BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G56415.1

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg914930 jgi|Araly1|914930|Al_scaffold_0001_5184                    411    3e-114
  Ahg924323 jgi|Araly1|924323|scaffold_105604.1                        309    1e-83 


> Ahg914930 jgi|Araly1|914930|Al_scaffold_0001_5184
Length=285

 Score =  411 bits (222),  Expect = 3e-114
 Identities = 266/287 (93%), Gaps = 4/287 (1%)
 Strand=Plus/Plus

Query  67   ATGGTGAGTATCATGAAGATAATGATGATCATGGTTTTGTTAGTGGTTGGCGTCAGTGCA  126
            |||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||
Sbjct  1    ATGGTGAGTATCATGAAGATAACGATTATCATGGTTTTGTTAGTGGTTGGCGTGAGTGCA  60

Query  127  AAGACGGTGGAAGAATGTAAACGAACAACGTGCGCGACTAAATGTCGTGACAGCAAAAGT  186
            ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct  61   AAGACGGTGGAAGAATGTAAACGAACAACCTGCGCGACTAAATGTCATGACAGCAAAAGT  120

Query  187  TTTGCTTGTTCTGATTGTAT-CATTCATTGCGCTTTTCCTGGAAGTGAAAGCAAAATAAG  245
            |||||||||||||||||| | | ||||||||||||||||||||||||| |||||||||||
Sbjct  121  TTTGCTTGTTCTGATTGTCTTC-TTCATTGCGCTTTTCCTGGAAGTGAGAGCAAAATAAG  179

Query  246  TCAACCACGGGCTTTGTGTCTCAGGAATTGTGATGTCGGATGTCGCCCAAGCAAC-ACCT  304
            |||| |||||||||| ||||||||| ||||||||||||  ||||  ||||||||| || |
Sbjct  180  TCAAGCACGGGCTTTCTGTCTCAGGGATTGTGATGTCGCTTGTCAACCAAGCAACGAC-T  238

Query  305  GCTACCAACGTTGTATTAAACACTGTCCTCCTCAATCTTTGATTTGA  351
            |||||||||||||||||||||||||||||||  || |||||||||||
Sbjct  239  GCTACCAACGTTGTATTAAACACTGTCCTCCAAAACCTTTGATTTGA  285


> Ahg924323 jgi|Araly1|924323|scaffold_105604.1
Length=322

 Score =  309 bits (167),  Expect = 1e-83
 Identities = 240/274 (88%), Gaps = 9/274 (3%)
 Strand=Plus/Plus

Query  63   AAAAATGGTGAGTATCATGAAGATAATGATGATCATGGTTTTGTTAGTGGTTGGCGTCAG  122
            ||||||||||||||||||||||||||||||||| || | | |||||||| ||||||| ||
Sbjct  20   AAAAATGGTGAGTATCATGAAGATAATGATGATTATAGCTCTGTTAGTGATTGGCGTGAG  79

Query  123  TGCAAAGACGGTGGAAGAATGTAAACGAACAACGTGCGCGACTAAATGTCGTGACAGCAA  182
            ||||||||| |||||| ||||||||||||||||||| | ||||||||||| |||||||||
Sbjct  80   TGCAAAGACTGTGGAACAATGTAAACGAACAACGTGTGAGACTAAATGTCATGACAGCAA  139

Query  183  AAGTTTTGCTTGTTCTGATTGTATCATTC-ATTGCGCTTTTCCTGGAAGTGAAAGCAAAA  241
            |||||||| ||||||||||||| || ||| || ||||||||||||||||||| || ||||
Sbjct  140  AAGTTTTGGTTGTTCTGATTGTCTCCTTCGAT-GCGCTTTTCCTGGAAGTGACAGTAAAA  198

Query  242  TA-AGTCAACCACGGGCTTTGTGTCTCAGGAATTGTGATGTCGGATGTCGCCCAAGCAAC  300
            || | |||||   ||||||||||| ||| ||||||||||||||| ||| |||| ||| | 
Sbjct  199  TAGA-TCAAC---GGGCTTTGTGTATCAAGAATTGTGATGTCGGTTGTGGCCCGAGCCAG  254

Query  301  -ACCTGCTACCAACGTTGTATTAAACACTGTCCT  333
             || ||||||||||||||||||||||  ||||||
Sbjct  255  GAC-TGCTACCAACGTTGTATTAAACGTTGTCCT  287



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16864770338


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5