BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56345.1
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474797 jgi|Araly1|474797|fgenesh2_kg.1__4751__AT1G56345.1 1417 0.0
> Ahg474797 jgi|Araly1|474797|fgenesh2_kg.1__4751__AT1G56345.1
Length=1211
Score = 1417 bits (767), Expect = 0.0
Identities = 988/1091 (91%), Gaps = 30/1091 (3%)
Strand=Plus/Plus
Query 2 ATACAAATGTCCCTGCTTCGAAACTTCTTCTCCTTCACCTTCTCTGCAAATTCAATAATC 61
||||||||||| |||||||||||| ||||||||||| || ||||| |||||||||| ||
Sbjct 1 ATACAAATGTCACTGCTTCGAAACCTCTTCTCCTTCTCCATCTCTACAAATTCAATTCTC 60
Query 62 ACAAAACCCTATTTTGCAATCCCAATCAAAGCCATGGAAGCTACCTCTGAACTCAATCTC 121
|||||||||||||| |||||| ||| ||||||||||||| ||||||||||||||||||||
Sbjct 61 ACAAAACCCTATTTCGCAATCTCAACCAAAGCCATGGAATCTACCTCTGAACTCAATCTC 120
Query 122 AATTACCCAAAACCCATATCAGCTCCTCCACCTCCAATCTCCAAAGACATTGAACTCAGA 181
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 121 CATTACCCAAAACCCATATCTCCCCCTCCACCTCCAATCTCCAAAGACATTGAACTCAGA 180
Query 182 AGAGCAATGGAAGCTTCATCAAAATCAAGTCTCTTCAATCTTACAAGAGACGATATACTA 241
|||||||||||||||||||| |||||||||||||||||||| ||||||||| || || ||
Sbjct 181 AGAGCAATGGAAGCTTCATCGAAATCAAGTCTCTTCAATCTCACAAGAGACCATGTATTA 240
Query 242 TACGAAGACGAATACCTAATGGCTGTGAATAAACCAAAAGGTGTTTATTGTGAAGCTGTT 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TACGAAGACGAATACCTAATGGCTGTGAATAAACCAAAAGGTGTTTATTGTGAAGCTGTT 300
Query 302 CTTCGCTCTGCTCCTCAAATTGTTCTTGATTCTTCGAGTGAGTATCATTTAGCGAATAGA 361
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 CTTCGCTCTGCTCCTCAAATTGTTCTTGATTCTTCGAGTGAGTTTCATTTAGCGAATAGG 360
Query 362 TTAGATCGTGATACTAGTGGTGTAATGATTATTACTAAGTCACATAAAGTCGCTGCTAAG 421
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 TTAGATCGTGATACTAGTGGTGTGATGATTATTACTAAGTCACATAAAGTCGCTGCTAAG 420
Query 422 CTTGTTAAGGCATTCACAGAACATAAGATTCGTAAATCATACATTGCTCTTTGTATTGGT 481
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTTGTTAAGGCTTTCACAGAACATAAGATTCGTAAATCATACATTGCTCTTTGTATTGGT 480
Query 482 TCATCTCCAAATTGGAGGAGGGTCACGGTTAGTTCAGGTCATGGACGGTCGAAACACGGA 541
||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 481 TCATCTCCAAATTGGAGGAAGATTACGGTTAGTTCAGGTCATGGACGGTCGAAACACGGT 540
Query 542 GCTTGGCGGGTTTACGCTGCGTTAGACGTTGGTAGAGTTTTACCTGGTGGATCTTTTGTT 601
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 541 GCTTGGCGTGTTTACGCTGCGTTGGATGTTGGTAGAGTTTTACCTGGTGGATCTTTTGTT 600
Query 602 AGAGATATGGAGACAACGTTTGAAGTTGTATCTGTAAACAGTGTGAAAAACGAATCTTGT 661
|||||||||||||| ||||| ||||||||||| |||||| ||||| ||| ||||||||||
Sbjct 601 AGAGATATGGAGACGACGTTCGAAGTTGTATCGGTAAACGGTGTGGAAACCGAATCTTGT 660
Query 662 GAACTGGAAGATGTGAATCATGTGATTGTTGCTGAGGGGGAG-AGGGAATTGAGTTGTGG 720
||| ||||| |||||| | ||| | |||| ||||| || | | |||||||||||||
Sbjct 661 GAAGTGGAAAATGTGA-T--TGT--T-GTTGA--AGGGG-AGCAAG-AATTGAGTTGTGG 710
Query 721 TGGAGATGATGATGATGTTGTTGTTGTGGTTAGGGCGTTTCCGCGAAGTGGGAGGACGCA 780
||||||||||| | |||||| | || | |||||||||||||||||||||||||||||
Sbjct 711 TGGAGATGATG-T--TGTTGT-G--GT--T-AGGGCGTTTCCGCGAAGTGGGAGGACGCA 761
Query 781 TCAGATTAGGTTACATTGTCAGTATCTTGGGATTCCTATTAGAGGAGATGTTAAGTATCA 840
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 762 TCAGATTAGGTTACATTGTCAGTATCTTGGGATTTCGATTAGAGGAGATGTTAAGTATCA 821
Query 841 TGGAGTGTATGAGTGGA-ATGGAAGAACATTTGAGGGGCATGAGCTTCACGCTGAGTGTT 899
|||| |||||||||||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 822 TGGAATGTATGAGTGGAGA-GGAAGAACATTTGAGGGGCATGAGCTTCATGCTGAGTGTT 880
Query 900 TATCGTTAGATCATCCGGTTACGGGTGATTCTATTGTTATTCGAGCTCCTCTTCCGTATT 959
| ||||| |||||||||||||||| |||| ||||||||||||||||||||||||||| |
Sbjct 881 TGTCGTTGGATCATCCGGTTACGGATGATCCTATTGTTATTCGAGCTCCTCTTCCGTGCT 940
Query 960 GGGC-AGCCGGAGATTGAAAAT-GTAACGGTTAAGGGATAGAGT-TGAATGGTTAGTGTG 1016
|||| | || ||||| |||| | ||||||||| | || ||| | | ||||| ||||||
Sbjct 941 GGGCCA-CCAGAGAT-GAAAGTTGTAACGGTTGATGGTTAGT-TATCAATGGATAGTGTT 997
Query 1017 AAGATTTTGACCTTTGTTTAACAAT-TTGTTTTCCAGAATCTCATTTCTTCAGTGTCAAA 1075
||||| ||||| || ||| | | || |||| | ||| ||||||||||| |||||||
Sbjct 998 AAGATCTTGACATTGGTTGATTTGTGTTTTTTTTAAAAAT-TCATTTCTTCAATGTCAAA 1056
Query 1076 GATGGAAGATT 1086
|||||||||||
Sbjct 1057 GATGGAAGATT 1067
Score = 76.8 bits (41), Expect = 4e-13
Identities = 49/53 (92%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 1130 AACATTGGCAAGAAGGAAGTACATTGAATACAATCCTCTGTTTGCTTTTGTTT 1182
|||||| | |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1068 AACATTAGAAAGAAGGAAGTACATTGAATACAATCCTATGTTTCCTTTTGTTT 1120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52031274670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5