BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G56400.1
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337821 jgi|Araly1|337821|fgenesh1_pg.C_scaffold_1004386 2045 0.0
Ahg950132 jgi|Araly1|950132|scaffold_802019.1 1343 0.0
> Ahg337821 jgi|Araly1|337821|fgenesh1_pg.C_scaffold_1004386
Length=1440
Score = 2045 bits (1107), Expect = 0.0
Identities = 1337/1448 (92%), Gaps = 16/1448 (1%)
Strand=Plus/Plus
Query 1 ATGACTTTC-AAGAGAATAGCTTCAAGTATCCAACAAGACAGATTATCCAATCTACCAGA 59
||||| ||| ||||||||||||||||||||||||| |||| | |||||||||||||| ||
Sbjct 1 ATGAC-TTCTAAGAGAATAGCTTCAAGTATCCAACTAGACGGCTTATCCAATCTACCGGA 59
Query 60 TGTGCTTCTGATTATGATAATCTCTTGCTTGTCGTTTAAGGAATGTATAAGGACCAGTGT 119
|||| ||||||||| ||| || |||| ||||||||||||||||||| |||||||||||||
Sbjct 60 TGTGATTCTGATTACGATCATTTCTTACTTGTCGTTTAAGGAATGTTTAAGGACCAGTGT 119
Query 120 ACTCGCTAAGAGGTGGAGGTATCTATGTCGGGAAACAAGAAACATTTCTTTTAAGGAAAC 179
|||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||| |
Sbjct 120 ACTCGCTAAGAGGTGGAGGTATCTCTGTCGGGAGACAAGAAACATTGCTTTTAAGGAATC 179
Query 180 CGAGTACGTGGACCACTTTGTCTCCGACAAAAGATCCAAAAGGGTTTCGTTTGCTGC-TT 238
||||| |||||||||| |||||||||||||| |||||||||| ||||||||| | | |
Sbjct 180 AGAGTATGTGGACCACTCTGTCTCCGACAAAATATCCAAAAGGATTTCGTTTG-TTCACT 238
Query 239 ATATGTGTCAATGGGTCTCTAGATATCACGGTCGTTACATTGAAACCCTCGAGATTTATT 298
||||| |||||||| ||||||||||||| ||||||||||| ||||||||||||||| |||
Sbjct 239 ATATGCGTCAATGGATCTCTAGATATCATGGTCGTTACATCGAAACCCTCGAGATTAATT 298
Query 299 TCTCCATTCCATCGGATTTTCTGGCAGCGGTCGAGTCACTGATCGAATTCGCGGTCTCAA 358
|||||||||| |||| |||| | || | | || |||| |||||||||||||| |||||||
Sbjct 299 TCTCCATTCCTTCGGGTTTTGTTGCGGAGATCCAGTCCCTGATCGAATTCGCAGTCTCAA 358
Query 359 GACAAGTCAAGAACCTAGTTCTTGATTTCTCGGACCCTTCTTGGATAAGCACTAGCTGTG 418
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 359 GACAAGTCAAGAACCTAGTTCTTGATTTCAAAGACCCTTCTTGGATAAGCACTAGCTGGG 418
Query 419 CGTCGAGGTATGACTATGTTTG-TGTGCAATTGCCTGTATGCGTTTATAGTCTAACAACC 477
|||||||||||||| ||| ||| |||||||||||| ||||||||||| ||||||||||||
Sbjct 419 CGTCGAGGTATGACCATG-TTGTTGTGCAATTGCCCGTATGCGTTTACAGTCTAACAACC 477
Query 478 CTTGAATCACTGAAGATTTACTCGTGCGGGTTTGACCCCTCGAAATTCTCAAACTCGAGA 537
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 478 CTTGAATCACTGAAGATTTACTCGTGCGGGTTTGACCCCTCTAAATTCTCAAACTCGAGA 537
Query 538 TTGCCTAGAAAGCTCTCTATTGGTTGGATCAAACTCACAGACGTTGAGTCTTTGTTATTA 597
|||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||| |
Sbjct 538 TTGCCTAGAAAGCTCTCTATTGGTTGGATCAAACTCCCAGAGGTTGATTCTTTGTTATCA 597
Query 598 AACTCTCCAACACTCAAGAGTCTAAGTATTAATTACTGTTGGGGTATTGAAATCCGAAAC 657
|||||||| |||||||||||||||||| || ||||||| |||||| |||||||| ||||
Sbjct 598 AACTCTCCTACACTCAAGAGTCTAAGTCTTGATTACTGCTGGGGTGTTGAAATCAAAAAC 657
Query 658 ATAGCCGGAGATATGAAAGAATTTGTATTTGAGAGCTGCGACTTCTCCTCTTTCATGGTT 717
|||||||||||||||||||||||||||||||| || || ||||||||||||||||||| |
Sbjct 658 ATAGCCGGAGATATGAAAGAATTTGTATTTGACAGATGTGACTTCTCCTCTTTCATGGCT 717
Query 718 TGTTGCTTTGACCTCCCTAATGTAGAGATCTTTAAATACTCTGGCCAAATTCTGTCCTTT 777
|||| ||||||||||||||||||||| ||||| || ||||| ||||| ||||| ||||||
Sbjct 718 TGTTCCTTTGACCTCCCTAATGTAGAAATCTTCAAGTACTCAGGCCAGATTCTTTCCTTT 777
Query 778 GATGTCAAGAGAATGAATATGAGCATCAAAGACG-TTATCTTGGATTTCACGGCAGAGGG 836
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 778 GATGTCAAGAGAATGAATATGAGCATCAAAGACGTTTA-CTTGGATTTCACGGCAGAGGG 836
Query 837 CTTGTATGA-AGATCGGAATCAAAGAACCAAATTAGAAGGATCAGTTCTCTCTGCCTTCC 895
| |||||| | | ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 837 CGAGTATGACA-AACGGAATCAAAGAACCAAATTAGAAGGATCAGTTCTTTCTGCCTTCC 895
Query 896 TTAACAATCTTAGAGGTGCGAGGACCTTAAGTGTCTGCCCTTATCTCCTTCAGACTATCC 955
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TTAACAATCTTCGAGGTGCGAGGACCTTAAGTGTCTGCCCTTATCTCCTTCAGACTATCC 955
Query 956 AAGAATGTGAAGATCC-ATTCGATTTGCTTCGTCCGATGGAAACACAACACTTGGTGCTG 1014
|||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 956 AAGAATGTGAAGATCCGCTT-GATTTGCTTCGTCCGATGGAAACGCAACACTTGGTGCTG 1014
Query 1015 AGAACGAGGTTGCATGTCATGGAATTTAAGGGAATTAAGCTCCTCCTCGATAATTGCCCT 1074
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1015 AGAACGAGGTTGCATGTCACAGAATTTAAGGGAATTAGGCTCCTCCTCGATAATTGCCCT 1074
Query 1075 AACCTAGAAACGTTAACTTTCGATATCTTCAGTCGAAGTC-TTTTCTCGTACAATAAGTC 1133
||||| |||| ||||||||||||||| |||| |||||| | |||||||||||||||||||
Sbjct 1075 AACCTGGAAATGTTAACTTTCGATATTTTCAATCGAAG-CATTTTCTCGTACAATAAGTC 1133
Query 1134 ATATTATGGCGTCGGTCCACGATCATATTGGaaaaaaaaCCTTACTTATAAGTCTCTTCC 1193
||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 1134 ATATTATGGCGTCGGTCCACGGTCATATTGGAAAAAGAACCTTACCTATAAGTCTCTTCC 1193
Query 1194 TAAGACACTTAAGGTCGTGGTCGTGAGGAACTTCAC-TGGTCGCTTTGGCGAGCTAAATG 1252
||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct 1194 TAAGACACTTAAGGTCGTGGTCGTGAGAAACTTC-CGTGGTCGCTTTGGCGAGCTAAATG 1252
Query 1253 TTTTGAAGTTTTTGATTCAGTCGGGACGTGGGCGTTGGCCTGGACGGGAGCATGGGCCTA 1312
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1253 TTTTGAAGTTTTTGATTCAGTCGGGACGTGGGCGTTGGCCTGGACGCGAGCATGGGCCTA 1312
Query 1313 TGCTGGAAAGAGTGGAGCTTTACATGGATAGTAGTATGGCAGAAAGTCAAAAAGAGTTGG 1372
|||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||
Sbjct 1313 TGCTGGAAAGAGTGGAGCTTTACATGCATAGTAGTATGGCGGAAAGTCAAAAGGAGTTGG 1372
Query 1373 CAGATGATGGAGCCATGATGTTACAGAGTATTTCAGGGGATGTACAGGTTCTTGTATATG 1432
|||||||||||||| ||||||||| |||||||||||| |||||||| || ||||| |||
Sbjct 1373 CAGATGATGGAGCCGCGATGTTACAAAGTATTTCAGGGCATGTACAGATTATTGTACATG 1432
Query 1433 ATCCTTGA 1440
||||||||
Sbjct 1433 ATCCTTGA 1440
> Ahg950132 jgi|Araly1|950132|scaffold_802019.1
Length=1477
Score = 1343 bits (727), Expect = 0.0
Identities = 1216/1448 (84%), Gaps = 49/1448 (3%)
Strand=Plus/Plus
Query 1 ATGACTTTC-AAGAGAATAGCTTCAAGTATCCAA-CAAGACAGATTATCCAATCTACCAG 58
||||| ||| |||||||||| ||||||||||||| | |||||||||||| |||||||| |
Sbjct 24 ATGAC-TTCTAAGAGAATAGTTTCAAGTATCCAATC-AGACAGATTATCGAATCTACCCG 81
Query 59 ATGTGCTTCTGATTATGATAATCTCTTGCTTGTCGTTTAAGGAATGTATAAGGACCAGTG 118
|| ||||||||||| || ||||||| |||||| || ||||||||| |||| |||||||
Sbjct 82 ATACACTTCTGATTATTATCATCTCTTCCTTGTCCTTCAAGGAATGTTTAAGTACCAGTG 141
Query 119 TACTCGCTAAGAGGTGGAGGTATCTATGTCGGGAAACAAGAAACATTTCTTTTAAGGAAA 178
||||| ||| ||||||||| || || ||||| || |||||||||||| | ||||| |||
Sbjct 142 TACTCTCTACGAGGTGGAGTTACCTCTGTCGAGAGACAAGAAACATTGCATTTAATGAAT 201
Query 179 CCGAGTACGTGGACCACTTTGTCTCCGACAAAAGATCCAAAAGGGTTTCGTTTGCT-GCT 237
||||||| || ||||||| ||| |||||||||| |||||||||| ||||||||| | ||
Sbjct 202 CCGAGTATGTCGACCACTCTGTATCCGACAAAAAATCCAAAAGGCTTTCGTTTGTTGGC- 260
Query 238 TATATGTGTCAATGGGTCTCTAGATATCACGGTCGTTACATTGAAACCCTCGAGATTTAT 297
|||||| |||||||| ||||||||||||| ||||||||||| |||| | ||||||||| |
Sbjct 261 TATATGAGTCAATGGATCTCTAGATATCATGGTCGTTACATCGAAAGCTTCGAGATTTGT 320
Query 298 TTCTCCATTCCA-TCGGATTTTCTGGCAGCGGTCGAGTCACTGATCGAATTCGCGGTCTC 356
|||||| ||||| | || ||| |||||| | ||||||| |||||||||| || || ||
Sbjct 321 TTCTCCCTTCCATTAGG-CTTTATGGCAGAGATCGAGTCTTTGATCGAATTTGCAGTGTC 379
Query 357 AAGACAAGTCAAGAACCTAGTTCTTGATTTCTCGGACCCTTCTTGGATAAGCACTAGCTG 416
|||||||||||||||||| ||| |||||||| ||||||||||||| || || |||| |
Sbjct 380 AAGACAAGTCAAGAACCTGGTTATTGATTTCAAAGACCCTTCTTGGACAATCAATAGCAG 439
Query 417 TGCGTCGAGGTATGACTATGTTTG-TGTGCAATTGCCTGTATGCGTTTATAGTCTAACAA 475
|||||| |||||| |||| ||| |||| ||||||| ||||||||||| ||||||||||
Sbjct 440 TGCGTCTTGGTATGCCTAT-CTTGCTGTGAAATTGCCCGTATGCGTTTACAGTCTAACAA 498
Query 476 CCCTTGAATCACTGAAGATTTACTCGTGCGGGTTTGACCCCTCGAAATTCTCAAACTCGA 535
|||| |||||||||||||||||| ||||||||||||| || ||||||||| ||||||||
Sbjct 499 CCCTCGAATCACTGAAGATTTACGCGTGCGGGTTTGATCCTTCGAAATTCACAAACTCGG 558
Query 536 GATTGCCTAGAAAGCTCTCTATTGGTTGGATCAAAC-TCACAGACGTTGAGTCTTTGTTA 594
|||||||||||||||||||||||||||||||| ||| ||||||| | ||||||||||||
Sbjct 559 GATTGCCTAGAAAGCTCTCTATTGGTTGGATC-AACTTCACAGAGGCCGAGTCTTTGTTA 617
Query 595 TTAAACTCTCCAACACTCAAGAGTCTAAGTATTAATTACTGTTGGGGTATTGAAATCCGA 654
| ||||||||| || ||||| |||||||||||| ||||||||||| || |||| ||| |
Sbjct 618 TCAAACTCTCCTACGCTCAAAAGTCTAAGTATTGATTACTGTTGGAGTGTTGATATCAAA 677
Query 655 AACATAGCCGGAGATATGAAAGAATTTGTATTTGAGAGCTGCGACTTC-TCCTCTTTCAT 713
|||||||||||||||||||||||| ||||||| || | || ||||||| ||| || |
Sbjct 678 AACATAGCCGGAGATATGAAAGAAGTTGTATTCGATAACTCCGACTTCTTCC-CTAAAAA 736
Query 714 GGTTTGTTGCTTTGACCTCCCTAATGTAGAGATCTTTAAATACTCTGGC-CAAATTCTGT 772
|| ||||| ||||||||| ||||||||||||||||| || ||||| ||| | | |||| |
Sbjct 737 GGCTTGTTCCTTTGACCTGCCTAATGTAGAGATCTTCAAGTACTCAGGCTC-AGTTCTCT 795
Query 773 CCTTTGATGTCAAGAGAATGAATATGAGCATCAAAGACGT-TATCTTGGATTTC-AC-G- 828
|||| ||||||||| ||||||||| || || ||||| || || |||||| ||| | |
Sbjct 796 CCTTCGATGTCAAGGGAATGAATAGGATAATAAAAGAAGTCTA-CTTGGACTTCTTCTGC 854
Query 829 GCAGAGGGCTTGTATGA-AGATCGGAATCAAAGAACCAAATTAGAAGGATCAGTTCTCTC 887
||||||||| || || | | | ||||| |||||| |||||||| ||| ||| ||| ||
Sbjct 855 GCAGAGGGCGAATACGATA-AACCGAATCGAAGAACAAAATTAGATGGAACAGATCTTTC 913
Query 888 TGCCTTCCTTAACAATCTTAGAGGTGCGAGGACCTTAAGTGTCTGCCCTTATCTCCTTCA 947
|| ||||||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 914 TGGCTTCCTTAACAGTTTTCGAGGTGCGAGGACCTTAAGTGTCTGCCCTTATCTCCTTCA 973
Query 948 GACTATCCAAGAATGTGAAGATCCATTCGA-TTTGCTTCGTCCGATGGAAACACAACACT 1006
| |||||||||||||||||||||| | | | ||| |||||||| ||||| ||| | || |
Sbjct 974 GTCTATCCAAGAATGTGAAGATCCGT-CAAGTTTACTTCGTCCTATGGATACAGAGCATT 1032
Query 1007 TGGTGCTGAGAACGAGGTTGCATGTCATGGAATTTAAGGGAATTAAGCTCCTCCTCGATA 1066
|||||||||||| |||| ||||||||||||| |||||||| ||||||||||| || ||||
Sbjct 1033 TGGTGCTGAGAATGAGGATGCATGTCATGGAGTTTAAGGGGATTAAGCTCCTTCTTGATA 1092
Query 1067 ATTGCCCTAACCTAGAAACGTTAACTTTCGATATCTTCAGTCGAAGTCTT-TTCTCGTAC 1125
||||||| ||||||||||| |||||||||||||| || ||||||| | |||||||||
Sbjct 1093 ATTGCCCGAACCTAGAAACACTAACTTTCGATATCATCCGTCGAAG-CAAGTTCTCGTAC 1151
Query 1126 AATAAGTCATATTATGGCGTCGGTCCACGATCATATTGGaaaaaaaaCCTTACTTATAAG 1185
| ||||||||||| |||| || ||||| | ||| |||| |||| | |||||| || |||
Sbjct 1152 ACTAAGTCATATTGTGGCATCTGTCCAAAAACATGTTGGCAAAATAGCCTTACCTACAAG 1211
Query 1186 TCTCTTCCTAAGACACTTAAGGTCGTGGTCGTGAGGAACT-TCACTGGTCGCTTTGGCGA 1244
|||||||||||||||||||| || || || || ||||| | | | ||||| |||| ||
Sbjct 1212 TCTCTTCCTAAGACACTTAAAGTGGTAGTGGTAAGGAATTAT-AGTGGTCACTTTAATGA 1270
Query 1245 GCTAAATGTTTTGAAGTTTTTGATTCAGTCGGGACGTGGGCGTTGGCCTGGACGGGAGCA 1304
||||||||| |||||||||||||||||||| ||||||||| | | | ||| |||
Sbjct 1271 GCTAAATGTATTGAAGTTTTTGATTCAGTCCAGACGTGGGCAT-G-C--GGATGGG---- 1322
Query 1305 TGGGCCTATGCTGGAAAGAGTGGAGCTTTACATGGATAGTAGTATGGCAG-AAAGTCAAA 1363
| | |||| ||||||||||||||||||||||| ||| |||||||| || |||||||||
Sbjct 1323 T---C-TATGTTGGAAAGAGTGGAGCTTTACATGCATAATAGTATGG-AGGAAAGTCAAA 1377
Query 1364 AAGA-GTTGGCAGATGATGGA-GCC-ATGATGTTACAGAGTATTTCAGGGGATGTACAGG 1420
|| ||||||| |||| ||| ||| | ||||||||||||||||||||||| ||||||||
Sbjct 1378 G-GATGTTGGCACATGA-GGAAGCCGA-GATGTTACAGAGTATTTCAGGGGCTGTACAGG 1434
Query 1421 TTCTTGTA 1428
||||||||
Sbjct 1435 TTCTTGTA 1442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53859606430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5