BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56320.1
Length=701
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337810 jgi|Araly1|337810|fgenesh1_pg.C_scaffold_1004375 721 0.0
> Ahg337810 jgi|Araly1|337810|fgenesh1_pg.C_scaffold_1004375
Length=492
Score = 721 bits (390), Expect = 0.0
Identities = 460/494 (93%), Gaps = 4/494 (1%)
Strand=Plus/Plus
Query 36 ATGAATGTTCCAAAGGTGTCAAGACTTTGGCTACTCTATGCAGTGTTGCTCTTTGATAGT 95
||| ||||||||||||| |||||||||||||||||||||||||||||||||||| | |||
Sbjct 1 ATGGATGTTCCAAAGGTTTCAAGACTTTGGCTACTCTATGCAGTGTTGCTCTTTCACAGT 60
Query 96 CAGAGACATTCAGTAAATGCGCAGGCTGGTGGTATCATCGGGGGCGCGGGGATTTTGGTT 155
||||||||||||||||||||||||||||||||| | ||||| || || ||||||||||||
Sbjct 61 CAGAGACATTCAGTAAATGCGCAGGCTGGTGGTGTGATCGGAGGTGCAGGGATTTTGGTT 120
Query 156 CAGAGAGCCGCGTTCTGTTTTAACAATAATCTGCTCTACAGAGGATGTAATGAGGCGTTC 215
||||||||||| |||||||| |||||||| |||||||||||||| || ||||| ||||||
Sbjct 121 CAGAGAGCCGCATTCTGTTTCAACAATAACCTGCTCTACAGAGGGTGCAATGAAGCGTTC 180
Query 216 AGACTAAACCAACA-AGGTGAATTCAAGGTTCCACCTGAGGAAACAGAC-AGATTCTGCA 273
|||||||||||| | |||||||||||||||||||||||||||||||||| || |||||||
Sbjct 181 AGACTAAACCAA-AGAGGTGAATTCAAGGTTCCACCTGAGGAAACAGACAAG-TTCTGCA 238
Query 274 ACGGTCCTTGTTCTGCAGAAACAGAACTTGTGCTTACATGCATTAATAGTGTCATGTCTG 333
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 239 ACGGTCCTTGTTCTGCAGAAACAGAACTCGTGCTTACATGCATTAATAGCGTCATGTCTG 298
Query 334 ATTTCGTGTTTTACAATCGTGCTACCCCGAGAGATGTAAGGAACGCCCTCCGTGGTGGCT 393
||||| | |||||||| || |||||||||||||||||||||||| |||||||||||||||
Sbjct 299 ATTTCATATTTTACAACCGGGCTACCCCGAGAGATGTAAGGAACACCCTCCGTGGTGGCT 358
Query 394 GCAGCTCCTCTTTCACACGAGGAAACTTCAATGTGGGAGACTATGCTCAAGGACTCTATT 453
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 359 GCAGCTCCTCTTTCACACGAGGGAACTTCAATGTGGGAGACTATGCTCAAGGACTCTATT 418
Query 454 TCGGCAAGGCAGGGAAAAAGCTGCCTGGACTGTTCATTGTACTAGTTCTCGGGTTTGTAC 513
|||||||||| ||||||||||||||||| ||||| ||| ||||||| ||||||||||||
Sbjct 419 TCGGCAAGGCCGGGAAAAAGCTGCCTGGGTTGTTCGTTGGACTAGTTGTCGGGTTTGTAC 478
Query 514 CACTGATCCTGTGA 527
|| |||||||||||
Sbjct 479 CATTGATCCTGTGA 492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25771091892
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5