BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56360.1
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474799 jgi|Araly1|474799|fgenesh2_kg.1__4753__AT1G56360.1 2102 0.0
Ahg328130 jgi|Araly1|328130|fgenesh1_pm.C_scaffold_7000357 1428 0.0
> Ahg474799 jgi|Araly1|474799|fgenesh2_kg.1__4753__AT1G56360.1
Length=1401
Score = 2102 bits (1138), Expect = 0.0
Identities = 1312/1398 (94%), Gaps = 4/1398 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAATCTGGTCATATTTGCCTTCTTGTTCTTAAGCATCACTACTGTAATCAATGGT 60
||||||||||| || ||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGAAGAATCTTGTTATATTCGTCTTCTTGTTCTTAAGCATCACTACTGTGATCAATGGT 60
Query 61 GGAATAACAAGTAAATTTGTCCGCCAAGCTTTACCATCGATCGAAATGTCTCTCGACACT 120
|||||||||||| |||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 61 GGAATAACAAGTGAATTTGTCCGCCAAGCTTTACCATCGATTGAGATGTCTCTCGATACT 120
Query 121 TTCCCTTCTCCTGGTGGCTACAACACTCCTGAACAGGTTCATCTGACTCAAGGAGACCAT 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCCCTTCTCCTGATGGCTACAACACTCCTGAACAGGTTCATCTGACTCAAGGAGACCAT 180
Query 181 GATGGACGTGGCATGATTGTCTCGTGGGTCACACCGTTGAATCTCGCTGGTTCTAACGTT 240
||||| | |||||||||||| ||||||||||| ||||| || ||||||||||||||| ||
Sbjct 181 GATGGGCATGGCATGATTGTTTCGTGGGTCACGCCGTTAAACCTCGCTGGTTCTAACATT 240
Query 241 GTTACCTACTGGATCGCTACTAATGGTAGTGACGTAAAGCCAGCGAAAAAGAGAGCTCAT 300
||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 241 GTTACTTACTGGATCGCTACTAATGGTAGTGACATAAAGCCAGCAAAAAAGAGAGCTCAC 300
Query 301 GCCTCCACTAAATCTTACAGATTCTATGACTATAG-TTCAGGATTTCTCCATCACGCCAC 359
|| ||||| ||||| |||||||||||||||||| | ||| |||||||| |||||||||||
Sbjct 301 GCTTCCACGAAATCGTACAGATTCTATGACTAT-GCTTCTGGATTTCTGCATCACGCCAC 359
Query 360 AATTAAGGGACTCGAGTACGATACCAAGTACATCTATGAGGTTGGTACCGATAAATCCGT 419
||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 CATTAATGGACTCGAGTATGATACCAAATACATCTATGAGGTTGGTACCGATAAATCCGT 419
Query 420 TAGACAATTCTCCTTCACTACTCCTCCAAAGATCGGACCCGATGTTCCATACACATTCGG 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 TAGACAATTCTCCTTCACTACTCCTCCAAAGATCGGACCCGATGTTCCATACACGTTCGG 479
Query 480 CATCATTGGTGATCTTGGACAGACTTATGCTTCTAATGAGACATTGTATCATTACATGTC 539
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 480 CATCATTGGTGATCTTGGACAAACTTATGCTTCAAATGAGACATTGTATCATTACATGTC 539
Query 540 AAACCCTAAAGGCCAAGCTGTTCTCTTTGCTGGAGACTTGTCATATGCAGACGACCACCC 599
|| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 540 GAATCCTAAAGGCCAAGCTGTTCTATTTGCCGGAGACTTGTCATACGCAGACGACCACCC 599
Query 600 GAATCATGACCAGA-GAAAGTGGGATACTTGGGGAAGATTTATGGAGCCTTGTGCTGCTT 658
|||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 600 GAATCATGACCA-ACGAAAGTGGGATACTTGGGGAAGATTTATGGAGCCTTGCGCTGCTT 658
Query 659 ACCAGCCCTTCATCTTTGCTGCCGGGAATCATGAAATTGATTTTGTTCCAAACATTGGTG 718
||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||| ||||
Sbjct 659 ACCAGCCCTTCATCTTTGCTGCCGGAAATCATGAGATTGATTTCGTTCCTAACATAGGTG 718
Query 719 AGCCTCACGCATTCAAGCCCTACACTCACCGTTACCCTAACGCCTACAAAGCTTCACAAA 778
|||||||||| |||||||| ||||||||||||||||| || || |||||||||||||| |
Sbjct 719 AGCCTCACGCCTTCAAGCCATACACTCACCGTTACCCCAATGCTTACAAAGCTTCACAGA 778
Query 779 GCACTTCTCCTCTTTGGTACTCAGTGAGACGTGCTTCTGCTCACATCATCGTCCTCTCTT 838
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 779 GCACTTCTCCTCTTTGGTACTCAGTTAGACGTGCTTCTGCTCACATCATCGTCCTCTCTT 838
Query 839 CTTACTCGGCCTACGGAAAATACACGCCTCAATACATTTGGCTTGAGCAAGAGCTAAAGA 898
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 839 CTTACTCGGCCTATGGAAAATACACGCCTCAATACATTTGGCTTGAGCAAGAGCTGAAGA 898
Query 899 ATGTGAACAGAGAAGAGACTCCATGGTTGATTGTCATTGTTCACTCTCCGTGGTACAACA 958
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 899 ATGTGAACAGAGAAGAGACTCCATGGTTGATTGTCATGGTTCACTCTCCGTGGTACAACA 958
Query 959 GTAATAACTATCATTACATGGAAGGTGAGAGCATGAGAGTTATGTTTGAGTCGTGGCTCG 1018
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 959 GTAATAACTACCATTACATGGAAGGTGAGAGCATGAGACTTATGTTTGAGTCGTGGCTCG 1018
Query 1019 TTAACAGCAAGGTTGATTTGGTTTTGTCTGGTCATGTCCATGCCTATGAGAGATCTGAAC 1078
|||| |||||||| |||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 1019 TTAATAGCAAGGTCGATTTGGTTTTGTCGGGTCATGTTCATGCCTATGAGAGATCCGAAC 1078
Query 1079 GTATCTCCAATATTAAGTACAACATCACCAATGGCTTGAGCTCTCCTGTGAAAGATCCTA 1138
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1079 GTATCTCTAATATTAAGTACAACATCACCAATGGGTTGAGCTCTCCTGTGAAAGATCTTT 1138
Query 1139 ATGCTCCTATTTACATTACTATCGGAGATGGAGGAAACATTGAAGGAATTGCAAACAGTT 1198
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1139 CTGCTCCTATTTACATCACTATCGGAGATGGAGGAAACATTGAAGGAATTGCAAATAGTT 1198
Query 1199 TCGTGGATCCACAACCGAGTTACTCAGCATATAGAGAGGCGAGTTTTGGCCATGCGGTTT 1258
||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 1199 TCGTGGATCCACAACCGAGTTACTCGGCATATAGAGAGGCGAGTTTTGGTCACGCGGTTT 1258
Query 1259 TAGAGATTATGAATAGGACTCACGCGCAGTACACATGGCATAGGAACCAAGACAACGAGC 1318
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TAGAGATTAAGAACAGGACTCACGCGCAGTACACATGGCATAGGAACCAAGACAACGAGC 1318
Query 1319 CTGTCGCCGCTGACTCTATTATGTTGCATAACAGACACTTCTTTCCGGTGGAGGAAATAG 1378
|| | || || || ||| ||||||||| ||||||||| |||||||||| |||||||||||
Sbjct 1319 CTATTGCTGCCGATTCTGTTATGTTGCTTAACAGACATTTCTTTCCGGGGGAGGAAATAG 1378
Query 1379 TTTCCAGCAACATTAGGG 1396
||||||||||||||||||
Sbjct 1379 TTTCCAGCAACATTAGGG 1396
> Ahg328130 jgi|Araly1|328130|fgenesh1_pm.C_scaffold_7000357
Length=1401
Score = 1428 bits (773), Expect = 0.0
Identities = 1191/1392 (86%), Gaps = 31/1392 (2%)
Strand=Plus/Plus
Query 25 TTCTTGT-TCT-TAAGCATCACTACTGTAATCAATGGTGGAATAACAAGTAAATTTGTCC 82
||||||| | | ||||||| || ||||| ||||||||||||| |||||| |||||| |||
Sbjct 26 TTCTTGTGTTTCTAAGCATTACCACTGTGATCAATGGTGGAACAACAAGCAAATTTTTCC 85
Query 83 GCCAAGCTTTACCATCGATCGAAATGTCTCTCGACACTTTCCCTTCTCCTGG-TGGCT-A 140
| ||||| |||||| | ||| ||| ||||| | ||||| || ||||| || ||| | |
Sbjct 86 GAAAAGCTCAACCATCAACCGAGATGCCTCTCAAAACTTTTCCATCTCC-GGCTGG-TCA 143
Query 141 CAACACTCCTGAACAGGTTCATCTGACT-CAAGGAGACCATGATGGACGTGGCATGATTG 199
|| ||||||||||||||||| | | | |||||||| | ||||||||||||||||
Sbjct 144 TAATGCTCCTGAACAGGTTCATATCA-TCCAAGGAGATTACAATGGACGTGGCATGATCA 202
Query 200 TCTCGTGGGTCACACCGTTGAATCTCGCTGGTTCTAACGTTGTTACCTACTGGATCGCTA 259
|||||||||| |||||||| || || |||||||||||||||||||| ||||||| ||
Sbjct 203 TCTCGTGGGTGACACCGTTAAACCTAGCTGGTTCTAACGTTGTTACTTACTGGAAGGCGG 262
Query 260 CTAATGGTAGTGACGTAAAGCCAGCG-AAA-AAGAGAGCTCATGCCTCCAC-TAAATCTT 316
|| || | || || ||| | | | ||| |||||||||||||||||||| | ||||
Sbjct 263 TTAGCGG-A--GATGTGAAGTC-G-GAAAAGAAGAGAGCTCATGCCTCCACGT-CGTCTT 316
Query 317 ACAGATTCTATGACTATAGTTCAGGATTTCTCCATCACGCCACAATTAAGGGACTCGAGT 376
|| |||| |||||||||| ||| || ||||| ||||| ||||| ||||| |||||| |||
Sbjct 317 ACCGATTTTATGACTATACTTCTGGTTTTCTTCATCATGCCACCATTAAAGGACTCAAGT 376
Query 377 ACGATACCAAGTACATCTATGAGGTTGGTACCGATAAATCCGTTAGACAATTCTCCTTCA 436
|||||||||||||||||||||||||||| || ||| |||||||||| ||||| || ||||
Sbjct 377 ACGATACCAAGTACATCTATGAGGTTGGAACAGATGAATCCGTTAGGCAATTTTCTTTCA 436
Query 437 CTACTCCTCCAAAGATCGGACCCGATGTTCCATACACATTCGGCATCATTGGTGATCTTG 496
|||| ||||||||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 437 CTACACCTCCAAAGGTTGGACCTGATGTTCCATACACATTCGGCATCATTGGTGATCTTG 496
Query 497 GACAGACTTATGCTTCTAATGAGACATTGTATCATTACATGTCAAACCCTAAAGGCCAAG 556
|||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 497 GACAAACTTATGCTTCTAACGAGACATTATATCATTACATGTCAAACCCTAAAGGCCAAG 556
Query 557 CTGTTCTCTTTGCTGGAGACTTGTCATATGCAGACGACCACCCGAATCATGACCAGAGAA 616
|||||||||| |||||||||| || || ||||| || || || || ||||| || || |
Sbjct 557 CTGTTCTCTTCCCTGGAGACTTATCTTACGCAGATGATCATCCAAACCATGATCAAAGGA 616
Query 617 AGTGGGATACTTGGGGAAGATTTATGGAGCCTTGTGCTGCTTACCAGCCCTTCATCTTTG 676
|||||||| ||||||||||||| |||||||||||||||||||||| |||||||||| ||
Sbjct 617 AGTGGGATTCTTGGGGAAGATTCGTGGAGCCTTGTGCTGCTTACCAACCCTTCATCTATG 676
Query 677 CTGCCGGGAATCATGAAATTGATTTTGTTCCAAACATTGGTGAGCCTCACGCATTCAAGC 736
||||||| ||||| |||||||||||||| |||||||| || |||||||| || |||||||
Sbjct 677 CTGCCGGAAATCACGAAATTGATTTTGTCCCAAACATAGGGGAGCCTCATGCCTTCAAGC 736
Query 737 CCTACACTCACCGTTACCCTAACGCCTACAAAGCTTCACAA-AGCACTTCTCCTCTTTGG 795
|||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||
Sbjct 737 CCTACACTCACCGTTACCATAACGCCTACAAAGCTTCG-AAGAGCACTTCTCCTCTTTGG 795
Query 796 TACTC-AGTGAGACGTGCTTCTGCTCACATCATCGTCCTCTCTTCTTACTCGGCCTACGG 854
||||| | | |||||||| ||||||||||||||||||||||| ||||| || || |||||
Sbjct 796 TACTCTATT-AGACGTGCATCTGCTCACATCATCGTCCTCTCCTCTTATTCTGCTTACGG 854
Query 855 AAAATACACGCCTCAATACATTTGGCTTGAGCAAGAGCTAAAGAATGTGAACAGAGAAGA 914
||||||||| |||||||| | ||||| || |||||| | ||||| ||||||||||||||
Sbjct 855 AAAATACACACCTCAATATGTGTGGCTCGACCAAGAGTTGAAGAAGGTGAACAGAGAAGA 914
Query 915 GACTCCATGG-TTGATTGTCATTGTTCACTCTCCGTGGTACAACAGTAATAACTATCATT 973
|||||||||| || |||||||| |||||||| ||||||||||| ||||||||||| ||||
Sbjct 915 GACTCCATGGCTT-ATTGTCATGGTTCACTCGCCGTGGTACAATAGTAATAACTACCATT 973
Query 974 ACATGGAAGGTGAGAGCATGAGAGTTATGTTTGAGTCGTGGCTCGTTAACAGCAAGGTTG 1033
|||||||||||||||||||||||| |||||||| || ||| ||||||||||||| || |
Sbjct 974 ACATGGAAGGTGAGAGCATGAGAGCAATGTTTGAATCATGGTTCGTTAACAGCAAAGTCG 1033
Query 1034 ATTTGGTTTTGTCTGGTCATGTCCATGCCTATGAGAGATCTGAACGTATCTCCAATATTA 1093
||||||| ||||||||||| |||||| ||||||||||||| |||||| ||||||||||||
Sbjct 1034 ATTTGGTATTGTCTGGTCACGTCCATTCCTATGAGAGATCCGAACGTGTCTCCAATATTA 1093
Query 1094 AGTACAACATCACCAATGGCTTGAGCTCTCCTGTGAAAGATCCTA-ATGCTCCTATTTAC 1152
| || || |||||||||||||||||||||||||||||||||||| | || || ||||||
Sbjct 1094 AATATAATATCACCAATGGCTTGAGCTCTCCTGTGAAAGATCCTTCA-GCCCCGATTTAC 1152
Query 1153 ATTACTATCGGAGATGGAGGAAACATTGAAGGAATTGCAAACAGTTT--CGTGGATCCAC 1210
|| |||||||||||||||||||||||||||||||| ||||| ||||| | || |||| |
Sbjct 1153 ATCACTATCGGAGATGGAGGAAACATTGAAGGAATCGCAAATAGTTTTAC-TG-ATCCTC 1210
Query 1211 AACCGAGTTACTCAGCATATAGAGAGGCGAGTTTTGGCCATGCGGTTTTAG-AGATTATG 1269
||||||| || || || |||||||| || |||||||| ||||| ||||| | ||||| |
Sbjct 1211 AACCGAGCTATTCGGCGTATAGAGAAGCTAGTTTTGGTCATGCAGTTTT-GCAGATTTTC 1269
Query 1270 AATAGGACTCACGCGCAGTACACATGGCATAGGAACCAAGACAACGAGCCTGTCGCCGCT 1329
|||| ||||||||| ||||||||||| |||||||||||||| || ||| | || |||
Sbjct 1270 AATAAAACTCACGCGTTCTACACATGGCACAGGAACCAAGACAATGAACCTATTGCAGCT 1329
Query 1330 GACTCTATTATGTTGCATAACAGACACTTCTTTCCGGTGGAGGAAATAGTTTCCAGCAAC 1389
|| || ||||||||||| |||||| | |||||||| || |||||| |||| || |||||
Sbjct 1330 GATTCAATTATGTTGCACAACAGATATTTCTTTCCAGTAGAGGAATTAGTATCTGGCAAC 1389
Query 1390 ATTAGGGCCTAA 1401
||||||||||||
Sbjct 1390 ATTAGGGCCTAA 1401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52374086875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5