTAGTTTGGGTTGATGAAGTCAACGAGTTGAGAAAAGCAACTTCTTTTCTTGAAGGATGT 1134
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1078 GTAGTTTGGGTTGATGAAGTCAATGAGTTGAGAAAAGCAACTTCTTTTCTTGAAGGATGT 1137
Query 1135 AGAGTTGTGGGTATTGACTGTGAATGGAAACCTAATTATATTAAAGGCAGTAAACAGAAC 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 AGAGTTGTGGGTATTGACTGTGAATGGAAACCTAATTATATTAAAGGCAGTAAACAGAAC 1197
Query 1195 AAGGTTTCAATCATGCAAATTGGATCTGATACCAAAATTTTCATATTGGACTTGATAAAG 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AAGGTTTCAATCATGCAAATTGGATCTGATACCAAAATTTTCATATTGGACTTGATAAAG 1257
Query 1255 CTTTACAATGACGCCTCTGAAATTCTGGACAACTGCCTTAGTCACATTTTGCAATCGAAG 1314
||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1258 CTTTACAATGACGCCACTGAAATGCTGGACAACTGCCTTAGTCAGATTTTGCAATCGAAG 1317
Query 1315 AGTACATTAAAGCTCGGTTACAATTTTCAATGTGACATCAAGCAGTTGGCGCTTTCATAT 1374
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1318 AGTACATTAAAGCTCGGTTACAATTTTCAATGTGACGTCAAGCAGTTGGCGCTTTCTTAT 1377
Query 1375 GGGGATTTGAAATGTTTCGAGCGATACGACATGTTGCTAGACATTCAAAATGTTTTTAAT 1434
|| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1378 GGAGATTTGAAATGTTTCGAGCGGTATGACATGTTGCTAGACATTCAAAATGTTTTTAAA 1437
Query 1435 GAACCATTTGGTGGTTTAGCAGGACTAACGAAGAAAATATTGGGAGTGTCTTTGAACAAA 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 GAACCATTTGGTGGTTTAGCAGGACTAACGAAGAAAATATTGGGAGTGTCTTTGAACAAA 1497
Query 1495 ACAAGACGCAATAGCGACTGGGAACAAAGGCCTTTGAGCCAGAATCAGCTTGAGTATGCT 1554
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1498 ACAAGACGTAATAGCGACTGGGAACAAAGGCCTTTGACCCAGAATCAGCTTGAGTATGCT 1557
Query 1555 GCTCTTGATGCTGCAGTGTTGATTCACATATTTCGCCATGTTCGCGATCATCCTCCACAT 1614
|||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct 1558 GCTCTTGATGCTGCAGTGCTGATTCACATATTTCGTCATGTTCGAGATCATCCTCCACAT 1617
Query 1615 GACAGTAGTTCAGAGACAACCCAGTGGAAATCTCACATTGT 1655
|| ||||||||||||||| |||||||||||||||||||||
Sbjct 1618 GAAAGTAGTTCAGAGACAGTCCAGTGGAAATCTCACATTGT 1658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69743238595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5