BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56330.1
Length=943
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471006 jgi|Araly1|471006|fgenesh2_kg.1__960__AT1G09180.1 665 0.0
Ahg943533 jgi|Araly1|943533|scaffold_604077.1 531 5e-150
Ahg337811 jgi|Araly1|337811|fgenesh1_pg.C_scaffold_1004376 516 1e-145
Ahg924310 jgi|Araly1|924310|scaffold_105591.1 329 2e-89
> Ahg471006 jgi|Araly1|471006|fgenesh2_kg.1__960__AT1G09180.1
Length=659
Score = 665 bits (360), Expect = 0.0
Identities = 511/584 (88%), Gaps = 10/584 (2%)
Strand=Plus/Plus
Query 71 CATGTTCTTGTTCGATTGGTTCTACGGAATCTTAGCTTCGTTAGGGTTATGGCAAAAAGA 130
|||||| ||||| ||||||||||| ||||| || || |||||||| || ||||| |||||
Sbjct 77 CATGTTTTTGTTTGATTGGTTCTATGGAATATTTGCGTCGTTAGGTTTGTGGCAGAAAGA 136
Query 131 AGCAAAGATCTTGTTTCTCGGTCTCGATAATGCTGGCAAAACTACATTACTTCACATGCT 190
||| |||||||||||||| || ||||| ||||| || |||||||| ||||||||||||||
Sbjct 137 AGCGAAGATCTTGTTTCTAGGCCTCGACAATGCCGGAAAAACTACTTTACTTCACATGCT 196
Query 191 CAAAGACGAGAGATTAGTTCAGCATCAGCCGACGCAACATCCAACGTCTGAAGAACTTAG 250
|||||||||||||||||||||||| ||||| || || ||||| |||||||| ||||||||
Sbjct 197 CAAAGACGAGAGATTAGTTCAGCACCAGCCAACACAGCATCCCACGTCTGAGGAACTTAG 256
Query 251 CATTGGAAAAATCAAGTTCAAGGCTTTTGATTTGGGTGGTCATCAGATTGCTCGTAGGGT 310
|||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| ||||
Sbjct 257 CATTGGCAAAATCAAGTTCAAGGCCTTTGATTTGGGTGGCCATCAGATTGCTCGTCGGGT 316
Query 311 TTGGAAAGATTACTATGCCAAGGTTGATGCTGTTGTCTACCTTGTGGATGCTTATGACAA 370
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 317 TTGGAAAGATTACTATGCCAAGGTTGATGCTGTTGTCTACCTTGTGGATGCTTACGACAG 376
Query 371 AGAAAGATTTGCAGAGTCAAAAAGAGAGCTTGATGCTCTTCTCTCGGATGAAGCCCTT-G 429
|| ||||||| ||||| ||||||||||| || |||||| | || ||||||||| || |
Sbjct 377 GGAGAGATTTGTGGAGTCGAAAAGAGAGCTAGACGCTCTTTTATCAGATGAAGCC-TTAG 435
Query 430 CAACTGT-CCCGTTTCTGATTCTTGGGAACAAGATTGATATCCCTTATGCAGCTTCTGAA 488
||| ||| ||| | ||| |||||||| |||||||||||||| ||||||||| | || |||
Sbjct 436 CAAATGTTCCC-TGTCTTATTCTTGGCAACAAGATTGATATTCCTTATGCATCCTCAGAA 494
Query 489 GACGAACTGAGGTATCACTTGGGTCTCACTAACTTCACCACCGGTAAGGGCAAAGTGACG 548
|| || || |||||||||||||||||||| || ||||| |||||||| ||||| || | |
Sbjct 495 GATGAGCTCAGGTATCACTTGGGTCTCACCAATTTCACTACCGGTAAAGGCAATGTCA-G 553
Query 549 -CTCGGAGACTCTGGTGTTCG-CCCACTTGAGGTCTTCATGTGCAGCATTGTCCGTAAAA 606
|| | | ||||||||||||| ||| ||||||||||||||||||||||| ||||| ||||
Sbjct 554 TCTTGAAAACTCTGGTGTTCGTCCC-CTTGAGGTCTTCATGTGCAGCATCGTCCGCAAAA 612
Query 607 TGGGTTATGGCGA-GGGATTCAAATGGCTCTCTCAGTACATCAA 649
|||||||||| || ||| ||||||||||| |||||||| |||||
Sbjct 613 TGGGTTATGGTGAAGGG-TTCAAATGGCTATCTCAGTATATCAA 655
> Ahg943533 jgi|Araly1|943533|scaffold_604077.1
Length=622
Score = 531 bits (287), Expect = 5e-150
Identities = 508/613 (83%), Gaps = 22/613 (4%)
Strand=Plus/Plus
Query 72 ATGTTCTTGTTCGATTGGTTCTACGGAAT-CTTAGCTTCGTTAGGGTTATGGCAAAAAGA 130
||||||||| | ||||||||||| || | | | |||||||||||||||||||| |||||
Sbjct 21 ATGTTCTTGGTAGATTGGTTCTATGGCGTAC-TCGCTTCGTTAGGGTTATGGCAGAAAGA 79
Query 131 AGCAAAGATCTTGTTTCTCGGTCTCGATAATGCTGGCAAAACTACATTACTTCACATGCT 190
|| |||||||||||||| || |||||||||||||| ||||| || || ||||||||| |
Sbjct 80 GGCTAAGATCTTGTTTCTTGGACTCGATAATGCTGGTAAAACCACTTTGCTTCACATGTT 139
Query 191 CAAAGACGAGAGATTAGTTCAGCATCAGCCGACGCAACATCCAACGTCTGAAGAACTTAG 250
|||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 140 GAAAGACGAGAGATTGGTACAGCATCAGCCAACGCAGCATCCAACGTCTGAAGAACTTAG 199
Query 251 CATTGGAAAAATCAAGTTCAAGGCTTTTGATTTGGGTGGTCATCAGATTGCTCGTAGGGT 310
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 200 CATTGGGAAAATCAAGTTTAAGGCTTTTGATTTGGGTGGTCATCAGATTGCTCGCAGGGT 259
Query 311 TTGGAAAGATTACTATGCCAAGGTTGATGCTGTTGTCTACCTTGTGGATGCTTATGACAA 370
||||| ||||||||||| ||||| || ||||| |||||||| || ||||||||||||||
Sbjct 260 CTGGAAGGATTACTATGCTAAGGTGGACGCTGTGGTCTACCTAGTAGATGCTTATGACAA 319
Query 371 AGAAAGATTTGCAGAGTCAAAAAGAG-AGCTTGATGCTCTTCTCTCGGATGAAGCCCTTG 429
||| ||||||||||| ||||||| || | ||||| || |||||||| || ||| |||| |
Sbjct 320 AGAGAGATTTGCAGAATCAAAAA-AGGAACTTGACGCACTTCTCTCAGACGAATCCCTAG 378
Query 430 C-AACTGTCCCGTTTCTGATTCTTGGGAACAAGATTGATATCCCTTATGCAGCTTCTGAA 488
| ||| ||||| || || ||||| || ||||| || || || ||||| || || || |||
Sbjct 379 CCAAC-GTCCCATTCCTCATTCTAGGAAACAAAATAGACATACCTTACGCTGCATCAGAA 437
Query 489 GACGAACTGAGGTATCA-CTTGGG-TCTCACTAACTTCACCACCGGTAAGGGCAAAGTGA 546
||||| || | || || || || |||| | |||||||| || || ||||| |||||||
Sbjct 438 GACGAGCTCCGTTACCATCTCGGACTCTC-C-AACTTCACAACAGGAAAGGGTAAAGTGA 495
Query 547 CGCT--CGGAGACTCTGGT-GTTCGCCCACTTG-AGGTCTTCATGTGCAGCATTGTCCGT 602
|| |||| || | || | ||| ||| |||| |||||||||||||||||| |
Sbjct 496 ATCTAACGGAT--TC-GAACGTAAGGCCA-TTGGAGGTTTTCATGTGCAGCATTGTCAGG 551
Query 603 AAAATGGGTTATGGCGAGGGATTCAAATGGCTCTCTCAGTACATCAACTAAAGACAGACG 662
||||||||||||||||| || ||||||||||| ||||| |||||||| ||| ||| |||
Sbjct 552 AAAATGGGTTATGGCGAAGGCTTCAAATGGCTTTCTCAATACATCAAGTAA-GAC-GACA 609
Query 663 TCAAGTCTTTTAT 675
|||| || ||||
Sbjct 610 -CAAG-CTGTTAT 620
> Ahg337811 jgi|Araly1|337811|fgenesh1_pg.C_scaffold_1004376
Length=633
Score = 516 bits (279), Expect = 1e-145
Identities = 311/326 (95%), Gaps = 4/326 (1%)
Strand=Plus/Plus
Query 330 AAGGTTGATGCTGTTGTCTACCTTGTGGATGCTTATGACAAAGAAAGATTTGCAGAGTCA 389
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 310 AAGGTTGATGCTGTTGTCTACCTTGTGGATGCTTATGACAAAGAGAGATTTGCAGAGTCA 369
Query 390 AAAAGAGAGCTTGATGCTCTTCTCTCGGATGAAGCCCTTGCAACTGT-CCCGTTTCTGAT 448
|||||||||||||| || ||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 370 AAAAGAGAGCTTGACGCACTTCTCTCGGATGAAGCCCTTGCAACTGTTCCC-TTTCTGAT 428
Query 449 TCTTGGGAACAAGATTGATATCCCTTATGCAGCTTCTGAAGACGAACTGAGGTATCACTT 508
|||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 429 TCTTGGAAACAAGATTGATATCCCTTATGCAGCTTCAGAAGACGAATTGAGGTATCACTT 488
Query 509 GGGTCTCACTAACTTCACCACCGGTAAGGGCAAAGT-GACGCTCGGAGACTCTGGTGTTC 567
||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||
Sbjct 489 GGGTCTCACTAACTTCACCACTGGTAAGGGCAAAGTCG-CGCTCGGAGACTCTGGTGTTC 547
Query 568 GCCCACTTGAGGTCTTCATGTGCAGCATTGTCCGTAAAATGGGTTATGGCGAGGGATTCA 627
||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 548 GCCCACTCGAGGTTTTCATGTGCAGCATTGTCCGGAAAATGGGTTATGGCGAGGGATTTA 607
Query 628 AATGGCTCTCTCAGTACATCAACTAA 653
||||||||||||||||||||||||||
Sbjct 608 AATGGCTCTCTCAGTACATCAACTAA 633
Score = 444 bits (240), Expect = 6e-124
Identities = 254/261 (97%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 72 ATGTTCTTGTTCGATTGGTTCTACGGAATCTTAGCTTCGTTAGGGTTATGGCAAAAAGAA 131
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGTTCTTGTTCGATTGGTTCTACGGAATCTTAGCCTCGTTAGGGTTATGGCAAAAAGAA 60
Query 132 GCAAAGATCTTGTTTCTCGGTCTCGATAATGCTGGCAAAACTACATTACTTCACATGCTC 191
|||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 61 GCAAAGATCTTGTTTCTCGGACTCGATAATGCTGGCAAAACCACCTTACTTCACATGCTC 120
Query 192 AAAGACGAGAGATTAGTTCAGCATCAGCCGACGCAACATCCAACGTCTGAAGAACTTAGC 251
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAAGACGAGAGATTAGTTCAGCATCAGCCGACGCAACATCCAACGTCTGAAGAACTTAGT 180
Query 252 ATTGGAAAAATCAAGTTCAAGGCTTTTGATTTGGGTGGTCATCAGATTGCTCGTAGGGTT 311
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTGGGAAAATAAAGTTCAAGGCTTTTGATTTGGGTGGTCATCAGATTGCTCGTAGGGTT 240
Query 312 TGGAAAGATTACTATGCCAAG 332
|||||||||||||||||||||
Sbjct 241 TGGAAAGATTACTATGCCAAG 261
> Ahg924310 jgi|Araly1|924310|scaffold_105591.1
Length=230
Score = 329 bits (178), Expect = 2e-89
Identities = 205/217 (94%), Gaps = 5/217 (2%)
Strand=Plus/Plus
Query 727 GAGCTAAAAGATTTGTGATTGACGATGTCACATCCTTCCCTTAGAAGACTTGAGAACACT 786
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1 GAGCTAAAAGATTTGTGATT---GATGTCACATCCTTCCCTTAGAAGACTT--GAACACT 55
Query 787 TTTTTCTCATATTTGTTCTTTTTGTTGTTTTCTGTGTGGAACATAAGTTTGGTGGCTTGC 846
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 56 TTTTTCTCTTATTTGTTCTTTTTGTTGTTTTCTGTGTTAAACATAAGTTTGGTGGCTTGC 115
Query 847 ATTTCCAAACTTATTCATTTCTCTTGTCCACATTTTTGTCAACTGCTTATGTTTCATTGA 906
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 116 ATTTCCAAACTTATTCATGCCTCTCGTCCACATTTTTGTCAACTGCTTATGTTTCATTGA 175
Query 907 ACATTATTCCCAAGTTAGACCACCAACTTTTTTGAAC 943
|||||||||||||||||||||||||||| ||||||||
Sbjct 176 ACATTATTCCCAAGTTAGACCACCAACTCTTTTGAAC 212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34996837806
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5