BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56350.1
Length=1673
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474798 jgi|Araly1|474798|fgenesh2_kg.1__4752__AT1G56350.1 1914 0.0
> Ahg474798 jgi|Araly1|474798|fgenesh2_kg.1__4752__AT1G56350.1
Length=1557
Score = 1914 bits (1036), Expect = 0.0
Identities = 1238/1337 (93%), Gaps = 8/1337 (1%)
Strand=Plus/Plus
Query 268 ATTCTGGGAGTAGTTTCGCTTCCA-GTACTCGATCATTGAGCTCAGAAGCTGTAGCTGTG 326
|||||||||||||||||| ||||| | ||||||||||||| |||||||||||||||||||
Sbjct 225 ATTCTGGGAGTAGTTTCGTTTCCACG-ACTCGATCATTGAACTCAGAAGCTGTAGCTGTG 283
Query 327 GCAGCGACTTGTGATGGACTTACTGTGGAACGAATTATAGCTAATCAGTGGCCGATTTTA 386
|| ||||||||||| |||||||| || |||||||| ||||||||||| ||||||||||||
Sbjct 284 GCTGCGACTTGTGACGGACTTACAGTAGAACGAATCATAGCTAATCAATGGCCGATTTTA 343
Query 387 GATGAGAATGAAGGTGATTGGAAGAGTCACGCTGCAGCAATTGCACAGTCTATTCAAGTC 446
|||||||||||| |||||||||| |||||||||||||||||| |||| || |||||||||
Sbjct 344 GATGAGAATGAAAGTGATTGGAAAAGTCACGCTGCAGCAATTTCACAATCGATTCAAGTC 403
Query 447 ATCAAGAGACGATTACAGTGGAAGAAACTCTTGGTGAGGCTGAAAGTTTTATCTGCAGAG 506
||||||||||||||||||||||||||||| ||||||||| | ||||| |||||| |||||
Sbjct 404 ATCAAGAGACGATTACAGTGGAAGAAACTTTTGGTGAGGTTAAAAGTGTTATCTACAGAG 463
Query 507 TTGAACAAGTCTGATCTT-TGGGATGATCCAACTCATGCTGGTAAGATAAGCCGGGAGCA 565
|||| ||| ||||| || ||| ||||||| | |||||||||||||||||||||||| ||
Sbjct 464 CTGAATAAGCCTGAT-TTATGGAATGATCCGATTCATGCTGGTAAGATAAGCCGGGAACA 522
Query 566 CGGCTCGCTTACGGGAAAAATGAAAGGAGTTATGACATTTGAGAGAGAGCTTCTTGAACA 625
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 TGGTTCGCTTACGGGGAAAATGAAAGGAGTTATGACATTTGAGAGAGAGCTTCTTGAACA 582
Query 626 CATTGACATGTTGAAACTCGCTAAAGAGGAGAACGATTCAGAGTTAGAATCGGAAACTTT 685
||||| ||||||||||| ||||||||||||| ||| ||||||||||||||||||| ||
Sbjct 583 TATTGATATGTTGAAACTTACTAAAGAGGAGAATGATACAGAGTTAGAATCGGAAACATT 642
Query 686 AAAGGCATTGATAGATATGAGAAGGGTGTCAAAAGAGAAAGAACTCGAGGCTTTATTATC 745
||||||||||| |||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 643 GAAGGCATTGATGGATATGAGGAGAGTTTCAAAAGAGAAAGAACTCGAGGCTTTATTATC 702
Query 746 TGCGGATAATGATCCTTGTTCTTGTTATATCGAGGTTCAAGCTGGAGCTGGAGGAACAGA 805
|||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 703 TGCGGAGAATGATCCGTGTTCCTGTTATATTGAGGTTCAAGCTGGAGCTGGAGGAACAGA 762
Query 806 GAGCAATGATTGGGCAGCTATGGTAATGGAAATGTACAAAACATGGGCTCAACGACGCAA 865
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 763 GAGCAATGATTGGGCATCTATGGTAATGGAAATGTATAAAACATGGGCTCAACGACGTAA 822
Query 866 ATTTTCAGTCACTGTGGTTGATGAAGCTCCTGGGGAGATAGCAGGAATCAAGCGTGCTAC 925
||||||||||||||| ||||||||||| ||||||| ||||| |||||||||||||| ||
Sbjct 823 ATTTTCAGTCACTGTCGTTGATGAAGCGGCTGGGGAAATAGCGGGAATCAAGCGTGCAAC 882
Query 926 AATCAAAGTGAACGGTGAATACGCATACGGATACGCCAAAGCAGAAGTTGGAGTACATAG 985
|||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||
Sbjct 883 AATCAAAGTGAACGGTGAATACTCATATGGATACGCCAAAGCAGAAGTTGGAGTTCATAG 942
Query 986 GCTGGTGCGTATATCCCCGTTTGACAGTGGAAAACGGAGACACACTTCGTTTGCGGCAGT 1045
||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||
Sbjct 943 GCTGGTGCGTATATCCCCGTTTGACAGTGGAAAACGGAGGCACACTTCCTTTGCAGCGGT 1002
Query 1046 TGCGGTGATTCCAATTCTAGGTGATGGGTCCACCCGTGTGGAGATCAATGACTCCGATCT 1105
||||||||||||||||||||||||||| || ||||| || ||||||||||||| |||||
Sbjct 1003 TGCGGTGATTCCAATTCTAGGTGATGGTTCAACCCGAGTACAGATCAATGACTCGGATCT 1062
Query 1106 CCGGATTGAGCGGTTCCGTTCTGGAGGAGCCGGTGGGCAGCACGCTAACACGACAGACAG 1165
|||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1063 CCGGATCGAGCGGTTCCGTTCTGGAGGAGCCGGTGGACAGCATGCTAACACGACAGACAG 1122
Query 1166 TGCTGTTAGAATCGTTCACATACCAACTGGCATAACAGCAACTTGTCAGAATGAAAGGTC 1225
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 TGCTGTGAGAATCATTCACATACCAACTGGCATAACAGCAACTTGTCAGAATGAAAGGTC 1182
Query 1226 ACAACATAGT-AACAAGGCTTCAGCAATGGCAGTACTACAATCACGGTTAGACCAACTGG 1284
||||||| | |||||||||||||||||||| |||||||||||||| ||||||||| |||
Sbjct 1183 GCAACATA-TGAACAAGGCTTCAGCAATGGCGGTACTACAATCACGTTTAGACCAATTGG 1241
Query 1285 AAATGGCTCGTCAGACAGCAATGAACGCTCAACATACACAATCACTAACAGAGATCAGCT 1344
||||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||
Sbjct 1242 AAATGGCTCGTCAGACAGCAATGAATGCTCAACATACGCAATCACTAACCGAAATCAGCT 1301
Query 1345 GGGGAAACCAGATACGAACTTATGTTCTCCATCCATACAGAATGGTGAAGGATCTGCGAA 1404
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1302 GGGGAAACCAGATACGAACTTACGTTCTCCATCCATACAGAATGGTGAAGGATCTGCGAA 1361
Query 1405 CCAACTACGAGGTCTCTGATCCTGACTCGGTTCTTGAAGGAGACTTAGATGGTTTCATCT 1464
| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1362 CAAACTACGAAGTCTCTGATCCCGACTCGGTTCTTGAAGGAGACTTAGATGGTTTCATCT 1421
Query 1465 TGAGCTTCTTATCTTCTTCTTTAGACAAAGATGATCCTGAACATTAGTTTATAGATGTTG 1524
||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||
Sbjct 1422 TGAGCTTCTTATCTTCTTCTTTAGACAGAGATGATCCAGAACATTAGTTTAGAGATGTTG 1481
Query 1525 ACATGATTGTCTCAAGAGAGTTCTACTTATGTTTACTTGAAACGTCTTTTTATT-ACTAA 1583
||||||||||||||| |||||| | |||||||| |||||||||||||||||||| ||| |
Sbjct 1482 ACATGATTGTCTCAAAAGAGTTATTCTTATGTT-ACTTGAAACGTCTTTTTATTTACTTA 1540
Query 1584 ACTCCGAAAGGACTTAg 1600
|||||||||||| ||||
Sbjct 1541 ACTCCGAAAGGATTTAG 1557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62734633515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5