BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G56320.1 Length=701 Score E Sequences producing significant alignments: (Bits) Value Ahg337810 jgi|Araly1|337810|fgenesh1_pg.C_scaffold_1004375 721 0.0 > Ahg337810 jgi|Araly1|337810|fgenesh1_pg.C_scaffold_1004375 Length=492 Score = 721 bits (390), Expect = 0.0 Identities = 460/494 (93%), Gaps = 4/494 (1%) Strand=Plus/Plus Query 36 ATGAATGTTCCAAAGGTGTCAAGACTTTGGCTACTCTATGCAGTGTTGCTCTTTGATAGT 95 ||| ||||||||||||| |||||||||||||||||||||||||||||||||||| | ||| Sbjct 1 ATGGATGTTCCAAAGGTTTCAAGACTTTGGCTACTCTATGCAGTGTTGCTCTTTCACAGT 60 Query 96 CAGAGACATTCAGTAAATGCGCAGGCTGGTGGTATCATCGGGGGCGCGGGGATTTTGGTT 155 ||||||||||||||||||||||||||||||||| | ||||| || || |||||||||||| Sbjct 61 CAGAGACATTCAGTAAATGCGCAGGCTGGTGGTGTGATCGGAGGTGCAGGGATTTTGGTT 120 Query 156 CAGAGAGCCGCGTTCTGTTTTAACAATAATCTGCTCTACAGAGGATGTAATGAGGCGTTC 215 ||||||||||| |||||||| |||||||| |||||||||||||| || ||||| |||||| Sbjct 121 CAGAGAGCCGCATTCTGTTTCAACAATAACCTGCTCTACAGAGGGTGCAATGAAGCGTTC 180 Query 216 AGACTAAACCAACA-AGGTGAATTCAAGGTTCCACCTGAGGAAACAGAC-AGATTCTGCA 273 |||||||||||| | |||||||||||||||||||||||||||||||||| || ||||||| Sbjct 181 AGACTAAACCAA-AGAGGTGAATTCAAGGTTCCACCTGAGGAAACAGACAAG-TTCTGCA 238 Query 274 ACGGTCCTTGTTCTGCAGAAACAGAACTTGTGCTTACATGCATTAATAGTGTCATGTCTG 333 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 239 ACGGTCCTTGTTCTGCAGAAACAGAACTCGTGCTTACATGCATTAATAGCGTCATGTCTG 298 Query 334 ATTTCGTGTTTTACAATCGTGCTACCCCGAGAGATGTAAGGAACGCCCTCCGTGGTGGCT 393 ||||| | |||||||| || |||||||||||||||||||||||| ||||||||||||||| Sbjct 299 ATTTCATATTTTACAACCGGGCTACCCCGAGAGATGTAAGGAACACCCTCCGTGGTGGCT 358 Query 394 GCAGCTCCTCTTTCACACGAGGAAACTTCAATGTGGGAGACTATGCTCAAGGACTCTATT 453 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 359 GCAGCTCCTCTTTCACACGAGGGAACTTCAATGTGGGAGACTATGCTCAAGGACTCTATT 418 Query 454 TCGGCAAGGCAGGGAAAAAGCTGCCTGGACTGTTCATTGTACTAGTTCTCGGGTTTGTAC 513 |||||||||| ||||||||||||||||| ||||| ||| ||||||| |||||||||||| Sbjct 419 TCGGCAAGGCCGGGAAAAAGCTGCCTGGGTTGTTCGTTGGACTAGTTGTCGGGTTTGTAC 478 Query 514 CACTGATCCTGTGA 527 || ||||||||||| Sbjct 479 CATTGATCCTGTGA 492 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25771091892 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5